Wall clock time and date at job start Tue Mar 31 2020 13:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38272 * 119.92775 * 2 1 4 4 C 1.38253 * 119.83379 * 180.02562 * 3 2 1 5 5 C 1.37881 * 120.22520 * 359.97438 * 4 3 2 6 6 C 1.39612 * 120.27971 * 359.97438 * 5 4 3 7 7 C 1.38135 * 119.92100 * 180.02562 * 2 1 3 8 8 C 1.51215 * 130.98485 * 0.02562 * 7 2 1 9 9 C 1.53746 * 104.57026 * 179.74871 * 8 7 2 10 10 N 1.39753 * 129.33568 * 179.97438 * 6 5 4 11 11 C 1.34776 * 124.97632 * 0.02562 * 10 6 5 12 12 O 1.21602 * 119.99357 * 354.95980 * 11 10 6 13 13 C 1.47501 * 120.00270 * 174.95719 * 11 10 6 14 14 C 1.39677 * 120.19815 * 314.29945 * 13 11 10 15 15 C 1.37823 * 119.91803 * 180.02562 * 14 13 11 16 16 C 1.38580 * 120.32554 * 0.02562 * 15 14 13 17 17 C 1.38030 * 120.40097 * 359.97438 * 16 15 14 18 18 C 1.38831 * 120.07484 * 0.02562 * 17 16 15 19 19 O 1.35520 * 120.15869 * 180.02562 * 18 17 16 20 20 C 1.34809 * 117.00219 * 354.71973 * 19 18 17 21 21 H 1.07994 * 120.00367 * 5.09688 * 20 19 18 22 22 C 1.38704 * 119.99880 * 185.09204 * 20 19 18 23 23 N 1.31516 * 119.99860 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00072 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.46934 * 89.99607 * 24 22 20 26 26 H 1.48495 * 109.47172 * 209.99770 * 24 22 20 27 27 H 1.48504 * 109.47199 * 330.00264 * 24 22 20 28 28 H 1.08996 * 109.47474 * 90.00362 * 1 2 3 29 29 H 1.09002 * 109.47142 * 210.00882 * 1 2 3 30 30 H 1.09007 * 109.47076 * 330.00593 * 1 2 3 31 31 H 1.08003 * 120.07909 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.89005 * 180.02562 * 4 3 2 33 33 H 1.08001 * 119.86270 * 179.97438 * 5 4 3 34 34 H 1.09001 * 110.41774 * 298.73813 * 8 7 2 35 35 H 1.08998 * 110.41335 * 61.06653 * 8 7 2 36 36 H 1.09001 * 110.39923 * 241.34530 * 9 8 7 37 37 H 1.09004 * 110.19253 * 119.20934 * 9 8 7 38 38 H 1.08006 * 120.04128 * 0.04906 * 14 13 11 39 39 H 1.08000 * 119.84020 * 180.27918 * 15 14 13 40 40 H 1.07993 * 119.80046 * 179.97438 * 16 15 14 41 41 H 1.07996 * 119.96378 * 180.02562 * 17 16 15 42 42 H 0.97001 * 119.99650 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1983 0.0000 4 6 3.5794 1.1961 -0.0005 5 6 4.2715 0.0036 -0.0005 6 6 3.5821 -1.2105 0.0005 7 6 2.1960 -1.1972 -0.0005 8 6 1.7014 -2.6262 -0.0017 9 6 2.9810 -3.4784 -0.0083 10 7 4.0847 -2.5145 0.0003 11 6 5.3930 -2.8383 -0.0007 12 8 6.2350 -1.9660 -0.0939 13 6 5.8033 -4.2507 0.1114 14 6 5.2080 -5.0818 1.0631 15 6 5.5962 -6.4005 1.1631 16 6 6.5758 -6.9071 0.3239 17 6 7.1729 -6.0976 -0.6213 18 6 6.7946 -4.7668 -0.7365 19 8 7.3793 -3.9706 -1.6643 20 6 8.3979 -4.5003 -2.3709 21 1 8.6596 -5.5403 -2.2443 22 6 9.1096 -3.7094 -3.2608 23 7 10.1030 -4.2263 -3.9505 24 14 8.6573 -1.9103 -3.4795 25 1 9.4284 -1.0853 -2.5151 26 1 8.9800 -1.4837 -4.8647 27 1 7.2039 -1.7317 -3.2323 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5140 30 1 -0.3633 0.8901 0.5138 31 1 1.6569 2.1337 -0.0004 32 1 4.1191 2.1315 -0.0001 33 1 5.3515 0.0086 -0.0014 34 1 1.1125 -2.8255 0.8937 35 1 1.1103 -2.8232 -0.8961 36 1 3.0222 -4.0949 -0.9063 37 1 3.0207 -4.1044 0.8832 38 1 4.4442 -4.6918 1.7195 39 1 5.1319 -7.0432 1.8964 40 1 6.8738 -7.9415 0.4099 41 1 7.9352 -6.4999 -1.2719 42 1 10.6010 -3.6731 -4.5725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195246801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:03 Heat of formation + Delta-G solvation = -17.354243 kcal Electronic energy + Delta-G solvation = -26891.327753 eV Core-core repulsion = 23187.363792 eV Total energy + Delta-G solvation = -3703.963961 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.33718 -41.04664 -39.59426 -38.27417 -37.49108 -34.60023 -34.12895 -32.89618 -31.35306 -30.90160 -30.19541 -27.44679 -27.41631 -25.64861 -23.96700 -23.59795 -22.68180 -22.24514 -20.70871 -19.94509 -19.01160 -18.10583 -17.62735 -17.34153 -16.71436 -16.62707 -16.38912 -16.01955 -15.88748 -15.56987 -15.45572 -15.08503 -14.93369 -14.42872 -14.32307 -14.18387 -14.17115 -13.68090 -13.35957 -13.25680 -13.07500 -13.01515 -12.89991 -12.79681 -12.72315 -12.44326 -12.37908 -12.17250 -11.87829 -11.58290 -11.16381 -11.05560 -10.92174 -9.97199 -9.55416 -9.25257 -8.79609 -8.65225 -6.34257 -0.06576 0.35810 0.38187 0.56816 1.12754 1.20067 1.38473 1.57704 1.81995 2.15183 2.64118 2.77608 2.87209 3.03539 3.27208 3.56625 3.73652 3.91844 4.00897 4.07279 4.17579 4.21148 4.24679 4.37983 4.42801 4.48909 4.55774 4.63560 4.71997 4.75952 4.88516 4.91444 4.98415 5.02296 5.04204 5.21270 5.26329 5.31315 5.41432 5.50080 5.53604 5.56887 5.62328 5.64976 5.77866 6.08001 6.08842 6.24626 6.71024 6.93506 7.47566 8.45879 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012351 B = 0.004724 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.552341 B = 5925.235145 C = 7703.088432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.047 4.047 3 C -0.144 4.144 4 C -0.097 4.097 5 C -0.179 4.179 6 C 0.119 3.881 7 C -0.141 4.141 8 C -0.072 4.072 9 C 0.088 3.912 10 N -0.557 5.557 11 C 0.571 3.429 12 O -0.559 6.559 13 C -0.225 4.225 14 C -0.035 4.035 15 C -0.177 4.177 16 C -0.041 4.041 17 C -0.241 4.241 18 C 0.160 3.840 19 O -0.233 6.233 20 C -0.400 4.400 21 H 0.098 0.902 22 C 0.030 3.970 23 N -0.906 5.906 24 Si 0.953 3.047 25 H -0.277 1.277 26 H -0.255 1.255 27 H -0.287 1.287 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.157 0.843 32 H 0.139 0.861 33 H 0.096 0.904 34 H 0.125 0.875 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.159 0.841 39 H 0.172 0.828 40 H 0.157 0.843 41 H 0.120 0.880 42 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.037 1.710 11.627 26.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.048 4.048 3 C -0.162 4.162 4 C -0.115 4.115 5 C -0.200 4.200 6 C 0.024 3.976 7 C -0.144 4.144 8 C -0.109 4.109 9 C -0.032 4.032 10 N -0.280 5.280 11 C 0.364 3.636 12 O -0.437 6.437 13 C -0.229 4.229 14 C -0.053 4.053 15 C -0.195 4.195 16 C -0.059 4.059 17 C -0.260 4.260 18 C 0.108 3.892 19 O -0.139 6.139 20 C -0.476 4.476 21 H 0.116 0.884 22 C -0.170 4.170 23 N -0.546 5.546 24 Si 0.778 3.222 25 H -0.203 1.203 26 H -0.179 1.179 27 H -0.213 1.213 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.175 0.825 32 H 0.157 0.843 33 H 0.114 0.886 34 H 0.143 0.857 35 H 0.127 0.873 36 H 0.099 0.901 37 H 0.131 0.869 38 H 0.176 0.824 39 H 0.190 0.810 40 H 0.174 0.826 41 H 0.137 0.863 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.329 2.302 11.324 26.034 hybrid contribution 1.494 0.764 -0.744 1.835 sum -21.835 3.065 10.580 24.457 Atomic orbital electron populations 1.20832 0.87812 1.04353 1.03418 1.19639 0.97873 0.90281 0.96981 1.21285 0.93117 0.98833 1.03006 1.21100 0.95454 0.96549 0.98417 1.20984 0.99959 0.92124 1.06947 1.18781 0.94154 0.85025 0.99622 1.20243 0.90630 0.97065 1.06439 1.21197 0.96000 0.87487 1.06181 1.22662 0.83816 0.91994 1.04723 1.45964 1.06079 1.06404 1.69503 1.18524 0.80897 0.89365 0.74858 1.90726 1.51981 1.51749 1.49207 1.18943 1.05425 0.93224 1.05338 1.21296 0.96837 0.93176 0.94005 1.21250 1.00436 0.95134 1.02642 1.21487 0.93100 1.00004 0.91321 1.21334 1.06281 0.93149 1.05220 1.19594 0.91134 0.90765 0.87723 1.83604 1.44821 1.40522 1.44911 1.20845 1.08355 0.97908 1.20444 0.88434 1.24942 0.94589 1.02406 0.95108 1.69655 1.20111 1.38559 1.26269 0.85499 0.78494 0.80184 0.78049 1.20286 1.17857 1.21283 0.90103 0.89936 0.89861 0.82513 0.84321 0.88610 0.85679 0.87294 0.90070 0.86910 0.82362 0.81041 0.82560 0.86272 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.88 71.24 0.70 -0.47 16 2 C -0.05 -0.94 5.88 -19.88 -0.12 -1.06 16 3 C -0.14 -3.05 9.71 22.28 0.22 -2.84 16 4 C -0.10 -2.69 10.02 22.19 0.22 -2.47 16 5 C -0.18 -6.64 9.46 22.52 0.21 -6.43 16 6 C 0.12 4.10 6.62 38.30 0.25 4.36 16 7 C -0.14 -3.43 6.07 -19.63 -0.12 -3.55 16 8 C -0.07 -1.18 6.33 30.26 0.19 -0.99 16 9 C 0.09 1.99 6.15 86.62 0.53 2.52 16 10 N -0.56 -19.68 3.13 -633.03 -1.98 -21.66 16 11 C 0.57 25.67 7.09 86.69 0.61 26.28 16 12 O -0.56 -30.77 14.57 7.61 0.11 -30.66 16 13 C -0.22 -9.28 5.36 -19.99 -0.11 -9.38 16 14 C -0.04 -0.99 8.38 22.52 0.19 -0.81 16 15 C -0.18 -4.25 10.02 22.25 0.22 -4.03 16 16 C -0.04 -1.21 10.03 22.30 0.22 -0.99 16 17 C -0.24 -10.10 9.16 22.36 0.20 -9.89 16 18 C 0.16 7.83 6.63 22.91 0.15 7.98 16 19 O -0.23 -13.82 7.54 -8.35 -0.06 -13.89 16 20 C -0.40 -24.54 9.95 67.93 0.68 -23.87 16 21 H 0.10 5.99 5.44 -2.91 -0.02 5.97 16 22 C 0.03 1.85 5.49 84.85 0.47 2.32 16 23 N -0.91 -55.40 13.96 21.62 0.30 -55.10 16 24 Si 0.95 51.92 28.62 68.60 1.96 53.89 16 25 H -0.28 -15.17 7.11 99.48 0.71 -14.46 16 26 H -0.25 -12.45 7.11 99.48 0.71 -11.75 16 27 H -0.29 -16.88 7.11 99.48 0.71 -16.17 16 28 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.66 7.71 -2.39 -0.02 0.64 16 30 H 0.08 0.67 8.08 -2.38 -0.02 0.65 16 31 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 33 H 0.10 4.29 6.29 -2.91 -0.02 4.27 16 34 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.11 1.38 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.11 1.84 5.70 -2.39 -0.01 1.82 16 38 H 0.16 3.24 6.24 -2.91 -0.02 3.22 16 39 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 40 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 41 H 0.12 5.43 5.63 -2.91 -0.02 5.42 16 42 H 0.29 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -85.52 349.56 6.13 -79.39 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.06 Total: 11.35 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: 4.74 Total: -23.31 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -1.68 Total: -76.76 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: 0.05 Total: -44.55 kcal Atomic # 14 Polarization: 51.92 SS G_CDS: 1.96 Total: 53.89 kcal Total: -85.52 6.13 -79.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195246801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.038 kcal (2) G-P(sol) polarization free energy of solvation -85.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds