Wall clock time and date at job start Tue Mar 31 2020 13:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37877 * 119.86264 * 2 1 4 4 C 1.38259 * 120.22892 * 179.70666 * 3 2 1 5 5 C 1.38277 * 119.82714 * 0.60856 * 4 3 2 6 6 C 1.38129 * 120.14929 * 359.66442 * 5 4 3 7 7 C 1.38622 * 120.47301 * 0.02562 * 6 5 4 8 8 N 1.39753 * 111.61858 * 179.97438 * 7 6 5 9 9 C 1.34777 * 124.96788 * 179.97438 * 8 7 6 10 10 O 1.21598 * 120.00050 * 6.56173 * 9 8 7 11 11 C 1.47501 * 119.99965 * 186.55802 * 9 8 7 12 12 C 1.39684 * 120.19960 * 352.47427 * 11 9 8 13 13 C 1.37822 * 119.91770 * 180.02562 * 12 11 9 14 14 C 1.38577 * 120.32811 * 359.97438 * 13 12 11 15 15 C 1.38022 * 120.40269 * 0.02562 * 14 13 12 16 16 C 1.38834 * 120.07409 * 359.67535 * 15 14 13 17 17 O 1.35519 * 120.16313 * 180.31788 * 16 15 14 18 18 C 1.34811 * 117.00389 * 351.35894 * 17 16 15 19 19 H 1.08001 * 119.99257 * 5.32675 * 18 17 16 20 20 C 1.38691 * 120.00135 * 185.33593 * 18 17 16 21 21 N 1.31522 * 120.00408 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99891 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47206 * 89.99470 * 22 20 18 24 24 H 1.48502 * 109.46964 * 209.99677 * 22 20 18 25 25 H 1.48499 * 109.47061 * 329.99393 * 22 20 18 26 26 C 1.46537 * 110.06063 * 0.02562 * 8 7 6 27 27 C 1.51220 * 130.98099 * 180.02562 * 6 5 4 28 28 H 1.08996 * 109.47056 * 240.40392 * 1 2 3 29 29 H 1.09000 * 109.46643 * 120.39819 * 1 2 3 30 30 H 1.09002 * 109.46678 * 0.40334 * 1 2 3 31 31 H 1.08000 * 119.88380 * 0.02562 * 3 2 1 32 32 H 1.07996 * 120.08797 * 180.27028 * 4 3 2 33 33 H 1.08001 * 119.92433 * 179.68584 * 5 4 3 34 34 H 1.08001 * 120.04079 * 359.97438 * 12 11 9 35 35 H 1.08009 * 119.83708 * 179.97438 * 13 12 11 36 36 H 1.07998 * 119.79474 * 180.02562 * 14 13 12 37 37 H 1.07999 * 119.96749 * 179.97438 * 15 14 13 38 38 H 0.96996 * 120.00309 * 180.02562 * 21 20 18 39 39 H 1.09002 * 110.29673 * 241.06083 * 26 8 7 40 40 H 1.09005 * 110.37697 * 118.97486 * 26 8 7 41 41 H 1.09001 * 110.41752 * 298.77627 * 27 6 5 42 42 H 1.09002 * 110.41444 * 61.10758 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1936 1.1957 0.0000 4 6 3.5761 1.2045 0.0061 5 6 4.2716 0.0094 -0.0005 6 6 3.5881 -1.1909 -0.0062 7 6 2.2021 -1.2107 -0.0059 8 7 1.7058 -2.5172 -0.0127 9 6 0.3990 -2.8470 -0.0136 10 8 -0.4466 -1.9808 -0.1285 11 6 -0.0054 -4.2588 0.1248 12 6 0.9569 -5.2710 0.0993 13 6 0.5725 -6.5882 0.2286 14 6 -0.7652 -6.9147 0.3846 15 6 -1.7271 -5.9253 0.4117 16 6 -1.3580 -4.5925 0.2891 17 8 -2.3004 -3.6192 0.3219 18 6 -3.5892 -4.0138 0.2955 19 1 -3.8328 -5.0652 0.3371 20 6 -4.6020 -3.0698 0.2147 21 7 -4.3052 -1.7895 0.1644 22 14 -6.3878 -3.6167 0.1774 23 1 -6.9105 -3.6954 1.5651 24 1 -7.1894 -2.6368 -0.5988 25 1 -6.4830 -4.9527 -0.4639 26 6 2.8140 -3.4758 -0.0175 27 6 4.0895 -2.6176 -0.0133 28 1 -0.3633 -0.5075 0.8935 29 1 -0.3632 -0.5200 -0.8864 30 1 -0.3633 1.0277 -0.0072 31 1 1.6494 2.1286 0.0004 32 1 4.1115 2.1424 0.0105 33 1 5.3516 0.0145 -0.0009 34 1 2.0006 -5.0218 -0.0224 35 1 1.3176 -7.3699 0.2083 36 1 -1.0567 -7.9497 0.4856 37 1 -2.7677 -6.1877 0.5332 38 1 -5.0136 -1.1292 0.1083 39 1 2.7764 -4.0927 -0.9154 40 1 2.7771 -4.1032 0.8731 41 1 4.6793 -2.8089 -0.9098 42 1 4.6815 -2.8170 0.8799 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194198123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:30 Heat of formation + Delta-G solvation = 47.025938 kcal Electronic energy + Delta-G solvation = -27326.446611 eV Core-core repulsion = 23625.274384 eV Total energy + Delta-G solvation = -3701.172227 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.41404 -40.80740 -39.26353 -38.29844 -37.49186 -34.37239 -33.91036 -32.95676 -31.37501 -30.61980 -29.97140 -27.75886 -27.36401 -25.68208 -24.29059 -23.30646 -22.53798 -22.14718 -20.32931 -19.89639 -18.84574 -18.43218 -17.58512 -17.34854 -16.63425 -16.29651 -16.15241 -15.99598 -15.72386 -15.42786 -15.29350 -15.13360 -14.88901 -14.37972 -14.16467 -13.94063 -13.85908 -13.61474 -13.43700 -13.07805 -13.04637 -12.93593 -12.72689 -12.55822 -12.48401 -12.25205 -12.18427 -11.77398 -11.74211 -11.21530 -11.08523 -10.85306 -9.93187 -9.81103 -9.48481 -9.08427 -8.54294 -8.47156 -6.17999 -0.06283 0.43825 0.51886 0.69631 1.29539 1.40742 1.48382 1.85990 1.99095 2.12862 2.80193 2.91011 3.16869 3.38310 3.43850 3.59604 3.85255 4.04096 4.09457 4.13100 4.18291 4.23524 4.34181 4.45509 4.48584 4.52892 4.57536 4.62947 4.83056 4.92066 4.93712 4.96347 5.04140 5.04608 5.09376 5.16206 5.30113 5.48162 5.49321 5.55661 5.56786 5.66897 5.68933 5.74606 5.93148 6.14363 6.16278 6.43516 6.91964 7.36177 7.76147 8.72639 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.004601 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.247274 B = 6083.791099 C = 8087.727659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.130 4.130 3 C -0.108 4.108 4 C -0.137 4.137 5 C -0.080 4.080 6 C -0.139 4.139 7 C 0.115 3.885 8 N -0.562 5.562 9 C 0.533 3.467 10 O -0.514 6.514 11 C -0.243 4.243 12 C -0.072 4.072 13 C -0.199 4.199 14 C -0.040 4.040 15 C -0.258 4.258 16 C 0.151 3.849 17 O -0.189 6.189 18 C -0.427 4.427 19 H 0.105 0.895 20 C -0.020 4.020 21 N -0.901 5.901 22 Si 1.020 2.980 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.249 1.249 26 C 0.079 3.921 27 C -0.075 4.075 28 H 0.034 0.966 29 H 0.063 0.937 30 H 0.029 0.971 31 H 0.131 0.869 32 H 0.159 0.841 33 H 0.165 0.835 34 H 0.192 0.808 35 H 0.168 0.832 36 H 0.154 0.846 37 H 0.122 0.878 38 H 0.270 0.730 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.120 0.880 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.455 -5.000 -0.344 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.133 4.133 3 C -0.126 4.126 4 C -0.156 4.156 5 C -0.098 4.098 6 C -0.142 4.142 7 C 0.021 3.979 8 N -0.286 5.286 9 C 0.328 3.672 10 O -0.391 6.391 11 C -0.248 4.248 12 C -0.089 4.089 13 C -0.218 4.218 14 C -0.059 4.059 15 C -0.278 4.278 16 C 0.096 3.904 17 O -0.092 6.092 18 C -0.503 4.503 19 H 0.122 0.878 20 C -0.219 4.219 21 N -0.537 5.537 22 Si 0.839 3.161 23 H -0.186 1.186 24 H -0.198 1.198 25 H -0.172 1.172 26 C -0.041 4.041 27 C -0.111 4.111 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.149 0.851 32 H 0.176 0.824 33 H 0.183 0.817 34 H 0.208 0.792 35 H 0.185 0.815 36 H 0.172 0.828 37 H 0.140 0.860 38 H 0.079 0.921 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.138 0.862 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 19.758 -4.208 -0.411 20.205 hybrid contribution -2.088 0.237 0.093 2.104 sum 17.670 -3.971 -0.317 18.113 Atomic orbital electron populations 1.20931 0.91615 0.96921 1.02561 1.19797 0.95742 0.92701 1.05075 1.20996 0.95674 0.95792 1.00170 1.21359 0.92773 0.99604 1.01868 1.20772 1.01260 0.89448 0.98358 1.20468 0.90557 0.97683 1.05504 1.18739 0.94149 0.84836 1.00220 1.45800 1.05837 1.05882 1.71109 1.18850 0.82424 0.89538 0.76369 1.91388 1.52695 1.47427 1.47640 1.19224 0.92007 0.93201 1.20360 1.22835 1.00845 0.91971 0.93255 1.21273 0.96193 0.96356 1.07942 1.21492 0.92953 0.99094 0.92317 1.21289 1.01469 0.91910 1.13083 1.20031 0.89495 0.89466 0.91401 1.84135 1.15192 1.31749 1.78107 1.21988 0.79553 0.95041 1.53689 0.87780 1.26708 1.05153 0.94583 0.95482 1.70307 1.35129 1.01760 1.46507 0.84587 0.73502 0.78809 0.79233 1.18632 1.19770 1.17228 1.22990 0.84238 0.92529 1.04321 1.21285 0.96040 0.87362 1.06432 0.94761 0.91834 0.95275 0.85122 0.82375 0.81749 0.79188 0.81480 0.82838 0.85989 0.92088 0.87488 0.87520 0.86211 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -3.13 7.82 71.24 0.56 -2.57 16 2 C -0.13 -5.11 5.91 -19.62 -0.12 -5.23 16 3 C -0.11 -3.26 9.64 22.19 0.21 -3.05 16 4 C -0.14 -3.03 10.06 22.28 0.22 -2.81 16 5 C -0.08 -1.60 10.04 22.25 0.22 -1.37 16 6 C -0.14 -3.41 6.23 -19.63 -0.12 -3.54 16 7 C 0.12 4.12 6.61 38.30 0.25 4.37 16 8 N -0.56 -20.47 3.13 -653.36 -2.04 -22.52 16 9 C 0.53 25.45 7.73 86.69 0.67 26.12 16 10 O -0.51 -30.00 8.24 16.73 0.14 -29.86 16 11 C -0.24 -10.88 5.89 -19.99 -0.12 -11.00 16 12 C -0.07 -2.22 8.56 22.52 0.19 -2.02 16 13 C -0.20 -5.30 10.02 22.25 0.22 -5.08 16 14 C -0.04 -1.27 10.03 22.30 0.22 -1.04 16 15 C -0.26 -11.18 9.15 22.36 0.20 -10.97 16 16 C 0.15 7.90 6.64 22.91 0.15 8.05 16 17 O -0.19 -12.10 7.87 0.74 0.01 -12.09 16 18 C -0.43 -26.02 9.49 67.93 0.64 -25.37 16 19 H 0.10 5.72 5.24 -2.91 -0.02 5.70 16 20 C -0.02 -1.18 5.49 84.85 0.47 -0.71 16 21 N -0.90 -59.05 13.67 21.62 0.30 -58.75 16 22 Si 1.02 44.72 29.55 68.60 2.03 46.74 16 23 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 25 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 26 C 0.08 1.71 5.04 86.62 0.44 2.15 16 27 C -0.07 -1.16 6.94 30.26 0.21 -0.95 16 28 H 0.03 1.92 6.54 -2.91 -0.02 1.90 16 29 H 0.06 3.56 5.87 -57.14 -0.34 3.22 16 30 H 0.03 1.29 7.86 -2.39 -0.02 1.27 16 31 H 0.13 3.57 7.93 -2.91 -0.02 3.55 16 32 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 34 H 0.19 4.05 2.73 -11.15 -0.03 4.02 16 35 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 37 H 0.12 5.36 5.69 -2.91 -0.02 5.35 16 38 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 39 H 0.11 1.89 6.86 -2.39 -0.02 1.87 16 40 H 0.11 1.94 6.60 -2.38 -0.02 1.92 16 41 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -90.52 337.20 5.69 -84.83 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.73 Total: 26.68 kcal Atomic # 6 Polarization: -39.57 SS G_CDS: 4.54 Total: -35.03 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -1.75 Total: -81.27 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: 0.14 Total: -41.96 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -90.52 5.69 -84.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194198123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.853 kcal (2) G-P(sol) polarization free energy of solvation -90.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds