Wall clock time and date at job start Tue Mar 31 2020 13:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.41759 * 126.56823 * 2 1 4 4 C 1.41016 * 133.20058 * 359.97438 * 3 2 1 5 5 C 1.35344 * 120.76676 * 180.29979 * 4 3 2 6 6 C 1.41122 * 120.34766 * 0.02562 * 5 4 3 7 7 C 1.40358 * 120.84455 * 179.97438 * 6 5 4 8 8 C 1.36256 * 119.76477 * 180.02562 * 7 6 5 9 9 C 1.39196 * 120.93525 * 359.97438 * 8 7 6 10 10 C 1.36284 * 120.86095 * 0.02562 * 9 8 7 11 11 C 1.40290 * 119.72076 * 0.02562 * 10 9 8 12 12 C 1.39878 * 106.33513 * 180.23635 * 3 2 1 13 13 O 1.34554 * 107.73375 * 359.76872 * 12 3 2 14 14 C 1.35000 * 109.81689 * 0.02562 * 13 12 3 15 15 C 1.46886 * 125.37866 * 179.97438 * 14 13 12 16 16 O 1.21661 * 120.00422 * 179.74744 * 15 14 13 17 17 N 1.34778 * 119.99715 * 0.02904 * 15 14 13 18 18 C 1.46506 * 120.00294 * 179.97438 * 17 15 14 19 19 H 1.09004 * 109.46845 * 34.99616 * 18 17 15 20 20 C 1.53003 * 109.47068 * 274.99886 * 18 17 15 21 21 C 1.50694 * 109.47397 * 154.99457 * 18 17 15 22 22 H 1.08007 * 119.99770 * 35.00491 * 21 18 17 23 23 C 1.37871 * 120.00110 * 215.00419 * 21 18 17 24 24 N 1.31525 * 120.00111 * 184.91820 * 23 21 18 25 25 Si 1.86798 * 120.00212 * 4.91757 * 23 21 18 26 26 H 1.48498 * 109.47558 * 84.83258 * 25 23 21 27 27 H 1.48503 * 109.47298 * 204.83741 * 25 23 21 28 28 H 1.48503 * 109.47005 * 324.83012 * 25 23 21 29 29 H 1.09008 * 109.46992 * 270.18528 * 1 2 3 30 30 H 1.08997 * 109.47309 * 30.18295 * 1 2 3 31 31 H 1.09003 * 109.47625 * 150.18513 * 1 2 3 32 32 H 1.08004 * 119.62089 * 0.31579 * 4 3 2 33 33 H 1.08001 * 119.83045 * 179.97438 * 5 4 3 34 34 H 1.07994 * 120.11906 * 0.02562 * 7 6 5 35 35 H 1.08004 * 119.53404 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.57169 * 180.02562 * 9 8 7 37 37 H 1.07994 * 120.14168 * 180.02562 * 10 9 8 38 38 H 0.97002 * 120.00162 * 359.97438 * 17 15 14 39 39 H 1.08993 * 109.46866 * 175.03066 * 20 18 17 40 40 H 1.08997 * 109.46740 * 295.03344 * 20 18 17 41 41 H 1.09000 * 109.46783 * 55.03476 * 20 18 17 42 42 H 0.97000 * 120.00113 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3515 1.1385 0.0000 4 6 2.1010 2.5263 -0.0005 5 6 3.1225 3.4142 -0.0064 6 6 4.4596 2.9628 -0.0128 7 6 5.5268 3.8743 -0.0196 8 6 6.8094 3.4142 -0.0262 9 6 7.0797 2.0488 -0.0259 10 6 6.0680 1.1358 -0.0194 11 6 4.7354 1.5744 -0.0136 12 6 3.6640 0.6548 -0.0055 13 8 3.6053 -0.6895 -0.0035 14 6 2.3165 -1.0913 0.0026 15 6 1.8611 -2.4878 0.0059 16 8 0.6709 -2.7396 0.0160 17 7 2.7620 -3.4903 0.0034 18 6 2.3079 -4.8832 0.0073 19 1 1.3924 -4.9685 -0.5782 20 6 2.0364 -5.3272 1.4461 21 6 3.3738 -5.7608 -0.5966 22 1 4.4170 -5.5300 -0.4382 23 6 3.0174 -6.8582 -1.3512 24 7 3.9437 -7.6786 -1.7972 25 14 1.2190 -7.1801 -1.7403 26 1 0.8249 -6.4003 -2.9410 27 1 1.0209 -8.6282 -2.0034 28 1 0.3813 -6.7679 -0.5854 29 1 -0.3633 0.0033 1.0277 30 1 -0.3634 0.8883 -0.5167 31 1 -0.3634 -0.8916 -0.5109 32 1 1.0823 2.8848 0.0043 33 1 2.9133 4.4737 -0.0071 34 1 5.3322 4.9366 -0.0195 35 1 7.6278 4.1190 -0.0318 36 1 8.1047 1.7084 -0.0308 37 1 6.2910 0.0791 -0.0188 38 1 3.7110 -3.2896 -0.0009 39 1 1.6153 -6.3325 1.4427 40 1 2.9699 -5.3260 2.0088 41 1 1.3307 -4.6392 1.9115 42 1 3.6930 -8.4505 -2.3284 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194743707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:55 Heat of formation + Delta-G solvation = -17.991031 kcal Electronic energy + Delta-G solvation = -26172.827290 eV Core-core repulsion = 22468.835715 eV Total energy + Delta-G solvation = -3703.991575 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.93179 -40.88816 -40.32654 -37.27137 -36.87746 -34.73403 -34.43269 -33.29461 -31.92664 -30.84235 -29.83317 -28.56027 -27.39166 -25.32930 -24.48169 -23.31804 -23.05966 -21.64643 -20.91708 -20.17912 -18.99254 -18.58856 -17.73016 -17.63844 -17.42544 -16.83046 -16.44220 -16.25047 -15.76249 -15.53508 -14.98328 -14.82722 -14.58986 -14.44624 -14.34504 -14.25545 -14.13029 -13.97404 -13.67772 -13.36464 -13.25564 -13.07335 -12.97825 -12.82052 -12.49142 -12.28507 -12.15691 -11.89983 -11.85571 -11.31334 -11.17037 -10.87935 -10.82347 -10.64533 -10.03337 -9.17829 -8.86191 -8.43145 -6.51397 -0.66073 -0.35130 0.50739 0.95746 1.28128 1.32406 1.33276 1.43067 1.92130 2.13448 2.22019 2.25018 2.97122 3.02401 3.42120 3.45142 3.62096 3.84603 3.92401 3.97305 4.07854 4.26002 4.34233 4.36999 4.40110 4.47482 4.66834 4.70716 4.74553 4.74882 4.85925 4.89676 4.97412 4.98906 5.02828 5.19081 5.25690 5.31726 5.37692 5.39513 5.50122 5.52375 5.54444 5.58002 5.85166 5.98111 6.06227 6.51301 6.66713 7.03840 7.19250 8.71932 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017340 B = 0.003251 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.398324 B = 8610.024649 C = 9799.924696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.075 4.075 3 C -0.151 4.151 4 C -0.070 4.070 5 C -0.113 4.113 6 C -0.038 4.038 7 C -0.103 4.103 8 C -0.105 4.105 9 C -0.115 4.115 10 C -0.124 4.124 11 C -0.056 4.056 12 C 0.047 3.953 13 O -0.176 6.176 14 C -0.075 4.075 15 C 0.588 3.412 16 O -0.554 6.554 17 N -0.693 5.693 18 C 0.235 3.765 19 H 0.040 0.960 20 C -0.142 4.142 21 C -0.533 4.533 22 H 0.052 0.948 23 C 0.034 3.966 24 N -0.928 5.928 25 Si 0.929 3.071 26 H -0.273 1.273 27 H -0.274 1.274 28 H -0.250 1.250 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.159 0.841 33 H 0.176 0.824 34 H 0.170 0.830 35 H 0.161 0.839 36 H 0.147 0.853 37 H 0.119 0.881 38 H 0.404 0.596 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.041 0.959 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.968 28.260 4.495 28.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 C -0.152 4.152 4 C -0.088 4.088 5 C -0.131 4.131 6 C -0.038 4.038 7 C -0.121 4.121 8 C -0.123 4.123 9 C -0.133 4.133 10 C -0.142 4.142 11 C -0.056 4.056 12 C -0.003 4.003 13 O -0.075 6.075 14 C -0.125 4.125 15 C 0.374 3.626 16 O -0.435 6.435 17 N -0.340 5.340 18 C 0.132 3.868 19 H 0.058 0.942 20 C -0.200 4.200 21 C -0.571 4.571 22 H 0.070 0.930 23 C -0.167 4.167 24 N -0.566 5.566 25 Si 0.753 3.247 26 H -0.199 1.199 27 H -0.199 1.199 28 H -0.173 1.173 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.176 0.824 33 H 0.194 0.806 34 H 0.187 0.813 35 H 0.179 0.821 36 H 0.165 0.835 37 H 0.137 0.863 38 H 0.238 0.762 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.423 27.639 4.400 27.991 hybrid contribution 0.071 -1.228 -0.415 1.298 sum 0.494 26.412 3.985 26.715 Atomic orbital electron populations 1.20482 0.86213 1.04157 1.03729 1.20705 0.98464 0.89671 0.98947 1.19019 0.91248 0.95851 1.09070 1.20557 1.01815 0.88347 0.98096 1.21256 0.89788 1.01617 1.00420 1.18266 0.96037 0.90115 0.99370 1.21427 0.91196 1.00480 0.98950 1.21382 0.98105 0.95541 0.97238 1.21225 0.99809 0.93635 0.98602 1.21162 0.91802 1.00786 1.00455 1.17221 0.91015 0.91337 1.06029 1.20239 0.96554 0.80622 1.02868 1.84022 1.27669 1.21610 1.74210 1.21846 0.81272 0.94913 1.14455 1.16929 0.85964 0.82344 0.77363 1.90753 1.16038 1.83147 1.53608 1.46472 1.09787 1.06753 1.70964 1.19039 0.95177 0.77748 0.94848 0.94240 1.22120 1.00487 1.00344 0.97098 1.21146 0.93294 1.10096 1.32607 0.92972 1.25659 1.01499 0.95282 0.94299 1.69984 1.35276 1.14987 1.36365 0.86014 0.80920 0.77826 0.79949 1.19859 1.19905 1.17338 0.89626 0.88455 0.91154 0.82372 0.80627 0.81262 0.82129 0.83509 0.86329 0.76160 0.92521 0.92631 0.93984 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.34 9.78 71.23 0.70 -1.65 16 2 C -0.07 -2.36 6.21 -19.54 -0.12 -2.49 16 3 C -0.15 -4.23 6.14 -21.33 -0.13 -4.36 16 4 C -0.07 -1.35 10.00 22.28 0.22 -1.13 16 5 C -0.11 -1.75 9.71 22.31 0.22 -1.53 16 6 C -0.04 -0.72 5.75 -21.24 -0.12 -0.84 16 7 C -0.10 -1.29 9.75 22.32 0.22 -1.08 16 8 C -0.11 -1.28 9.95 22.04 0.22 -1.06 16 9 C -0.11 -1.91 9.95 22.04 0.22 -1.69 16 10 C -0.12 -2.93 9.76 22.31 0.22 -2.71 16 11 C -0.06 -1.45 5.75 -21.24 -0.12 -1.57 16 12 C 0.05 1.48 7.15 23.39 0.17 1.65 16 13 O -0.18 -6.32 10.36 -11.93 -0.12 -6.45 16 14 C -0.07 -2.78 7.08 23.99 0.17 -2.61 16 15 C 0.59 24.97 7.76 86.51 0.67 25.64 16 16 O -0.55 -25.27 14.27 -4.23 -0.06 -25.33 16 17 N -0.69 -30.64 5.07 -449.87 -2.28 -32.92 16 18 C 0.23 11.49 2.22 44.24 0.10 11.59 16 19 H 0.04 2.05 4.73 -2.38 -0.01 2.04 16 20 C -0.14 -6.23 9.47 71.98 0.68 -5.55 16 21 C -0.53 -29.80 9.05 25.60 0.23 -29.57 16 22 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 23 C 0.03 1.91 5.47 84.65 0.46 2.38 16 24 N -0.93 -56.03 13.96 21.45 0.30 -55.73 16 25 Si 0.93 44.59 26.99 68.60 1.85 46.44 16 26 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 27 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 28 H -0.25 -11.51 6.82 99.48 0.68 -10.83 16 29 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 2.19 6.37 -2.39 -0.02 2.18 16 32 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 34 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 35 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 36 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.12 2.96 8.06 -2.91 -0.02 2.94 16 38 H 0.40 16.90 8.32 -92.71 -0.77 16.13 16 39 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -71.75 357.45 3.95 -67.80 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.26 Total: 22.75 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 4.00 Total: -16.57 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -1.98 Total: -88.65 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.18 Total: -31.78 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.85 Total: 46.44 kcal Total: -71.75 3.95 -67.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194743707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.812 kcal (2) G-P(sol) polarization free energy of solvation -71.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds