Wall clock time and date at job start Tue Mar 31 2020 14:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21250 * 119.99950 * 2 1 4 4 C 1.47192 * 119.99705 * 179.97438 * 2 1 3 5 5 C 1.39591 * 120.09608 * 359.46889 * 4 2 1 6 6 C 1.39328 * 119.66478 * 180.02562 * 5 4 2 7 7 C 1.47715 * 120.06385 * 179.97438 * 6 5 4 8 8 O 1.21580 * 119.99730 * 26.92169 * 7 6 5 9 9 N 1.34776 * 119.99494 * 206.92064 * 7 6 5 10 10 C 1.36931 * 119.99653 * 181.34160 * 9 7 6 11 11 H 1.08006 * 119.99701 * 228.00760 * 10 9 7 12 12 C 1.38972 * 120.00161 * 47.99987 * 10 9 7 13 13 N 1.31379 * 120.00259 * 15.72650 * 12 10 9 14 14 Si 1.86807 * 119.99903 * 195.72120 * 12 10 9 15 15 H 1.48499 * 109.46742 * 90.00723 * 14 12 10 16 16 H 1.48499 * 109.47081 * 210.00073 * 14 12 10 17 17 H 1.48493 * 109.47157 * 330.00291 * 14 12 10 18 18 C 1.39705 * 120.00377 * 1.33664 * 9 7 6 19 19 C 1.38982 * 120.07931 * 230.46270 * 18 9 7 20 20 C 1.38078 * 119.91871 * 179.74577 * 19 18 9 21 21 C 1.38307 * 120.08229 * 0.25524 * 20 19 18 22 22 C 1.38320 * 120.15972 * 359.97388 * 21 20 19 23 23 C 1.38079 * 120.07468 * 0.02594 * 22 21 20 24 24 C 1.39821 * 119.86761 * 0.25316 * 6 5 4 25 25 C 1.38077 * 120.18884 * 359.50633 * 24 6 5 26 26 C 1.38049 * 120.33581 * 0.47600 * 25 24 6 27 27 C 1.50699 * 119.93118 * 179.76123 * 26 25 24 28 28 H 1.08999 * 109.47475 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47476 * 300.00783 * 1 2 3 30 30 H 1.09007 * 109.47016 * 59.99999 * 1 2 3 31 31 H 1.07999 * 120.16862 * 0.04187 * 5 4 2 32 32 H 0.96992 * 120.00348 * 184.96767 * 13 12 10 33 33 H 1.07997 * 120.04218 * 0.02562 * 19 18 9 34 34 H 1.08000 * 119.95880 * 180.22687 * 20 19 18 35 35 H 1.07994 * 119.92479 * 180.02562 * 21 20 19 36 36 H 1.07995 * 119.95974 * 180.02562 * 22 21 20 37 37 H 1.07999 * 120.03742 * 180.02562 * 23 22 21 38 38 H 1.07992 * 119.90871 * 179.75073 * 24 6 5 39 39 H 1.08006 * 119.83275 * 180.23204 * 25 24 6 40 40 H 1.09004 * 109.47281 * 261.14641 * 27 26 25 41 41 H 1.09001 * 109.47322 * 21.15116 * 27 26 25 42 42 H 1.09004 * 109.47140 * 141.15165 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2429 -1.2748 0.0006 5 6 1.5469 -2.4848 0.0123 6 6 2.2526 -3.6861 0.0133 7 6 1.5251 -4.9716 0.0262 8 8 0.4048 -5.0408 -0.4412 9 7 2.1032 -6.0677 0.5562 10 6 1.4398 -7.2656 0.5434 11 1 1.3811 -7.8598 1.4434 12 6 0.8421 -7.7165 -0.6273 13 7 1.1616 -7.1725 -1.7797 14 14 -0.4155 -9.0963 -0.5625 15 1 -1.7729 -8.5207 -0.3851 16 1 -0.3676 -9.8696 -1.8293 17 1 -0.1059 -9.9951 0.5782 18 6 3.3793 -5.9819 1.1183 19 6 4.3673 -6.8849 0.7445 20 6 5.6289 -6.7938 1.2983 21 6 5.9084 -5.8086 2.2279 22 6 4.9262 -4.9110 2.6059 23 6 3.6624 -4.9962 2.0563 24 6 3.6507 -3.6725 0.0079 25 6 4.3332 -2.4723 -0.0087 26 6 3.6423 -1.2772 -0.0102 27 6 4.3965 0.0274 -0.0229 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.4670 -2.4897 0.0203 32 1 0.6932 -7.4363 -2.5871 33 1 4.1500 -7.6543 0.0184 34 1 6.3982 -7.4929 1.0056 35 1 6.8961 -5.7393 2.6592 36 1 5.1481 -4.1427 3.3317 37 1 2.8961 -4.2948 2.3515 38 1 4.1983 -4.6032 0.0127 39 1 5.4133 -2.4685 -0.0166 40 1 4.4489 0.4267 0.9900 41 1 5.4054 -0.1398 -0.4002 42 1 3.8807 0.7390 -0.6676 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193135542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:37 Heat of formation + Delta-G solvation = 10.319696 kcal Electronic energy + Delta-G solvation = -27427.705120 eV Core-core repulsion = 23724.941191 eV Total energy + Delta-G solvation = -3702.763929 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.56791 -39.56427 -37.82362 -37.31608 -34.45534 -32.85568 -32.22827 -31.57057 -30.29382 -29.22010 -28.70272 -27.24165 -25.06974 -23.47125 -22.50640 -21.80567 -21.36637 -20.27520 -19.29513 -17.49630 -17.22893 -15.78304 -15.63941 -15.48158 -15.28069 -15.16351 -15.00121 -14.33061 -14.19794 -14.01368 -13.68398 -13.63830 -13.35997 -13.05069 -12.79270 -12.72698 -12.49952 -12.20427 -12.06676 -11.85656 -11.76086 -11.46865 -11.24736 -11.06866 -11.00979 -10.93854 -10.83711 -10.52340 -10.36708 -9.36289 -9.15879 -8.90936 -8.65270 -8.49561 -8.42284 -8.09167 -7.10872 -6.37827 -4.20421 0.83890 1.41316 1.85832 1.97461 2.56069 3.20068 3.27035 3.28362 3.68960 4.06213 4.18432 4.28843 4.49708 4.59511 4.96278 5.02038 5.08732 5.11283 5.33109 5.40745 5.42900 5.44976 5.48580 5.54582 5.58573 5.68130 5.81007 5.85421 5.93294 5.97056 6.01856 6.14069 6.19304 6.26446 6.41090 6.53552 6.57321 6.72142 6.74342 6.94027 7.05061 7.09856 7.17163 7.37981 7.49658 7.63432 8.08045 8.70373 8.82073 9.28923 9.85647 10.68704 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.005311 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.872589 B = 5271.270695 C = 7126.194771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.401 3.599 3 O -0.467 6.467 4 C -0.196 4.196 5 C -0.026 4.026 6 C -0.130 4.130 7 C 0.531 3.469 8 O -0.512 6.512 9 N -0.400 5.400 10 C -0.349 4.349 11 H 0.087 0.913 12 C 0.074 3.926 13 N -0.831 5.831 14 Si 0.917 3.083 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.170 3.830 19 C -0.136 4.136 20 C -0.104 4.104 21 C -0.163 4.163 22 C -0.103 4.103 23 C -0.157 4.157 24 C -0.044 4.044 25 C -0.148 4.148 26 C -0.016 4.016 27 C -0.121 4.121 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.139 0.861 32 H 0.271 0.729 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.145 0.855 39 H 0.127 0.873 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.371 8.135 4.610 11.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.282 3.718 3 O -0.345 6.345 4 C -0.197 4.197 5 C -0.045 4.045 6 C -0.134 4.134 7 C 0.320 3.680 8 O -0.388 6.388 9 N -0.113 5.113 10 C -0.475 4.475 11 H 0.105 0.895 12 C -0.138 4.138 13 N -0.463 5.463 14 Si 0.743 3.257 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.075 3.925 19 C -0.157 4.157 20 C -0.123 4.123 21 C -0.182 4.182 22 C -0.122 4.122 23 C -0.178 4.178 24 C -0.062 4.062 25 C -0.166 4.166 26 C -0.017 4.017 27 C -0.177 4.177 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.157 0.843 32 H 0.081 0.919 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.162 0.838 39 H 0.144 0.856 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.986 8.571 4.084 11.224 hybrid contribution -0.591 -0.932 -0.111 1.109 sum 5.395 7.639 3.974 10.161 Atomic orbital electron populations 1.22269 0.94106 1.05300 1.04538 1.22399 0.91481 0.87542 0.70363 1.90442 1.71483 1.34675 1.37908 1.20131 0.93838 0.94416 1.11365 1.21515 1.00283 0.90011 0.92654 1.20364 0.93835 0.95007 1.04186 1.18049 0.85753 0.82132 0.82050 1.90616 1.18973 1.84119 1.45106 1.40933 1.10093 1.08301 1.52023 1.19127 1.35028 0.97112 0.96210 0.89510 1.25390 0.97066 0.97113 0.94228 1.69823 1.36483 1.41495 0.98512 0.86109 0.81504 0.80382 0.77683 1.19932 1.20949 1.19398 1.18350 0.86596 0.94354 0.93236 1.21209 0.91656 1.01600 1.01202 1.20956 0.96286 0.98096 0.96976 1.20871 0.98989 0.97470 1.00889 1.20776 0.92903 0.98889 0.99650 1.21151 0.97874 1.00838 0.97934 1.22315 0.93837 0.99331 0.90718 1.20921 0.99901 0.91343 1.04471 1.20250 0.92423 0.95801 0.93188 1.21095 0.98874 0.94495 1.03213 0.89408 0.88968 0.88932 0.84312 0.91881 0.85265 0.86693 0.87054 0.86825 0.86631 0.83803 0.85555 0.90954 0.92396 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.27 10.19 36.00 0.37 -1.90 16 2 C 0.40 5.69 7.20 -30.68 -0.22 5.47 16 3 O -0.47 -7.29 14.01 5.58 0.08 -7.21 16 4 C -0.20 -3.09 5.86 -105.12 -0.62 -3.71 16 5 C -0.03 -0.45 8.99 -38.67 -0.35 -0.80 16 6 C -0.13 -2.64 4.59 -105.03 -0.48 -3.12 16 7 C 0.53 13.10 6.57 -12.39 -0.08 13.02 16 8 O -0.51 -14.32 14.74 5.30 0.08 -14.24 16 9 N -0.40 -9.76 2.62 -60.01 -0.16 -9.92 16 10 C -0.35 -9.17 8.58 -15.00 -0.13 -9.30 16 11 H 0.09 2.23 7.88 -52.48 -0.41 1.82 16 12 C 0.07 1.97 4.48 -17.47 -0.08 1.89 16 13 N -0.83 -23.29 11.95 55.50 0.66 -22.63 16 14 Si 0.92 20.69 29.59 -169.99 -5.03 15.67 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 C 0.17 3.49 3.41 -83.72 -0.29 3.21 16 19 C -0.14 -2.60 8.94 -39.36 -0.35 -2.95 16 20 C -0.10 -1.60 10.04 -39.61 -0.40 -2.00 16 21 C -0.16 -2.29 10.04 -39.53 -0.40 -2.68 16 22 C -0.10 -1.53 9.94 -39.61 -0.39 -1.92 16 23 C -0.16 -2.78 6.03 -39.37 -0.24 -3.02 16 24 C -0.04 -0.79 6.48 -39.05 -0.25 -1.04 16 25 C -0.15 -2.27 9.63 -39.71 -0.38 -2.65 16 26 C -0.02 -0.24 5.93 -104.05 -0.62 -0.86 16 27 C -0.12 -1.56 8.72 36.01 0.31 -1.24 16 28 H 0.09 0.97 5.60 -51.93 -0.29 0.68 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.14 2.33 5.73 -52.49 -0.30 2.03 16 32 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.13 2.68 7.94 -52.49 -0.42 2.26 16 34 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 35 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.12 2.08 7.15 -52.49 -0.38 1.70 16 38 H 0.14 2.72 4.42 -52.49 -0.23 2.49 16 39 H 0.13 1.62 8.04 -52.48 -0.42 1.20 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.64 8.01 -51.93 -0.42 0.22 16 42 H 0.09 1.27 5.84 -51.93 -0.30 0.96 16 LS Contribution 347.36 15.07 5.23 5.23 Total: -1.00 -30.81 347.36 -8.56 -39.37 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -4.84 Total: 7.34 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -4.59 Total: -13.60 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.51 Total: -32.55 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: 0.16 Total: -21.46 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.81 -8.56 -39.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193135542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.689 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds