Wall clock time and date at job start Tue Mar 31 2020 13:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.41759 * 126.56823 * 2 1 4 4 C 1.41016 * 133.20058 * 359.97438 * 3 2 1 5 5 C 1.35344 * 120.76676 * 180.29979 * 4 3 2 6 6 C 1.41122 * 120.34766 * 0.02562 * 5 4 3 7 7 C 1.40358 * 120.84455 * 179.97438 * 6 5 4 8 8 C 1.36256 * 119.76477 * 180.02562 * 7 6 5 9 9 C 1.39196 * 120.93525 * 359.97438 * 8 7 6 10 10 C 1.36284 * 120.86095 * 0.02562 * 9 8 7 11 11 C 1.40290 * 119.72076 * 0.02562 * 10 9 8 12 12 C 1.39878 * 106.33513 * 180.23635 * 3 2 1 13 13 O 1.34554 * 107.73375 * 359.76872 * 12 3 2 14 14 C 1.35000 * 109.81689 * 0.02562 * 13 12 3 15 15 C 1.46886 * 125.37866 * 179.97438 * 14 13 12 16 16 O 1.21661 * 120.00422 * 179.74744 * 15 14 13 17 17 N 1.34778 * 119.99715 * 0.02904 * 15 14 13 18 18 C 1.46506 * 120.00294 * 179.97438 * 17 15 14 19 19 H 1.09004 * 109.46845 * 34.99616 * 18 17 15 20 20 C 1.53003 * 109.47068 * 274.99886 * 18 17 15 21 21 C 1.50694 * 109.47397 * 154.99457 * 18 17 15 22 22 H 1.08007 * 119.99770 * 35.00491 * 21 18 17 23 23 C 1.37871 * 120.00110 * 215.00419 * 21 18 17 24 24 N 1.31525 * 120.00111 * 184.91820 * 23 21 18 25 25 Si 1.86798 * 120.00212 * 4.91757 * 23 21 18 26 26 H 1.48498 * 109.47558 * 84.83258 * 25 23 21 27 27 H 1.48503 * 109.47298 * 204.83741 * 25 23 21 28 28 H 1.48503 * 109.47005 * 324.83012 * 25 23 21 29 29 H 1.09008 * 109.46992 * 270.18528 * 1 2 3 30 30 H 1.08997 * 109.47309 * 30.18295 * 1 2 3 31 31 H 1.09003 * 109.47625 * 150.18513 * 1 2 3 32 32 H 1.08004 * 119.62089 * 0.31579 * 4 3 2 33 33 H 1.08001 * 119.83045 * 179.97438 * 5 4 3 34 34 H 1.07994 * 120.11906 * 0.02562 * 7 6 5 35 35 H 1.08004 * 119.53404 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.57169 * 180.02562 * 9 8 7 37 37 H 1.07994 * 120.14168 * 180.02562 * 10 9 8 38 38 H 0.97002 * 120.00162 * 359.97438 * 17 15 14 39 39 H 1.08993 * 109.46866 * 175.03066 * 20 18 17 40 40 H 1.08997 * 109.46740 * 295.03344 * 20 18 17 41 41 H 1.09000 * 109.46783 * 55.03476 * 20 18 17 42 42 H 0.97000 * 120.00113 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3515 1.1385 0.0000 4 6 2.1010 2.5263 -0.0005 5 6 3.1225 3.4142 -0.0064 6 6 4.4596 2.9628 -0.0128 7 6 5.5268 3.8743 -0.0196 8 6 6.8094 3.4142 -0.0262 9 6 7.0797 2.0488 -0.0259 10 6 6.0680 1.1358 -0.0194 11 6 4.7354 1.5744 -0.0136 12 6 3.6640 0.6548 -0.0055 13 8 3.6053 -0.6895 -0.0035 14 6 2.3165 -1.0913 0.0026 15 6 1.8611 -2.4878 0.0059 16 8 0.6709 -2.7396 0.0160 17 7 2.7620 -3.4903 0.0034 18 6 2.3079 -4.8832 0.0073 19 1 1.3924 -4.9685 -0.5782 20 6 2.0364 -5.3272 1.4461 21 6 3.3738 -5.7608 -0.5966 22 1 4.4170 -5.5300 -0.4382 23 6 3.0174 -6.8582 -1.3512 24 7 3.9437 -7.6786 -1.7972 25 14 1.2190 -7.1801 -1.7403 26 1 0.8249 -6.4003 -2.9410 27 1 1.0209 -8.6282 -2.0034 28 1 0.3813 -6.7679 -0.5854 29 1 -0.3633 0.0033 1.0277 30 1 -0.3634 0.8883 -0.5167 31 1 -0.3634 -0.8916 -0.5109 32 1 1.0823 2.8848 0.0043 33 1 2.9133 4.4737 -0.0071 34 1 5.3322 4.9366 -0.0195 35 1 7.6278 4.1190 -0.0318 36 1 8.1047 1.7084 -0.0308 37 1 6.2910 0.0791 -0.0188 38 1 3.7110 -3.2896 -0.0009 39 1 1.6153 -6.3325 1.4427 40 1 2.9699 -5.3260 2.0088 41 1 1.3307 -4.6392 1.9115 42 1 3.6930 -8.4505 -2.3284 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194743707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:56 Heat of formation + Delta-G solvation = 0.050028 kcal Electronic energy + Delta-G solvation = -26172.044971 eV Core-core repulsion = 22468.835715 eV Total energy + Delta-G solvation = -3703.209256 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.81659 -39.89580 -38.86147 -36.33385 -35.15193 -33.57748 -32.57179 -32.30919 -30.23176 -29.97586 -28.85273 -27.34324 -25.37013 -24.18945 -23.64593 -22.41268 -21.63980 -19.96376 -19.73679 -18.79850 -17.87640 -17.07876 -16.49263 -16.44331 -16.10808 -15.60277 -15.39931 -14.75889 -14.25659 -14.11355 -14.06485 -13.52805 -13.41472 -13.35096 -13.12196 -12.99250 -12.66070 -12.56820 -12.45522 -12.41862 -11.93021 -11.56944 -11.44463 -11.41420 -11.15122 -11.04301 -10.86286 -10.64156 -9.95333 -9.93287 -9.65064 -9.53858 -9.26851 -8.75417 -8.37781 -8.12915 -7.94316 -6.27287 -4.31903 0.35441 0.46226 1.63111 1.80426 2.47928 2.85047 3.23358 3.31565 3.37649 3.56865 3.73821 3.84029 4.28693 4.33995 4.47524 4.61389 4.70926 4.72557 4.81881 5.02462 5.07612 5.12956 5.15119 5.28006 5.37700 5.59686 5.68768 5.75670 5.78171 5.83339 5.98942 6.00429 6.17731 6.26259 6.27399 6.31521 6.38712 6.43054 6.48217 6.60825 6.64946 6.83034 6.91819 7.13441 7.28208 7.42684 8.03185 8.44536 8.66738 8.76478 9.33357 10.84259 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017340 B = 0.003251 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.398324 B = 8610.024649 C = 9799.924696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.090 4.090 3 C -0.139 4.139 4 C -0.055 4.055 5 C -0.132 4.132 6 C -0.025 4.025 7 C -0.110 4.110 8 C -0.109 4.109 9 C -0.121 4.121 10 C -0.094 4.094 11 C -0.027 4.027 12 C 0.068 3.932 13 O -0.158 6.158 14 C -0.031 4.031 15 C 0.584 3.416 16 O -0.530 6.530 17 N -0.686 5.686 18 C 0.230 3.770 19 H 0.053 0.947 20 C -0.148 4.148 21 C -0.533 4.533 22 H 0.080 0.920 23 C 0.082 3.918 24 N -0.886 5.886 25 Si 0.874 3.126 26 H -0.272 1.272 27 H -0.285 1.285 28 H -0.259 1.259 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.399 0.601 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.030 0.970 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 23.847 4.108 24.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.140 4.140 4 C -0.073 4.073 5 C -0.150 4.150 6 C -0.026 4.026 7 C -0.128 4.128 8 C -0.127 4.127 9 C -0.139 4.139 10 C -0.112 4.112 11 C -0.027 4.027 12 C 0.017 3.983 13 O -0.056 6.056 14 C -0.082 4.082 15 C 0.368 3.632 16 O -0.411 6.411 17 N -0.333 5.333 18 C 0.128 3.872 19 H 0.071 0.929 20 C -0.207 4.207 21 C -0.570 4.570 22 H 0.098 0.902 23 C -0.123 4.123 24 N -0.522 5.522 25 Si 0.700 3.300 26 H -0.197 1.197 27 H -0.211 1.211 28 H -0.184 1.184 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.233 0.767 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.049 0.951 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.850 23.207 4.001 23.565 hybrid contribution -0.295 -0.145 -0.314 0.455 sum 0.555 23.062 3.687 23.362 Atomic orbital electron populations 1.20418 0.87679 1.03733 1.02921 1.20311 0.97470 0.89723 1.01768 1.18747 0.92233 0.94534 1.08501 1.20225 0.99738 0.89994 0.97359 1.20757 0.90946 0.99763 1.03494 1.17831 0.94264 0.90845 0.99623 1.20951 0.91924 0.99040 1.00915 1.20920 0.96885 0.95754 0.99101 1.20874 0.99462 0.93048 1.00536 1.21109 0.91241 1.00666 0.98163 1.16869 0.91028 0.90389 1.04460 1.19661 0.94930 0.81225 1.02468 1.84097 1.28084 1.20180 1.73217 1.22391 0.80159 0.95881 1.09788 1.16764 0.86496 0.81462 0.78511 1.90789 1.15356 1.82262 1.52646 1.46717 1.09297 1.07365 1.69918 1.19254 0.96986 0.76839 0.94090 0.92874 1.22225 0.99873 1.00187 0.98428 1.20986 0.93709 1.09606 1.32748 0.90182 1.24941 0.97658 0.95397 0.94265 1.69881 1.33269 1.14090 1.34970 0.86899 0.85515 0.77533 0.80045 1.19744 1.21062 1.18357 0.90774 0.91723 0.88877 0.85280 0.84893 0.85121 0.85716 0.85526 0.84919 0.76666 0.92592 0.93231 0.95057 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 9.78 36.00 0.35 -0.88 16 2 C -0.09 -1.41 6.21 -104.13 -0.65 -2.05 16 3 C -0.14 -1.99 6.14 -106.89 -0.66 -2.64 16 4 C -0.06 -0.61 10.00 -39.56 -0.40 -1.01 16 5 C -0.13 -1.29 9.71 -39.52 -0.38 -1.67 16 6 C -0.03 -0.28 5.75 -106.74 -0.61 -0.89 16 7 C -0.11 -0.95 9.75 -39.50 -0.38 -1.33 16 8 C -0.11 -0.89 9.95 -39.94 -0.40 -1.28 16 9 C -0.12 -1.13 9.95 -39.93 -0.40 -1.52 16 10 C -0.09 -1.09 9.76 -39.51 -0.39 -1.48 16 11 C -0.03 -0.36 5.75 -106.74 -0.61 -0.97 16 12 C 0.07 1.03 7.15 -37.85 -0.27 0.76 16 13 O -0.16 -2.64 10.36 3.07 0.03 -2.61 16 14 C -0.03 -0.55 7.08 -36.93 -0.26 -0.81 16 15 C 0.58 11.84 7.76 -12.76 -0.10 11.74 16 16 O -0.53 -11.73 14.27 5.22 0.07 -11.66 16 17 N -0.69 -14.42 5.07 -56.18 -0.28 -14.70 16 18 C 0.23 5.47 2.22 -69.08 -0.15 5.31 16 19 H 0.05 1.35 4.73 -51.93 -0.25 1.11 16 20 C -0.15 -3.23 9.47 37.16 0.35 -2.87 16 21 C -0.53 -14.30 9.05 -34.45 -0.31 -14.61 16 22 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 23 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 24 N -0.89 -25.95 13.96 55.43 0.77 -25.18 16 25 Si 0.87 21.29 26.99 -169.99 -4.59 16.70 16 26 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.26 -6.16 6.82 56.52 0.39 -5.78 16 29 H 0.07 0.93 8.14 -51.92 -0.42 0.50 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.44 6.37 -51.93 -0.33 1.11 16 32 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 35 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.40 7.74 8.32 -40.82 -0.34 7.41 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -31.24 357.45 -9.11 -40.35 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.14 Total: 5.73 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -5.36 Total: -14.02 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.49 Total: -39.88 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.11 Total: -14.26 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.59 Total: 16.70 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.24 -9.11 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194743707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.402 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds