Wall clock time and date at job start Tue Mar 31 2020 13:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38272 * 119.92775 * 2 1 4 4 C 1.38253 * 119.83379 * 180.02562 * 3 2 1 5 5 C 1.37881 * 120.22520 * 359.97438 * 4 3 2 6 6 C 1.39612 * 120.27971 * 359.97438 * 5 4 3 7 7 C 1.38135 * 119.92100 * 180.02562 * 2 1 3 8 8 C 1.51215 * 130.98485 * 0.02562 * 7 2 1 9 9 C 1.53746 * 104.57026 * 179.74871 * 8 7 2 10 10 N 1.39753 * 129.33568 * 179.97438 * 6 5 4 11 11 C 1.34776 * 124.97632 * 0.02562 * 10 6 5 12 12 O 1.21602 * 119.99357 * 354.95980 * 11 10 6 13 13 C 1.47501 * 120.00270 * 174.95719 * 11 10 6 14 14 C 1.39677 * 120.19815 * 314.29945 * 13 11 10 15 15 C 1.37823 * 119.91803 * 180.02562 * 14 13 11 16 16 C 1.38580 * 120.32554 * 0.02562 * 15 14 13 17 17 C 1.38030 * 120.40097 * 359.97438 * 16 15 14 18 18 C 1.38831 * 120.07484 * 0.02562 * 17 16 15 19 19 O 1.35520 * 120.15869 * 180.02562 * 18 17 16 20 20 C 1.34809 * 117.00219 * 354.71973 * 19 18 17 21 21 H 1.07994 * 120.00367 * 5.09688 * 20 19 18 22 22 C 1.38704 * 119.99880 * 185.09204 * 20 19 18 23 23 N 1.31516 * 119.99860 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00072 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.46934 * 89.99607 * 24 22 20 26 26 H 1.48495 * 109.47172 * 209.99770 * 24 22 20 27 27 H 1.48504 * 109.47199 * 330.00264 * 24 22 20 28 28 H 1.08996 * 109.47474 * 90.00362 * 1 2 3 29 29 H 1.09002 * 109.47142 * 210.00882 * 1 2 3 30 30 H 1.09007 * 109.47076 * 330.00593 * 1 2 3 31 31 H 1.08003 * 120.07909 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.89005 * 180.02562 * 4 3 2 33 33 H 1.08001 * 119.86270 * 179.97438 * 5 4 3 34 34 H 1.09001 * 110.41774 * 298.73813 * 8 7 2 35 35 H 1.08998 * 110.41335 * 61.06653 * 8 7 2 36 36 H 1.09001 * 110.39923 * 241.34530 * 9 8 7 37 37 H 1.09004 * 110.19253 * 119.20934 * 9 8 7 38 38 H 1.08006 * 120.04128 * 0.04906 * 14 13 11 39 39 H 1.08000 * 119.84020 * 180.27918 * 15 14 13 40 40 H 1.07993 * 119.80046 * 179.97438 * 16 15 14 41 41 H 1.07996 * 119.96378 * 180.02562 * 17 16 15 42 42 H 0.97001 * 119.99650 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1983 0.0000 4 6 3.5794 1.1961 -0.0005 5 6 4.2715 0.0036 -0.0005 6 6 3.5821 -1.2105 0.0005 7 6 2.1960 -1.1972 -0.0005 8 6 1.7014 -2.6262 -0.0017 9 6 2.9810 -3.4784 -0.0083 10 7 4.0847 -2.5145 0.0003 11 6 5.3930 -2.8383 -0.0007 12 8 6.2350 -1.9660 -0.0939 13 6 5.8033 -4.2507 0.1114 14 6 5.2080 -5.0818 1.0631 15 6 5.5962 -6.4005 1.1631 16 6 6.5758 -6.9071 0.3239 17 6 7.1729 -6.0976 -0.6213 18 6 6.7946 -4.7668 -0.7365 19 8 7.3793 -3.9706 -1.6643 20 6 8.3979 -4.5003 -2.3709 21 1 8.6596 -5.5403 -2.2443 22 6 9.1096 -3.7094 -3.2608 23 7 10.1030 -4.2263 -3.9505 24 14 8.6573 -1.9103 -3.4795 25 1 9.4284 -1.0853 -2.5151 26 1 8.9800 -1.4837 -4.8647 27 1 7.2039 -1.7317 -3.2323 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5140 30 1 -0.3633 0.8901 0.5138 31 1 1.6569 2.1337 -0.0004 32 1 4.1191 2.1315 -0.0001 33 1 5.3515 0.0086 -0.0014 34 1 1.1125 -2.8255 0.8937 35 1 1.1103 -2.8232 -0.8961 36 1 3.0222 -4.0949 -0.9063 37 1 3.0207 -4.1044 0.8832 38 1 4.4442 -4.6918 1.7195 39 1 5.1319 -7.0432 1.8964 40 1 6.8738 -7.9415 0.4099 41 1 7.9352 -6.4999 -1.2719 42 1 10.6010 -3.6731 -4.5725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195246801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:04 Heat of formation + Delta-G solvation = 2.044675 kcal Electronic energy + Delta-G solvation = -26890.486553 eV Core-core repulsion = 23187.363792 eV Total energy + Delta-G solvation = -3703.122761 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.08442 -39.50773 -38.10243 -36.65867 -36.26219 -33.13248 -32.53315 -31.52161 -30.17669 -29.33149 -29.11208 -26.58442 -25.45528 -24.27062 -22.91606 -22.13765 -21.23054 -21.20375 -19.28504 -18.06406 -17.42691 -16.67033 -16.32173 -16.10281 -15.59111 -15.18669 -14.92176 -14.53501 -14.31209 -14.03602 -13.88347 -13.68549 -13.65533 -13.34862 -13.02639 -12.69800 -12.49806 -12.37675 -12.33550 -12.20171 -12.05802 -11.88902 -11.59586 -11.43543 -11.30664 -10.86758 -10.85745 -10.81602 -10.24330 -10.02276 -9.71321 -9.32527 -8.96846 -8.55341 -8.49313 -7.65977 -7.55264 -6.54060 -4.20423 1.29857 1.41716 1.65267 2.08309 2.95084 3.19410 3.23016 3.31227 3.49065 3.85835 4.23001 4.30081 4.37951 4.51319 4.59711 4.87725 4.90408 4.97045 5.00347 5.08212 5.23362 5.28774 5.35339 5.47237 5.49888 5.53807 5.62461 5.63719 5.75484 5.77969 5.80624 5.85067 5.97378 6.08207 6.25805 6.36547 6.47380 6.56021 6.60333 6.65131 6.76880 6.91151 7.06264 7.17382 7.38469 7.54673 7.64480 7.87291 8.44593 8.80405 9.39725 10.51525 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012351 B = 0.004724 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.552341 B = 5925.235145 C = 7703.088432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.049 4.049 3 C -0.153 4.153 4 C -0.089 4.089 5 C -0.142 4.142 6 C 0.165 3.835 7 C -0.147 4.147 8 C -0.082 4.082 9 C 0.101 3.899 10 N -0.558 5.558 11 C 0.584 3.416 12 O -0.499 6.499 13 C -0.221 4.221 14 C -0.043 4.043 15 C -0.214 4.214 16 C -0.051 4.051 17 C -0.222 4.222 18 C 0.201 3.799 19 O -0.186 6.186 20 C -0.395 4.395 21 H 0.111 0.889 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.904 3.096 25 H -0.269 1.269 26 H -0.282 1.282 27 H -0.256 1.256 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.139 0.861 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.140 0.860 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.596 2.899 8.866 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.049 4.049 3 C -0.172 4.172 4 C -0.108 4.108 5 C -0.163 4.163 6 C 0.069 3.931 7 C -0.151 4.151 8 C -0.119 4.119 9 C -0.021 4.021 10 N -0.281 5.281 11 C 0.376 3.624 12 O -0.373 6.373 13 C -0.226 4.226 14 C -0.061 4.061 15 C -0.233 4.233 16 C -0.070 4.070 17 C -0.241 4.241 18 C 0.144 3.856 19 O -0.088 6.088 20 C -0.470 4.470 21 H 0.128 0.872 22 C -0.133 4.133 23 N -0.503 5.503 24 Si 0.729 3.271 25 H -0.194 1.194 26 H -0.208 1.208 27 H -0.180 1.180 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.157 0.843 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.158 0.842 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.804 3.514 8.534 20.054 hybrid contribution 0.169 0.504 -0.246 0.586 sum -17.636 4.017 8.288 19.896 Atomic orbital electron populations 1.20741 0.91266 1.02530 1.02206 1.19091 0.95525 0.91181 0.99143 1.20821 0.94115 0.96939 1.05356 1.20882 0.94080 0.97290 0.98517 1.21022 1.01540 0.89806 1.03891 1.18408 0.92264 0.85543 0.96888 1.19799 0.92370 0.94696 1.08193 1.21062 0.96965 0.90488 1.03375 1.22242 0.84281 0.92022 1.03571 1.45948 1.06501 1.04814 1.70835 1.18199 0.79732 0.89355 0.75096 1.90756 1.49903 1.50333 1.46280 1.18561 1.05998 0.92914 1.05080 1.20793 0.96837 0.93088 0.95431 1.20555 1.03248 0.95441 1.04085 1.20990 0.94001 0.98691 0.93285 1.21269 1.05639 0.93511 1.03666 1.18898 0.90082 0.89602 0.87012 1.83620 1.43614 1.39216 1.42326 1.20851 1.07616 0.98325 1.20166 0.87201 1.24467 0.94103 1.00185 0.94547 1.69623 1.18600 1.37696 1.24393 0.86174 0.81070 0.82717 0.77153 1.19413 1.20791 1.18016 0.91238 0.91659 0.91629 0.86033 0.85728 0.84330 0.89427 0.89437 0.89757 0.89637 0.86388 0.86740 0.86621 0.84232 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.88 36.01 0.36 -0.55 16 2 C -0.05 -0.58 5.88 -104.65 -0.61 -1.19 16 3 C -0.15 -1.82 9.71 -39.56 -0.38 -2.20 16 4 C -0.09 -1.22 10.02 -39.71 -0.40 -1.62 16 5 C -0.14 -2.43 9.46 -39.20 -0.37 -2.80 16 6 C 0.17 2.79 6.62 -83.59 -0.55 2.23 16 7 C -0.15 -1.98 6.07 -104.27 -0.63 -2.61 16 8 C -0.08 -0.85 6.33 -27.24 -0.17 -1.02 16 9 C 0.10 1.28 6.15 -3.63 -0.02 1.25 16 10 N -0.56 -9.74 3.13 -114.06 -0.36 -10.10 16 11 C 0.58 12.44 7.09 -12.49 -0.09 12.35 16 12 O -0.50 -12.48 14.57 -6.91 -0.10 -12.58 16 13 C -0.22 -4.51 5.36 -104.82 -0.56 -5.07 16 14 C -0.04 -0.69 8.38 -39.20 -0.33 -1.02 16 15 C -0.21 -3.21 10.02 -39.61 -0.40 -3.61 16 16 C -0.05 -0.84 10.03 -39.53 -0.40 -1.24 16 17 C -0.22 -4.56 9.16 -39.44 -0.36 -4.92 16 18 C 0.20 4.67 6.63 -38.59 -0.26 4.42 16 19 O -0.19 -5.08 7.54 -11.37 -0.09 -5.16 16 20 C -0.39 -11.17 9.95 30.90 0.31 -10.86 16 21 H 0.11 3.08 5.44 -52.49 -0.29 2.80 16 22 C 0.07 2.07 5.49 -17.51 -0.10 1.97 16 23 N -0.87 -24.97 13.96 55.48 0.77 -24.19 16 24 Si 0.90 23.21 28.62 -169.99 -4.86 18.35 16 25 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 27 H -0.26 -6.91 7.11 56.52 0.40 -6.51 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.47 7.71 -51.93 -0.40 0.07 16 30 H 0.06 0.45 8.08 -51.92 -0.42 0.03 16 31 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 32 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.14 2.70 6.29 -52.49 -0.33 2.37 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.09 0.91 5.70 -51.93 -0.30 0.61 16 38 H 0.12 1.54 6.24 -52.48 -0.33 1.21 16 39 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 40 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.14 2.98 5.63 -52.49 -0.30 2.68 16 42 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 349.56 15.07 5.27 5.27 Total: -1.00 -33.10 349.56 -9.21 -42.31 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -4.87 Total: 2.60 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -4.97 Total: -16.49 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.42 Total: -34.29 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.19 Total: -17.75 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -4.86 Total: 18.35 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.10 -9.21 -42.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195246801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.350 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds