Wall clock time and date at job start Tue Mar 31 2020 14:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21250 * 119.99950 * 2 1 4 4 C 1.47192 * 119.99705 * 179.97438 * 2 1 3 5 5 C 1.39591 * 120.09608 * 359.46889 * 4 2 1 6 6 C 1.39328 * 119.66478 * 180.02562 * 5 4 2 7 7 C 1.47715 * 120.06385 * 179.97438 * 6 5 4 8 8 O 1.21580 * 119.99730 * 26.92169 * 7 6 5 9 9 N 1.34776 * 119.99494 * 206.92064 * 7 6 5 10 10 C 1.36931 * 119.99653 * 181.34160 * 9 7 6 11 11 H 1.08006 * 119.99701 * 228.00760 * 10 9 7 12 12 C 1.38972 * 120.00161 * 47.99987 * 10 9 7 13 13 N 1.31379 * 120.00259 * 15.72650 * 12 10 9 14 14 Si 1.86807 * 119.99903 * 195.72120 * 12 10 9 15 15 H 1.48499 * 109.46742 * 90.00723 * 14 12 10 16 16 H 1.48499 * 109.47081 * 210.00073 * 14 12 10 17 17 H 1.48493 * 109.47157 * 330.00291 * 14 12 10 18 18 C 1.39705 * 120.00377 * 1.33664 * 9 7 6 19 19 C 1.38982 * 120.07931 * 230.46270 * 18 9 7 20 20 C 1.38078 * 119.91871 * 179.74577 * 19 18 9 21 21 C 1.38307 * 120.08229 * 0.25524 * 20 19 18 22 22 C 1.38320 * 120.15972 * 359.97388 * 21 20 19 23 23 C 1.38079 * 120.07468 * 0.02594 * 22 21 20 24 24 C 1.39821 * 119.86761 * 0.25316 * 6 5 4 25 25 C 1.38077 * 120.18884 * 359.50633 * 24 6 5 26 26 C 1.38049 * 120.33581 * 0.47600 * 25 24 6 27 27 C 1.50699 * 119.93118 * 179.76123 * 26 25 24 28 28 H 1.08999 * 109.47475 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47476 * 300.00783 * 1 2 3 30 30 H 1.09007 * 109.47016 * 59.99999 * 1 2 3 31 31 H 1.07999 * 120.16862 * 0.04187 * 5 4 2 32 32 H 0.96992 * 120.00348 * 184.96767 * 13 12 10 33 33 H 1.07997 * 120.04218 * 0.02562 * 19 18 9 34 34 H 1.08000 * 119.95880 * 180.22687 * 20 19 18 35 35 H 1.07994 * 119.92479 * 180.02562 * 21 20 19 36 36 H 1.07995 * 119.95974 * 180.02562 * 22 21 20 37 37 H 1.07999 * 120.03742 * 180.02562 * 23 22 21 38 38 H 1.07992 * 119.90871 * 179.75073 * 24 6 5 39 39 H 1.08006 * 119.83275 * 180.23204 * 25 24 6 40 40 H 1.09004 * 109.47281 * 261.14641 * 27 26 25 41 41 H 1.09001 * 109.47322 * 21.15116 * 27 26 25 42 42 H 1.09004 * 109.47140 * 141.15165 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2429 -1.2748 0.0006 5 6 1.5469 -2.4848 0.0123 6 6 2.2526 -3.6861 0.0133 7 6 1.5251 -4.9716 0.0262 8 8 0.4048 -5.0408 -0.4412 9 7 2.1032 -6.0677 0.5562 10 6 1.4398 -7.2656 0.5434 11 1 1.3811 -7.8598 1.4434 12 6 0.8421 -7.7165 -0.6273 13 7 1.1616 -7.1725 -1.7797 14 14 -0.4155 -9.0963 -0.5625 15 1 -1.7729 -8.5207 -0.3851 16 1 -0.3676 -9.8696 -1.8293 17 1 -0.1059 -9.9951 0.5782 18 6 3.3793 -5.9819 1.1183 19 6 4.3673 -6.8849 0.7445 20 6 5.6289 -6.7938 1.2983 21 6 5.9084 -5.8086 2.2279 22 6 4.9262 -4.9110 2.6059 23 6 3.6624 -4.9962 2.0563 24 6 3.6507 -3.6725 0.0079 25 6 4.3332 -2.4723 -0.0087 26 6 3.6423 -1.2772 -0.0102 27 6 4.3965 0.0274 -0.0229 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.4670 -2.4897 0.0203 32 1 0.6932 -7.4363 -2.5871 33 1 4.1500 -7.6543 0.0184 34 1 6.3982 -7.4929 1.0056 35 1 6.8961 -5.7393 2.6592 36 1 5.1481 -4.1427 3.3317 37 1 2.8961 -4.2948 2.3515 38 1 4.1983 -4.6032 0.0127 39 1 5.4133 -2.4685 -0.0166 40 1 4.4489 0.4267 0.9900 41 1 5.4054 -0.1398 -0.4002 42 1 3.8807 0.7390 -0.6676 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193135542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:37 Heat of formation + Delta-G solvation = -5.790190 kcal Electronic energy + Delta-G solvation = -27428.403698 eV Core-core repulsion = 23724.941191 eV Total energy + Delta-G solvation = -3703.462506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.02503 -40.85320 -39.26447 -38.77086 -36.20116 -34.43024 -33.59352 -33.03608 -31.60394 -30.42569 -30.11002 -28.56516 -26.79086 -24.81529 -23.94447 -23.14839 -22.74748 -21.63395 -20.76736 -19.18324 -18.69286 -17.18933 -17.03082 -16.97049 -16.72775 -16.59293 -16.12847 -15.95355 -15.67947 -15.36230 -15.07651 -14.96344 -14.71505 -14.37238 -14.30360 -14.14681 -13.82555 -13.49400 -13.18827 -13.04273 -12.98830 -12.89069 -12.87029 -12.73251 -12.46910 -12.36045 -12.24976 -12.05312 -11.90252 -11.02525 -10.58154 -10.42407 -10.25412 -10.10650 -9.76635 -9.48143 -8.76337 -8.35023 -6.22968 -0.43167 0.04425 0.53992 0.63802 1.32769 1.36537 1.41954 1.47987 2.15897 2.30008 2.82751 2.86306 2.99408 3.10969 3.22403 3.73976 3.74541 3.93618 4.03051 4.16424 4.22385 4.25016 4.36227 4.43152 4.50866 4.59865 4.61974 4.69817 4.71899 4.80661 4.84611 4.96047 5.00969 5.08438 5.17102 5.26118 5.26973 5.35858 5.39567 5.52208 5.65584 5.74610 5.76312 5.82143 6.06168 6.24270 6.50365 6.83021 6.95319 7.42295 8.03026 8.70612 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.005311 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.872589 B = 5271.270695 C = 7126.194771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.404 3.596 3 O -0.478 6.478 4 C -0.199 4.199 5 C -0.027 4.027 6 C -0.158 4.158 7 C 0.519 3.481 8 O -0.569 6.569 9 N -0.416 5.416 10 C -0.365 4.365 11 H 0.081 0.919 12 C 0.028 3.972 13 N -0.871 5.871 14 Si 0.976 3.024 15 H -0.283 1.283 16 H -0.277 1.277 17 H -0.252 1.252 18 C 0.136 3.864 19 C -0.154 4.154 20 C -0.098 4.098 21 C -0.137 4.137 22 C -0.093 4.093 23 C -0.155 4.155 24 C -0.046 4.046 25 C -0.137 4.137 26 C -0.011 4.011 27 C -0.116 4.116 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.137 0.863 32 H 0.266 0.734 33 H 0.097 0.903 34 H 0.145 0.855 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.105 0.895 38 H 0.134 0.866 39 H 0.161 0.839 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.508 9.908 6.448 15.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.285 3.715 3 O -0.357 6.357 4 C -0.200 4.200 5 C -0.046 4.046 6 C -0.161 4.161 7 C 0.310 3.690 8 O -0.450 6.450 9 N -0.129 5.129 10 C -0.491 4.491 11 H 0.099 0.901 12 C -0.180 4.180 13 N -0.505 5.505 14 Si 0.800 3.200 15 H -0.210 1.210 16 H -0.202 1.202 17 H -0.176 1.176 18 C 0.043 3.957 19 C -0.174 4.174 20 C -0.116 4.116 21 C -0.156 4.156 22 C -0.112 4.112 23 C -0.175 4.175 24 C -0.065 4.065 25 C -0.154 4.154 26 C -0.012 4.012 27 C -0.172 4.172 28 H 0.100 0.900 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.154 0.846 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.163 0.837 35 H 0.175 0.825 36 H 0.168 0.832 37 H 0.123 0.877 38 H 0.151 0.849 39 H 0.179 0.821 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.188 10.329 5.967 15.057 hybrid contribution -1.363 -1.357 -0.548 1.999 sum 7.825 8.972 5.419 13.080 Atomic orbital electron populations 1.22286 0.91792 1.05529 1.06236 1.22606 0.92672 0.86537 0.69673 1.90443 1.72021 1.34687 1.38579 1.20379 0.94614 0.94346 1.10690 1.21535 1.00369 0.90078 0.92653 1.20107 0.94919 0.93466 1.07632 1.18731 0.85604 0.83682 0.80958 1.90543 1.21344 1.85367 1.47708 1.41028 1.11818 1.07654 1.52426 1.19270 1.36093 0.97794 0.95950 0.90135 1.26198 0.98673 0.99251 0.93829 1.69930 1.37864 1.43757 0.98919 0.85217 0.78452 0.77990 0.78382 1.20961 1.20201 1.17603 1.18524 0.85642 0.96731 0.94806 1.21132 0.93493 1.00955 1.01836 1.21264 0.94937 0.98946 0.96497 1.21379 1.00522 0.95137 0.98543 1.21183 0.91320 0.99505 0.99174 1.21131 0.99222 0.99722 0.97435 1.22196 0.92731 1.00160 0.91377 1.21196 1.01385 0.89998 1.02859 1.20659 0.92287 0.96982 0.91234 1.21113 0.99706 0.92634 1.03724 0.89952 0.86935 0.87351 0.84565 0.92460 0.88471 0.83742 0.82477 0.83203 0.87651 0.84868 0.82137 0.89929 0.89822 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.21 10.19 71.23 0.73 -3.48 16 2 C 0.40 10.84 7.20 28.04 0.20 11.04 16 3 O -0.48 -13.91 14.01 -2.94 -0.04 -13.95 16 4 C -0.20 -6.08 5.86 -20.18 -0.12 -6.20 16 5 C -0.03 -0.99 8.99 22.86 0.21 -0.79 16 6 C -0.16 -6.66 4.59 -20.13 -0.09 -6.76 16 7 C 0.52 27.50 6.57 86.75 0.57 28.07 16 8 O -0.57 -34.50 14.74 -3.97 -0.06 -34.56 16 9 N -0.42 -21.65 2.62 -462.05 -1.21 -22.86 16 10 C -0.36 -20.48 8.58 84.07 0.72 -19.76 16 11 H 0.08 4.43 7.88 -2.91 -0.02 4.40 16 12 C 0.03 1.56 4.48 84.94 0.38 1.94 16 13 N -0.87 -52.28 11.95 21.67 0.26 -52.02 16 14 Si 0.98 44.77 29.59 68.60 2.03 46.80 16 15 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 16 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 17 H -0.25 -10.70 7.11 99.48 0.71 -10.00 16 18 C 0.14 5.78 3.41 38.24 0.13 5.91 16 19 C -0.15 -5.98 8.94 22.41 0.20 -5.78 16 20 C -0.10 -2.75 10.04 22.25 0.22 -2.52 16 21 C -0.14 -3.15 10.04 22.31 0.22 -2.93 16 22 C -0.09 -2.38 9.94 22.25 0.22 -2.16 16 23 C -0.15 -5.36 6.03 22.41 0.14 -5.23 16 24 C -0.05 -1.66 6.48 22.61 0.15 -1.51 16 25 C -0.14 -3.81 9.63 22.19 0.21 -3.60 16 26 C -0.01 -0.31 5.93 -19.50 -0.12 -0.42 16 27 C -0.12 -2.56 8.72 71.24 0.62 -1.94 16 28 H 0.08 1.83 5.60 -2.39 -0.01 1.81 16 29 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.14 4.89 5.73 -2.91 -0.02 4.87 16 32 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 33 H 0.10 4.33 7.94 -2.91 -0.02 4.31 16 34 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 35 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 37 H 0.11 3.83 7.15 -2.91 -0.02 3.81 16 38 H 0.13 5.07 4.42 -2.91 -0.01 5.05 16 39 H 0.16 3.35 8.04 -2.91 -0.02 3.33 16 40 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 41 H 0.08 1.44 8.01 -2.39 -0.02 1.42 16 42 H 0.08 2.04 5.84 -2.38 -0.01 2.02 16 Total: -1.00 -74.09 347.36 6.63 -67.46 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 1.05 Total: 25.24 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 4.59 Total: -16.10 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -0.95 Total: -74.88 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -0.10 Total: -48.51 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -74.09 6.63 -67.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193135542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.668 kcal (2) G-P(sol) polarization free energy of solvation -74.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds