Wall clock time and date at job start Tue Mar 31 2020 13:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99719 * 2 1 4 4 H 1.48498 * 109.46931 * 269.99365 * 3 2 1 5 5 H 1.48496 * 109.47476 * 29.99997 * 3 2 1 6 6 H 1.48504 * 109.46989 * 149.99790 * 3 2 1 7 7 C 1.37881 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99568 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99910 * 0.02562 * 7 2 1 10 10 O 1.42899 * 113.01995 * 48.34182 * 9 7 2 11 11 C 1.53947 * 113.73728 * 179.97438 * 9 7 2 12 12 N 1.47584 * 86.11565 * 137.95278 * 11 9 7 13 13 C 1.34776 * 134.49098 * 155.35611 * 12 11 9 14 14 O 1.21284 * 119.99987 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99842 * 179.97438 * 13 12 11 16 16 C 1.53003 * 109.46965 * 180.02562 * 15 13 12 17 17 C 1.52995 * 109.47105 * 180.02562 * 16 15 13 18 18 C 1.52992 * 109.47396 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.47506 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.47281 * 179.97438 * 19 18 17 21 21 C 1.33390 * 125.19837 * 90.00473 * 20 19 18 22 22 C 1.38422 * 114.91895 * 179.97438 * 21 20 19 23 23 C 1.33389 * 114.92170 * 359.97438 * 22 21 20 24 24 S 1.75879 * 125.20518 * 269.69417 * 20 19 18 25 25 C 1.47576 * 91.01498 * 335.35788 * 12 11 9 26 26 H 0.97003 * 120.00094 * 0.02562 * 1 2 3 27 27 H 0.96703 * 113.99221 * 311.65869 * 10 9 7 28 28 H 1.09001 * 113.76955 * 252.25313 * 11 9 7 29 29 H 1.08997 * 113.77064 * 23.65389 * 11 9 7 30 30 H 1.08998 * 109.47224 * 300.00580 * 15 13 12 31 31 H 1.09001 * 109.46453 * 60.00411 * 15 13 12 32 32 H 1.09000 * 109.47204 * 300.00684 * 16 15 13 33 33 H 1.09002 * 109.46888 * 60.00442 * 16 15 13 34 34 H 1.08998 * 109.47036 * 300.00490 * 17 16 15 35 35 H 1.09002 * 109.47005 * 60.00369 * 17 16 15 36 36 H 1.08998 * 109.47267 * 300.00150 * 18 17 16 37 37 H 1.08997 * 109.47196 * 59.99748 * 18 17 16 38 38 H 1.08998 * 109.46991 * 300.00332 * 19 18 17 39 39 H 1.09001 * 109.46436 * 60.00010 * 19 18 17 40 40 H 1.07999 * 122.54049 * 359.95050 * 21 20 19 41 41 H 1.08003 * 122.54596 * 180.02562 * 22 21 20 42 42 H 1.08004 * 125.20553 * 180.02562 * 23 22 21 43 43 H 1.09003 * 113.77250 * 270.33779 * 25 12 11 44 44 H 1.09001 * 113.87174 * 138.94936 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.2149 -2.5462 -0.9825 11 6 2.1615 -3.7405 0.0005 12 7 1.2207 -4.3066 0.9867 13 6 0.8823 -5.5567 1.3598 14 8 1.4099 -6.5115 0.8297 15 6 -0.1509 -5.7681 2.4364 16 6 -0.3473 -7.2678 2.6672 17 6 -1.3966 -7.4824 3.7598 18 6 -1.5926 -8.9820 3.9911 19 6 -2.6415 -9.1967 5.0842 20 6 -2.8350 -10.6738 5.3116 21 6 -2.1487 -11.4138 6.1837 22 6 -2.5018 -12.7518 6.2183 23 6 -3.4753 -13.0982 5.3747 24 16 -4.0054 -11.6840 4.4732 25 6 0.7993 -2.9541 1.4002 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3593 -1.7681 -0.9861 28 1 2.1762 -4.2746 -0.9495 29 1 3.1581 -3.5543 0.4007 30 1 0.1866 -5.2996 3.3608 31 1 -1.0954 -5.3210 2.1262 32 1 -0.6845 -7.7366 1.7428 33 1 0.5974 -7.7144 2.9775 34 1 -1.0597 -7.0135 4.6842 35 1 -2.3412 -7.0359 3.4491 36 1 -1.9293 -9.4513 3.0668 37 1 -0.6480 -9.4282 4.3020 38 1 -2.3044 -8.7274 6.0084 39 1 -3.5863 -8.7504 4.7736 40 1 -1.3758 -11.0005 6.8148 41 1 -2.0259 -13.4614 6.8790 42 1 -3.8789 -14.0939 5.2648 43 1 1.3957 -2.5368 2.2115 44 1 -0.2735 -2.8583 1.5682 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193985728.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:22 Heat of formation + Delta-G solvation = -60.967699 kcal Electronic energy + Delta-G solvation = -23618.366547 eV Core-core repulsion = 20047.955315 eV Total energy + Delta-G solvation = -3570.411232 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.18361 -39.24723 -38.90908 -36.84469 -35.80945 -34.12673 -33.91371 -31.10599 -29.86888 -27.80014 -26.98417 -26.64774 -24.58771 -22.94325 -21.94767 -21.56127 -20.10762 -19.85546 -19.20695 -18.02038 -17.76552 -17.23157 -17.08470 -16.56006 -16.42753 -16.08398 -15.89847 -15.19220 -14.74665 -14.66069 -14.31018 -14.25133 -13.89286 -13.78680 -13.55260 -13.47528 -13.41067 -13.27216 -12.85128 -12.79023 -12.71357 -12.53125 -12.22580 -12.19962 -12.01674 -11.93826 -11.82673 -11.57811 -11.38676 -11.36942 -10.89734 -10.62176 -10.22997 -9.55846 -9.51865 -9.39923 -8.26326 -6.43411 0.10655 0.74547 1.12344 1.47076 1.50780 1.59396 1.67427 1.86355 2.00138 2.41323 2.96133 3.46021 3.72509 3.81825 3.98359 4.05033 4.17139 4.19335 4.23799 4.27388 4.45900 4.50628 4.56524 4.61281 4.63670 4.73950 4.77239 4.82263 4.85942 4.88300 4.93255 5.00745 5.02132 5.05696 5.23847 5.26499 5.28856 5.40026 5.44087 5.50030 5.63668 5.73390 5.92657 6.61982 6.89370 7.17788 7.30591 7.47854 8.79455 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.032938 B = 0.001712 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.868271 B =16350.504479 C =16541.296428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.033 3.967 3 Si 0.969 3.031 4 H -0.280 1.280 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.556 4.556 8 H 0.071 0.929 9 C 0.216 3.784 10 O -0.588 6.588 11 C 0.107 3.893 12 N -0.638 5.638 13 C 0.516 3.484 14 O -0.603 6.603 15 C -0.124 4.124 16 C -0.096 4.096 17 C -0.110 4.110 18 C -0.108 4.108 19 C -0.047 4.047 20 C -0.178 4.178 21 C -0.153 4.153 22 C -0.141 4.141 23 C -0.223 4.223 24 S 0.067 5.933 25 C 0.094 3.906 26 H 0.276 0.724 27 H 0.389 0.611 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.152 0.848 41 H 0.158 0.842 42 H 0.181 0.819 43 H 0.094 0.906 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.653 -16.991 14.928 23.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.167 4.167 3 Si 0.794 3.206 4 H -0.206 1.206 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.594 4.594 8 H 0.089 0.911 9 C 0.175 3.825 10 O -0.401 6.401 11 C -0.016 4.016 12 N -0.371 5.371 13 C 0.308 3.692 14 O -0.486 6.486 15 C -0.164 4.164 16 C -0.134 4.134 17 C -0.147 4.147 18 C -0.147 4.147 19 C -0.086 4.086 20 C -0.295 4.295 21 C -0.183 4.183 22 C -0.172 4.172 23 C -0.358 4.358 24 S 0.330 5.670 25 C -0.028 4.028 26 H 0.086 0.914 27 H 0.244 0.756 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.130 0.870 31 H 0.118 0.882 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.169 0.831 41 H 0.175 0.825 42 H 0.198 0.802 43 H 0.112 0.888 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.437 -17.896 13.480 23.941 hybrid contribution 1.207 0.984 0.732 1.721 sum -7.231 -16.912 14.212 23.244 Atomic orbital electron populations 1.69373 1.07057 1.28937 1.50282 1.25738 0.95784 1.02539 0.92658 0.85388 0.78743 0.78380 0.78113 1.20596 1.20483 1.19089 1.21732 0.94142 0.90815 1.52722 0.91061 1.20149 0.85547 0.91721 0.85060 1.86045 1.46687 1.48762 1.58608 1.23447 0.94656 0.92015 0.91452 1.50287 1.41773 1.05381 1.39671 1.21269 0.83675 0.80418 0.83797 1.90601 1.58148 1.41123 1.58716 1.21645 0.97685 0.99878 0.97165 1.21269 0.99858 0.92929 0.99335 1.21549 0.98658 0.96038 0.98499 1.21529 0.98838 0.96227 0.98074 1.20208 1.00037 0.87849 1.00503 1.24776 1.01671 1.00797 1.02301 1.20427 1.02657 0.93905 1.01337 1.20473 0.98827 0.96674 1.01179 1.25893 1.04271 1.02736 1.02871 1.84433 1.38643 1.01106 1.42802 1.24080 1.00250 0.77404 1.01093 0.91370 0.75621 0.92733 0.88176 0.87046 0.88221 0.93220 0.92380 0.90073 0.90949 0.92856 0.91849 0.88512 0.90340 0.83089 0.82485 0.80201 0.88793 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.18 11.08 21.45 0.24 -44.95 16 2 C 0.03 1.61 5.39 84.66 0.46 2.07 16 3 Si 0.97 38.66 29.54 68.60 2.03 40.69 16 4 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 7 C -0.56 -27.37 8.62 25.60 0.22 -27.15 16 8 H 0.07 3.42 7.81 -2.91 -0.02 3.39 16 9 C 0.22 10.30 1.45 -10.88 -0.02 10.29 16 10 O -0.59 -30.58 13.50 -148.98 -2.01 -32.59 16 11 C 0.11 4.73 8.22 86.48 0.71 5.44 16 12 N -0.64 -26.67 3.61 -840.27 -3.03 -29.70 16 13 C 0.52 20.53 8.06 87.66 0.71 21.24 16 14 O -0.60 -28.02 16.71 -3.04 -0.05 -28.07 16 15 C -0.12 -3.50 5.45 29.85 0.16 -3.34 16 16 C -0.10 -2.42 4.50 30.59 0.14 -2.28 16 17 C -0.11 -1.93 5.21 30.59 0.16 -1.77 16 18 C -0.11 -1.85 5.20 30.59 0.16 -1.69 16 19 C -0.05 -0.68 5.71 29.85 0.17 -0.51 16 20 C -0.18 -2.98 5.76 24.59 0.14 -2.84 16 21 C -0.15 -2.37 10.05 21.22 0.21 -2.16 16 22 C -0.14 -2.00 10.18 21.22 0.22 -1.78 16 23 C -0.22 -3.19 11.23 66.72 0.75 -2.45 16 24 S 0.07 1.13 23.33 -56.49 -1.32 -0.19 16 25 C 0.09 3.88 8.00 86.48 0.69 4.57 16 26 H 0.28 12.90 8.31 -92.71 -0.77 12.13 16 27 H 0.39 20.31 6.42 -74.05 -0.48 19.84 16 28 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.10 4.03 8.09 -2.39 -0.02 4.01 16 30 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 33 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 41 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 42 H 0.18 1.74 8.06 -2.91 -0.02 1.71 16 43 H 0.09 3.61 8.09 -2.39 -0.02 3.59 16 44 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -60.66 382.64 1.24 -59.42 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: 0.51 Total: 37.74 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 4.88 Total: -2.35 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -2.79 Total: -74.64 kcal Atomic # 8 Polarization: -58.60 SS G_CDS: -2.06 Total: -60.66 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -1.32 Total: -0.19 kcal Total: -60.66 1.24 -59.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193985728.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.549 kcal (2) G-P(sol) polarization free energy of solvation -60.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds