Wall clock time and date at job start Tue Mar 31 2020 14:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21248 * 120.00435 * 2 1 4 4 C 1.47184 * 119.99826 * 180.02562 * 2 1 3 5 5 C 1.39617 * 120.10213 * 353.84782 * 4 2 1 6 6 C 1.39253 * 119.67693 * 180.02562 * 5 4 2 7 7 C 1.47823 * 120.06140 * 179.97438 * 6 5 4 8 8 O 1.21560 * 119.99790 * 359.73319 * 7 6 5 9 9 N 1.34769 * 119.99868 * 180.02562 * 7 6 5 10 10 C 1.39130 * 119.99902 * 175.77497 * 9 7 6 11 11 C 1.39515 * 119.83846 * 220.01684 * 10 9 7 12 12 C 1.36354 * 120.16587 * 179.71999 * 11 10 9 13 13 C 1.40881 * 119.83101 * 0.55283 * 12 11 10 14 14 C 1.41140 * 120.16135 * 179.69768 * 13 12 11 15 15 H 1.07999 * 119.99496 * 159.03610 * 14 13 12 16 16 C 1.39908 * 119.99874 * 339.04393 * 14 13 12 17 17 N 1.30864 * 120.00192 * 331.37642 * 16 14 13 18 18 Si 1.86800 * 119.99651 * 151.37906 * 16 14 13 19 19 H 1.48508 * 109.47200 * 94.98687 * 18 16 14 20 20 H 1.48505 * 109.47107 * 214.98483 * 18 16 14 21 21 H 1.48498 * 109.47402 * 334.98236 * 18 16 14 22 22 C 1.40877 * 119.67635 * 359.71993 * 13 12 11 23 23 C 1.36357 * 119.83163 * 0.02562 * 22 13 12 24 24 C 1.39767 * 119.87846 * 0.25908 * 6 5 4 25 25 C 1.38097 * 120.19387 * 359.50837 * 24 6 5 26 26 C 1.38029 * 120.32928 * 0.46869 * 25 24 6 27 27 C 1.50704 * 119.93732 * 179.76427 * 26 25 24 28 28 H 1.09001 * 109.47403 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46684 * 299.99647 * 1 2 3 30 30 H 1.08997 * 109.47614 * 59.99417 * 1 2 3 31 31 H 1.08004 * 120.15772 * 0.05185 * 5 4 2 32 32 H 0.97001 * 120.00548 * 355.78047 * 9 7 6 33 33 H 1.07998 * 119.91421 * 359.97438 * 11 10 9 34 34 H 1.08004 * 120.08550 * 180.27239 * 12 11 10 35 35 H 0.97007 * 119.99777 * 179.97438 * 17 16 14 36 36 H 1.08002 * 120.08421 * 179.97438 * 22 13 12 37 37 H 1.08003 * 119.91868 * 179.97438 * 23 22 13 38 38 H 1.07996 * 119.90585 * 179.72264 * 24 6 5 39 39 H 1.08003 * 119.83179 * 180.23172 * 25 24 6 40 40 H 1.09003 * 109.47005 * 262.40590 * 27 26 25 41 41 H 1.08990 * 109.47134 * 22.41124 * 27 26 25 42 42 H 1.09001 * 109.46953 * 142.40975 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2747 -0.0006 5 6 1.5529 -2.4816 0.1283 6 6 2.2581 -3.6824 0.1272 7 6 1.5362 -4.9651 0.2637 8 8 0.3264 -4.9721 0.3820 9 7 2.2200 -6.1265 0.2630 10 6 1.5516 -7.3274 0.4794 11 6 2.1390 -8.3162 1.2691 12 6 1.4874 -9.4934 1.4902 13 6 0.2231 -9.7144 0.9095 14 6 -0.4548 -10.9329 1.1286 15 1 -1.5241 -10.9887 0.9879 16 6 0.2586 -12.0682 1.5281 17 7 1.5123 -12.2091 1.1805 18 14 -0.5787 -13.3827 2.5578 19 1 -1.0941 -14.4545 1.6684 20 1 0.3999 -13.9607 3.5137 21 1 -1.7074 -12.7782 3.3100 22 6 -0.3612 -8.7135 0.1086 23 6 0.3001 -7.5392 -0.0994 24 6 3.6502 -3.6722 0.0028 25 6 4.3270 -2.4757 -0.1292 26 6 3.6363 -1.2806 -0.1296 27 6 4.3843 0.0202 -0.2689 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.4775 -2.4839 0.2280 32 1 3.1781 -6.1252 0.1117 33 1 3.1105 -8.1473 1.7097 34 1 1.9414 -10.2563 2.1054 35 1 2.0070 -12.9961 1.4579 36 1 -1.3300 -8.8760 -0.3402 37 1 -0.1464 -6.7711 -0.7134 38 1 4.1979 -4.6030 0.0064 39 1 5.4024 -2.4749 -0.2287 40 1 4.5411 0.4566 0.7176 41 1 5.3486 -0.1640 -0.7422 42 1 3.8040 0.7091 -0.8828 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193703692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:21 Heat of formation + Delta-G solvation = -26.242333 kcal Electronic energy + Delta-G solvation = -25275.117781 eV Core-core repulsion = 21570.768403 eV Total energy + Delta-G solvation = -3704.349378 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.69943 -39.63789 -38.17254 -37.13216 -34.59391 -33.35266 -32.95239 -32.22226 -29.64255 -29.61700 -29.12304 -27.49324 -25.13416 -23.89316 -22.79110 -21.47773 -20.95631 -20.52460 -19.33059 -17.88838 -17.38632 -16.66150 -15.92699 -15.70790 -15.65279 -15.41378 -15.23194 -14.65605 -14.43372 -14.23796 -14.01430 -13.74675 -13.67850 -13.16729 -12.72621 -12.59100 -12.42184 -12.20162 -12.18698 -12.12628 -12.07625 -11.97711 -11.54181 -11.45713 -11.17379 -10.97793 -10.57875 -10.21109 -9.79817 -9.76745 -9.53691 -9.31954 -9.21001 -8.98992 -8.73319 -7.59674 -7.18173 -6.93063 -4.33336 0.32322 0.80717 2.03339 2.59189 2.94948 3.02181 3.06149 3.08516 3.22050 3.57170 3.78102 3.82374 3.85525 4.41865 4.47067 4.51611 4.69332 4.85313 4.88371 5.04806 5.15329 5.16238 5.32628 5.40232 5.48124 5.63857 5.66427 5.70425 5.84211 5.95794 6.04135 6.15301 6.22833 6.37163 6.50458 6.72019 6.91484 6.95705 7.11129 7.23343 7.25280 7.52568 7.65107 7.83398 7.97287 8.19969 8.21453 8.50377 8.67625 8.79599 8.94188 9.99447 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.031568 B = 0.002255 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.750057 B =12415.640447 C =13070.646687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.399 3.601 3 O -0.458 6.458 4 C -0.187 4.187 5 C -0.013 4.013 6 C -0.141 4.141 7 C 0.540 3.460 8 O -0.530 6.530 9 N -0.640 5.640 10 C -0.026 4.026 11 C -0.100 4.100 12 C -0.169 4.169 13 C 0.112 3.888 14 C -0.459 4.459 15 H 0.082 0.918 16 C 0.083 3.917 17 N -0.773 5.773 18 Si 0.900 3.100 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.258 1.258 22 C -0.225 4.225 23 C -0.062 4.062 24 C -0.053 4.053 25 C -0.142 4.142 26 C -0.008 4.008 27 C -0.123 4.123 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.148 0.852 32 H 0.393 0.607 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.283 0.717 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.023 16.812 -1.975 17.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.279 3.721 3 O -0.335 6.335 4 C -0.188 4.188 5 C -0.032 4.032 6 C -0.144 4.144 7 C 0.328 3.672 8 O -0.408 6.408 9 N -0.283 5.283 10 C -0.118 4.118 11 C -0.120 4.120 12 C -0.189 4.189 13 C 0.109 3.891 14 C -0.487 4.487 15 H 0.100 0.900 16 C -0.138 4.138 17 N -0.396 5.396 18 Si 0.724 3.276 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.181 1.181 22 C -0.245 4.245 23 C -0.082 4.082 24 C -0.072 4.072 25 C -0.160 4.160 26 C -0.009 4.009 27 C -0.179 4.179 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.166 0.834 32 H 0.227 0.773 33 H 0.107 0.893 34 H 0.131 0.869 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.685 17.181 -1.884 18.195 hybrid contribution 0.295 -0.960 0.402 1.082 sum 5.980 16.221 -1.481 17.352 Atomic orbital electron populations 1.22276 0.93553 1.05405 1.04973 1.22420 0.91709 0.87333 0.70685 1.90485 1.71538 1.34515 1.36981 1.20319 0.94013 0.94866 1.09590 1.21648 1.00927 0.89831 0.90792 1.20086 0.93808 0.94233 1.06295 1.18143 0.87405 0.83353 0.78327 1.90765 1.13416 1.87015 1.49597 1.42809 1.10773 1.05135 1.69579 1.17015 0.97343 0.86877 1.10546 1.20198 0.98656 0.94695 0.98488 1.20718 0.97505 0.96275 1.04364 1.17631 0.91293 0.92169 0.87960 1.19566 0.95815 0.93428 1.39842 0.90013 1.25969 0.94565 0.99392 0.93847 1.69913 1.10226 1.27213 1.32292 0.86428 0.80607 0.80106 0.80460 1.19431 1.19871 1.18115 1.20593 1.01527 0.95986 1.06391 1.20259 0.93913 0.96161 0.97835 1.21623 0.93266 0.98743 0.93531 1.21006 1.00396 0.91317 1.03249 1.20394 0.92478 0.96172 0.91829 1.21125 0.99321 0.94066 1.03413 0.89394 0.88614 0.88643 0.83404 0.77277 0.89254 0.86911 0.90581 0.88677 0.88176 0.84951 0.84775 0.90318 0.91939 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.56 10.19 36.01 0.37 -1.19 16 2 C 0.40 4.12 7.16 -30.68 -0.22 3.90 16 3 O -0.46 -5.59 14.09 5.59 0.08 -5.51 16 4 C -0.19 -2.06 5.86 -105.11 -0.62 -2.67 16 5 C -0.01 -0.16 8.97 -38.69 -0.35 -0.50 16 6 C -0.14 -1.87 5.87 -105.03 -0.62 -2.49 16 7 C 0.54 9.37 7.57 -12.34 -0.09 9.28 16 8 O -0.53 -11.09 14.11 5.31 0.07 -11.01 16 9 N -0.64 -11.14 5.23 -10.60 -0.06 -11.19 16 10 C -0.03 -0.57 6.20 -83.60 -0.52 -1.09 16 11 C -0.10 -2.25 9.90 -39.78 -0.39 -2.65 16 12 C -0.17 -4.25 8.71 -39.26 -0.34 -4.59 16 13 C 0.11 2.95 5.59 -106.80 -0.60 2.36 16 14 C -0.46 -11.91 8.97 -37.86 -0.34 -12.25 16 15 H 0.08 2.05 7.99 -52.49 -0.42 1.63 16 16 C 0.08 2.02 4.89 -17.34 -0.08 1.94 16 17 N -0.77 -19.14 11.43 55.55 0.63 -18.51 16 18 Si 0.90 17.93 29.64 -169.99 -5.04 12.89 16 19 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 22 C -0.22 -5.63 9.74 -39.26 -0.38 -6.02 16 23 C -0.06 -1.46 8.58 -39.79 -0.34 -1.81 16 24 C -0.05 -0.55 9.54 -39.06 -0.37 -0.93 16 25 C -0.14 -1.32 9.64 -39.71 -0.38 -1.70 16 26 C -0.01 -0.08 5.93 -104.06 -0.62 -0.70 16 27 C -0.12 -1.09 8.68 36.01 0.31 -0.78 16 28 H 0.09 0.64 5.64 -51.93 -0.29 0.35 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.15 1.71 5.56 -52.48 -0.29 1.42 16 32 H 0.39 5.35 6.86 -40.82 -0.28 5.07 16 33 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.11 2.88 6.31 -52.48 -0.33 2.55 16 35 H 0.28 6.30 8.30 -40.82 -0.34 5.97 16 36 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 37 H 0.10 2.32 6.62 -52.48 -0.35 1.97 16 38 H 0.13 1.11 6.40 -52.49 -0.34 0.77 16 39 H 0.13 0.90 8.05 -52.48 -0.42 0.47 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.43 8.02 -51.93 -0.42 0.02 16 42 H 0.09 0.91 5.92 -51.93 -0.31 0.60 16 LS Contribution 354.02 15.07 5.33 5.33 Total: -1.00 -30.51 354.02 -9.25 -39.75 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -4.69 Total: 10.12 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -5.59 Total: -21.88 kcal Atomic # 7 Polarization: -30.28 SS G_CDS: 0.58 Total: -29.70 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.15 Total: -16.52 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.04 Total: 12.89 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.51 -9.25 -39.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193703692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.512 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds