Wall clock time and date at job start Tue Mar 31 2020 14:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21248 * 120.00435 * 2 1 4 4 C 1.47184 * 119.99826 * 180.02562 * 2 1 3 5 5 C 1.39617 * 120.10213 * 353.84782 * 4 2 1 6 6 C 1.39253 * 119.67693 * 180.02562 * 5 4 2 7 7 C 1.47823 * 120.06140 * 179.97438 * 6 5 4 8 8 O 1.21560 * 119.99790 * 359.73319 * 7 6 5 9 9 N 1.34769 * 119.99868 * 180.02562 * 7 6 5 10 10 C 1.39130 * 119.99902 * 175.77497 * 9 7 6 11 11 C 1.39515 * 119.83846 * 220.01684 * 10 9 7 12 12 C 1.36354 * 120.16587 * 179.71999 * 11 10 9 13 13 C 1.40881 * 119.83101 * 0.55283 * 12 11 10 14 14 C 1.41140 * 120.16135 * 179.69768 * 13 12 11 15 15 H 1.07999 * 119.99496 * 159.03610 * 14 13 12 16 16 C 1.39908 * 119.99874 * 339.04393 * 14 13 12 17 17 N 1.30864 * 120.00192 * 331.37642 * 16 14 13 18 18 Si 1.86800 * 119.99651 * 151.37906 * 16 14 13 19 19 H 1.48508 * 109.47200 * 94.98687 * 18 16 14 20 20 H 1.48505 * 109.47107 * 214.98483 * 18 16 14 21 21 H 1.48498 * 109.47402 * 334.98236 * 18 16 14 22 22 C 1.40877 * 119.67635 * 359.71993 * 13 12 11 23 23 C 1.36357 * 119.83163 * 0.02562 * 22 13 12 24 24 C 1.39767 * 119.87846 * 0.25908 * 6 5 4 25 25 C 1.38097 * 120.19387 * 359.50837 * 24 6 5 26 26 C 1.38029 * 120.32928 * 0.46869 * 25 24 6 27 27 C 1.50704 * 119.93732 * 179.76427 * 26 25 24 28 28 H 1.09001 * 109.47403 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46684 * 299.99647 * 1 2 3 30 30 H 1.08997 * 109.47614 * 59.99417 * 1 2 3 31 31 H 1.08004 * 120.15772 * 0.05185 * 5 4 2 32 32 H 0.97001 * 120.00548 * 355.78047 * 9 7 6 33 33 H 1.07998 * 119.91421 * 359.97438 * 11 10 9 34 34 H 1.08004 * 120.08550 * 180.27239 * 12 11 10 35 35 H 0.97007 * 119.99777 * 179.97438 * 17 16 14 36 36 H 1.08002 * 120.08421 * 179.97438 * 22 13 12 37 37 H 1.08003 * 119.91868 * 179.97438 * 23 22 13 38 38 H 1.07996 * 119.90585 * 179.72264 * 24 6 5 39 39 H 1.08003 * 119.83179 * 180.23172 * 25 24 6 40 40 H 1.09003 * 109.47005 * 262.40590 * 27 26 25 41 41 H 1.08990 * 109.47134 * 22.41124 * 27 26 25 42 42 H 1.09001 * 109.46953 * 142.40975 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2747 -0.0006 5 6 1.5529 -2.4816 0.1283 6 6 2.2581 -3.6824 0.1272 7 6 1.5362 -4.9651 0.2637 8 8 0.3264 -4.9721 0.3820 9 7 2.2200 -6.1265 0.2630 10 6 1.5516 -7.3274 0.4794 11 6 2.1390 -8.3162 1.2691 12 6 1.4874 -9.4934 1.4902 13 6 0.2231 -9.7144 0.9095 14 6 -0.4548 -10.9329 1.1286 15 1 -1.5241 -10.9887 0.9879 16 6 0.2586 -12.0682 1.5281 17 7 1.5123 -12.2091 1.1805 18 14 -0.5787 -13.3827 2.5578 19 1 -1.0941 -14.4545 1.6684 20 1 0.3999 -13.9607 3.5137 21 1 -1.7074 -12.7782 3.3100 22 6 -0.3612 -8.7135 0.1086 23 6 0.3001 -7.5392 -0.0994 24 6 3.6502 -3.6722 0.0028 25 6 4.3270 -2.4757 -0.1292 26 6 3.6363 -1.2806 -0.1296 27 6 4.3843 0.0202 -0.2689 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.4775 -2.4839 0.2280 32 1 3.1781 -6.1252 0.1117 33 1 3.1105 -8.1473 1.7097 34 1 1.9414 -10.2563 2.1054 35 1 2.0070 -12.9961 1.4579 36 1 -1.3300 -8.8760 -0.3402 37 1 -0.1464 -6.7711 -0.7134 38 1 4.1979 -4.6030 0.0064 39 1 5.4024 -2.4749 -0.2287 40 1 4.5411 0.4566 0.7176 41 1 5.3486 -0.1640 -0.7422 42 1 3.8040 0.7091 -0.8828 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193703692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:21 Heat of formation + Delta-G solvation = -42.029930 kcal Electronic energy + Delta-G solvation = -25275.802382 eV Core-core repulsion = 21570.768403 eV Total energy + Delta-G solvation = -3705.033980 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.72816 -40.87353 -39.38214 -38.63072 -36.26558 -34.92745 -33.90729 -33.15648 -31.47458 -30.87872 -30.35779 -28.47896 -26.75735 -24.81469 -24.06244 -23.08470 -22.37261 -21.78260 -20.53883 -19.32343 -19.02205 -18.04019 -17.08938 -16.87822 -16.65215 -16.58948 -16.31127 -16.05677 -15.75427 -15.38130 -15.11035 -14.92573 -14.86007 -14.44397 -14.37067 -13.98136 -13.77134 -13.39505 -13.24222 -13.07750 -12.97653 -12.91535 -12.85805 -12.81059 -12.64728 -12.42686 -12.33086 -11.90115 -11.58266 -11.19986 -10.91167 -10.55348 -10.46723 -10.14319 -9.89313 -9.48580 -9.00269 -8.73406 -6.25497 -0.52677 -0.12119 0.84514 1.14259 1.22890 1.38817 1.46135 1.56115 1.92490 2.19887 2.25144 2.62740 2.78758 3.02666 3.57005 3.65096 3.72365 3.87198 3.93390 4.11371 4.27953 4.38235 4.44723 4.47713 4.55048 4.59177 4.65696 4.78712 4.89347 4.92935 5.04106 5.06424 5.10200 5.14401 5.18549 5.22614 5.28989 5.42096 5.46061 5.63794 5.70292 5.88956 6.02018 6.08148 6.34291 6.46190 6.60827 6.68029 6.88930 6.97172 7.33465 8.21782 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.031568 B = 0.002255 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.750057 B =12415.640447 C =13070.646687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.398 3.602 3 O -0.480 6.480 4 C -0.197 4.197 5 C -0.016 4.016 6 C -0.162 4.162 7 C 0.543 3.457 8 O -0.572 6.572 9 N -0.635 5.635 10 C -0.011 4.011 11 C -0.098 4.098 12 C -0.188 4.188 13 C 0.083 3.917 14 C -0.498 4.498 15 H 0.075 0.925 16 C 0.047 3.953 17 N -0.801 5.801 18 Si 0.975 3.025 19 H -0.260 1.260 20 H -0.261 1.261 21 H -0.262 1.262 22 C -0.245 4.245 23 C -0.073 4.073 24 C -0.044 4.044 25 C -0.134 4.134 26 C -0.009 4.009 27 C -0.121 4.121 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.145 0.855 32 H 0.414 0.586 33 H 0.124 0.876 34 H 0.104 0.896 35 H 0.294 0.706 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.157 0.843 39 H 0.170 0.830 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.141 17.724 -1.626 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.280 3.720 3 O -0.358 6.358 4 C -0.198 4.198 5 C -0.034 4.034 6 C -0.165 4.165 7 C 0.333 3.667 8 O -0.453 6.453 9 N -0.280 5.280 10 C -0.104 4.104 11 C -0.118 4.118 12 C -0.208 4.208 13 C 0.080 3.920 14 C -0.526 4.526 15 H 0.093 0.907 16 C -0.172 4.172 17 N -0.425 5.425 18 Si 0.795 3.205 19 H -0.185 1.185 20 H -0.185 1.185 21 H -0.186 1.186 22 C -0.265 4.265 23 C -0.093 4.093 24 C -0.063 4.063 25 C -0.151 4.151 26 C -0.010 4.010 27 C -0.177 4.177 28 H 0.107 0.893 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.163 0.837 32 H 0.252 0.748 33 H 0.142 0.858 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.174 0.826 39 H 0.187 0.813 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.842 18.113 -1.553 19.798 hybrid contribution -0.273 -1.026 0.222 1.084 sum 7.569 17.087 -1.331 18.736 Atomic orbital electron populations 1.22302 0.91686 1.05861 1.06124 1.22711 0.92776 0.86765 0.69774 1.90483 1.72149 1.34987 1.38198 1.20446 0.94728 0.94653 1.09964 1.21662 1.01001 0.90017 0.90769 1.19780 0.94994 0.92113 1.09599 1.18743 0.87038 0.84390 0.76540 1.90745 1.15516 1.87732 1.51292 1.42685 1.11759 1.03774 1.69770 1.17070 0.96606 0.88168 1.08557 1.20472 0.99779 0.93688 0.97866 1.20751 0.97635 0.97330 1.05064 1.17947 0.92324 0.92864 0.88850 1.19761 0.95800 0.94564 1.42472 0.90683 1.26740 0.95170 1.01073 0.94168 1.69913 1.11408 1.28413 1.32744 0.85318 0.79384 0.77131 0.78697 1.18466 1.18500 1.18592 1.20725 1.01964 0.96759 1.07076 1.20377 0.94934 0.95664 0.98300 1.21869 0.91938 1.00420 0.92060 1.21356 1.02009 0.90126 1.01620 1.20762 0.92328 0.97380 0.90511 1.21124 1.00109 0.93005 1.03417 0.89293 0.87484 0.87315 0.83726 0.74777 0.85818 0.87786 0.89507 0.88875 0.88174 0.82593 0.81303 0.90255 0.89452 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.88 10.19 71.24 0.73 -2.15 16 2 C 0.40 7.82 7.16 28.04 0.20 8.02 16 3 O -0.48 -11.21 14.09 -2.93 -0.04 -11.25 16 4 C -0.20 -4.04 5.86 -20.18 -0.12 -4.16 16 5 C -0.02 -0.36 8.97 22.85 0.20 -0.16 16 6 C -0.16 -4.03 5.87 -20.13 -0.12 -4.15 16 7 C 0.54 18.40 7.57 86.78 0.66 19.06 16 8 O -0.57 -24.23 14.11 -3.91 -0.06 -24.29 16 9 N -0.63 -21.09 5.23 -305.73 -1.60 -22.69 16 10 C -0.01 -0.48 6.20 38.60 0.24 -0.24 16 11 C -0.10 -4.34 9.90 22.14 0.22 -4.12 16 12 C -0.19 -9.62 8.71 22.48 0.20 -9.43 16 13 C 0.08 4.53 5.59 -21.27 -0.12 4.41 16 14 C -0.50 -26.90 8.97 23.39 0.21 -26.69 16 15 H 0.08 3.97 7.99 -2.91 -0.02 3.95 16 16 C 0.05 2.32 4.89 85.24 0.42 2.74 16 17 N -0.80 -40.10 11.43 21.82 0.25 -39.85 16 18 Si 0.97 36.99 29.64 68.60 2.03 39.02 16 19 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 20 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 C -0.25 -12.82 9.74 22.48 0.22 -12.60 16 23 C -0.07 -3.53 8.58 22.14 0.19 -3.34 16 24 C -0.04 -0.78 9.54 22.61 0.22 -0.57 16 25 C -0.13 -1.95 9.64 22.19 0.21 -1.74 16 26 C -0.01 -0.16 5.93 -19.50 -0.12 -0.28 16 27 C -0.12 -1.81 8.68 71.24 0.62 -1.20 16 28 H 0.09 1.25 5.64 -2.39 -0.01 1.23 16 29 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.15 3.37 5.56 -2.91 -0.02 3.35 16 32 H 0.41 10.09 6.86 -92.71 -0.64 9.46 16 33 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 34 H 0.10 5.42 6.31 -2.91 -0.02 5.40 16 35 H 0.29 13.05 8.30 -92.70 -0.77 12.28 16 36 H 0.09 4.71 8.06 -2.91 -0.02 4.68 16 37 H 0.10 4.78 6.62 -2.91 -0.02 4.76 16 38 H 0.16 1.94 6.40 -2.91 -0.02 1.92 16 39 H 0.17 1.33 8.05 -2.91 -0.02 1.30 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.09 0.87 8.02 -2.39 -0.02 0.85 16 42 H 0.08 1.44 5.92 -2.39 -0.01 1.42 16 Total: -1.00 -68.53 354.02 5.09 -63.44 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: 0.45 Total: 32.19 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 4.06 Total: -36.58 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -1.35 Total: -62.53 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -0.10 Total: -35.54 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 2.03 Total: 39.02 kcal Total: -68.53 5.09 -63.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193703692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.414 kcal (2) G-P(sol) polarization free energy of solvation -68.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds