Wall clock time and date at job start Tue Mar 31 2020 14:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38306 * 119.96655 * 2 1 4 4 C 1.38260 * 120.14932 * 180.02562 * 3 2 1 5 5 C 1.38126 * 120.07363 * 359.71898 * 4 3 2 6 6 C 1.38884 * 119.92392 * 0.53692 * 5 4 3 7 7 N 1.39812 * 120.07124 * 179.73515 * 6 5 4 8 8 C 1.34775 * 120.00508 * 329.99019 * 7 6 5 9 9 O 1.21736 * 119.99414 * 353.63200 * 8 7 6 10 10 C 1.46208 * 119.99888 * 173.63105 * 8 7 6 11 11 C 1.35052 * 119.99848 * 172.61273 * 10 8 7 12 12 C 1.46957 * 119.99677 * 348.75689 * 11 10 8 13 13 C 1.40022 * 120.09945 * 312.18063 * 12 11 10 14 14 C 1.37597 * 119.89544 * 180.02562 * 13 12 11 15 15 C 1.39171 * 120.10333 * 0.27586 * 14 13 12 16 16 O 1.35572 * 119.90033 * 179.70170 * 15 14 13 17 17 C 1.34783 * 116.99604 * 6.14128 * 16 15 14 18 18 H 1.07994 * 120.00338 * 5.48633 * 17 16 15 19 19 C 1.38722 * 119.99683 * 185.48886 * 17 16 15 20 20 N 1.31510 * 119.99920 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99993 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46933 * 90.00092 * 21 19 17 23 23 H 1.48499 * 109.47069 * 210.00135 * 21 19 17 24 24 H 1.48498 * 109.47143 * 329.99981 * 21 19 17 25 25 C 1.39181 * 120.20221 * 359.44559 * 15 14 13 26 26 C 1.37598 * 120.10006 * 0.55781 * 25 15 14 27 27 C 1.38087 * 119.96090 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46667 * 270.02226 * 1 2 3 29 29 H 1.08998 * 109.47090 * 30.01634 * 1 2 3 30 30 H 1.08998 * 109.47447 * 150.01731 * 1 2 3 31 31 H 1.08004 * 119.92547 * 359.97438 * 3 2 1 32 32 H 1.08006 * 119.96508 * 180.02562 * 4 3 2 33 33 H 1.08000 * 120.03862 * 180.29366 * 5 4 3 34 34 H 0.97006 * 119.99566 * 149.98243 * 7 6 5 35 35 H 1.07994 * 120.00404 * 352.60826 * 10 8 7 36 36 H 1.07997 * 120.00168 * 168.74721 * 11 10 8 37 37 H 1.07998 * 120.05375 * 0.02562 * 13 12 11 38 38 H 1.08006 * 119.94550 * 179.97438 * 14 13 12 39 39 H 0.96999 * 119.99975 * 179.97438 * 20 19 17 40 40 H 1.07994 * 119.94834 * 180.25245 * 25 15 14 41 41 H 1.08001 * 120.04919 * 179.74940 * 26 25 15 42 42 H 1.08000 * 120.03571 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1982 0.0000 4 6 3.5805 1.2026 -0.0005 5 6 4.2765 0.0095 0.0048 6 6 3.5859 -1.1955 -0.0006 7 7 4.2873 -2.4049 -0.0008 8 6 5.5018 -2.4796 -0.5802 9 8 5.9383 -1.5292 -1.2033 10 6 6.2951 -3.7019 -0.4604 11 6 7.4418 -3.8341 -1.1613 12 6 7.7690 -2.8721 -2.2230 13 6 6.8070 -2.5293 -3.1808 14 6 7.1180 -1.6285 -4.1734 15 6 8.3883 -1.0628 -4.2296 16 8 8.6922 -0.1804 -5.2129 17 6 7.6863 0.2017 -6.0245 18 1 6.6763 -0.1229 -5.8223 19 6 7.9483 1.0120 -7.1195 20 7 6.9668 1.3845 -7.9117 21 14 9.6951 1.5742 -7.4688 22 1 10.3654 0.5868 -8.3526 23 1 9.6641 2.8984 -8.1401 24 1 10.4445 1.6841 -6.1915 25 6 9.3460 -1.3962 -3.2763 26 6 9.0441 -2.2961 -2.2802 27 6 2.1967 -1.1963 0.0005 28 1 -0.3632 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6561 2.1325 -0.0004 32 1 4.1170 2.1400 -0.0001 33 1 5.3564 0.0136 0.0092 34 1 3.8997 -3.1904 0.4162 35 1 5.9640 -4.4991 0.1887 36 1 8.1185 -4.6466 -0.9415 37 1 5.8223 -2.9711 -3.1406 38 1 6.3766 -1.3638 -4.9129 39 1 7.1499 1.9514 -8.6772 40 1 10.3292 -0.9517 -3.3215 41 1 9.7891 -2.5573 -1.5432 42 1 1.6566 -2.1316 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229792698.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:05 Heat of formation + Delta-G solvation = 17.529229 kcal Electronic energy + Delta-G solvation = -25832.053458 eV Core-core repulsion = 22129.602158 eV Total energy + Delta-G solvation = -3702.451301 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.51077 -39.18665 -38.50871 -36.70399 -34.79341 -33.22204 -32.44211 -32.25260 -30.20561 -29.96733 -28.22363 -26.89647 -25.33991 -23.96052 -22.32994 -22.13693 -21.47320 -20.44968 -19.25135 -17.92312 -17.54954 -17.07644 -16.76914 -16.15471 -15.32373 -14.99585 -14.67283 -14.38369 -14.10249 -13.97676 -13.85193 -13.76040 -13.66460 -13.40235 -13.11029 -12.88472 -12.58185 -12.33747 -12.27894 -12.18788 -12.17633 -11.68298 -11.36203 -11.12630 -10.95113 -10.81533 -10.67687 -10.26694 -10.13284 -9.58907 -9.48832 -9.25912 -8.78118 -8.70033 -8.13991 -7.91375 -7.05271 -6.41963 -4.05697 1.01504 1.42510 1.48979 2.29713 2.52091 3.15661 3.22708 3.25908 3.40913 3.41499 3.90375 4.23916 4.57197 4.76241 4.84578 4.90530 4.92825 5.08028 5.11504 5.12624 5.29407 5.41282 5.45008 5.49615 5.57925 5.63441 5.72210 5.72509 5.76602 6.04745 6.14949 6.17895 6.27704 6.37005 6.43022 6.52401 6.60601 6.61780 6.64582 6.89083 7.12078 7.13640 7.26029 7.38776 7.49908 7.65230 7.84191 8.05452 8.34074 8.92878 9.56450 10.65439 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.003558 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.363079 B = 7867.276761 C = 9728.605471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.071 4.071 3 C -0.143 4.143 4 C -0.093 4.093 5 C -0.128 4.128 6 C 0.161 3.839 7 N -0.678 5.678 8 C 0.537 3.463 9 O -0.489 6.489 10 C -0.261 4.261 11 C 0.030 3.970 12 C -0.178 4.178 13 C 0.000 4.000 14 C -0.225 4.225 15 C 0.175 3.825 16 O -0.212 6.212 17 C -0.387 4.387 18 H 0.107 0.893 19 C 0.064 3.936 20 N -0.876 5.876 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.259 1.259 25 C -0.205 4.205 26 C -0.048 4.048 27 C -0.156 4.156 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.138 0.862 34 H 0.406 0.594 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.099 0.901 38 H 0.130 0.870 39 H 0.280 0.720 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.792 -8.564 18.353 21.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.071 4.071 3 C -0.162 4.162 4 C -0.112 4.112 5 C -0.148 4.148 6 C 0.066 3.934 7 N -0.323 5.323 8 C 0.328 3.672 9 O -0.363 6.363 10 C -0.282 4.282 11 C 0.010 3.990 12 C -0.179 4.179 13 C -0.018 4.018 14 C -0.244 4.244 15 C 0.122 3.878 16 O -0.116 6.116 17 C -0.462 4.462 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.513 5.513 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.207 1.207 24 H -0.183 1.183 25 C -0.224 4.224 26 C -0.067 4.067 27 C -0.177 4.177 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.137 0.863 32 H 0.142 0.858 33 H 0.156 0.844 34 H 0.241 0.759 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.117 0.883 38 H 0.148 0.852 39 H 0.090 0.910 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.263 -7.664 17.611 20.534 hybrid contribution 0.184 -0.172 -0.071 0.262 sum -7.079 -7.836 17.540 20.474 Atomic orbital electron populations 1.20766 0.91202 1.02802 1.02065 1.19633 0.95783 0.92622 0.99099 1.20975 0.94278 0.97371 1.03585 1.21060 0.94049 0.97906 0.98194 1.21263 1.01382 0.90805 1.01366 1.17724 0.90708 0.86014 0.98967 1.43587 1.19130 1.11188 1.58366 1.18639 0.80530 0.89626 0.78414 1.91016 1.68949 1.38669 1.37637 1.22597 0.99640 0.98206 1.07776 1.22389 0.92978 0.94493 0.89095 1.18351 0.95335 1.05049 0.99164 1.20601 0.95581 0.93641 0.91993 1.21079 0.97879 1.02620 1.02815 1.19294 0.92815 0.87611 0.88129 1.83514 1.38141 1.51984 1.37959 1.20826 0.88459 1.30749 1.06176 0.87556 1.24499 0.99454 0.95867 0.94193 1.69630 1.31942 1.34604 1.15136 0.86178 0.83261 0.78043 0.79428 1.19855 1.20710 1.18267 1.20002 0.99439 1.05390 0.97590 1.20598 0.94465 0.95450 0.96150 1.20663 0.91973 0.98163 1.06901 0.91339 0.91465 0.91669 0.86254 0.85782 0.84402 0.75919 0.85674 0.85616 0.88319 0.85191 0.90989 0.86597 0.86955 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 36.01 0.36 -0.56 16 2 C -0.07 -0.80 5.88 -104.65 -0.62 -1.42 16 3 C -0.14 -1.73 9.70 -39.55 -0.38 -2.11 16 4 C -0.09 -1.27 10.04 -39.61 -0.40 -1.67 16 5 C -0.13 -1.95 8.67 -39.38 -0.34 -2.29 16 6 C 0.16 2.18 6.34 -83.73 -0.53 1.65 16 7 N -0.68 -8.02 5.34 -11.18 -0.06 -8.08 16 8 C 0.54 7.79 6.66 -13.06 -0.09 7.70 16 9 O -0.49 -9.29 10.02 5.16 0.05 -9.23 16 10 C -0.26 -3.04 9.92 -37.52 -0.37 -3.42 16 11 C 0.03 0.38 9.78 -37.18 -0.36 0.02 16 12 C -0.18 -3.10 4.34 -105.03 -0.46 -3.55 16 13 C 0.00 0.01 6.78 -39.15 -0.27 -0.26 16 14 C -0.22 -5.22 9.11 -39.47 -0.36 -5.58 16 15 C 0.17 4.23 6.66 -38.88 -0.26 3.97 16 16 O -0.21 -5.77 8.57 0.73 0.01 -5.77 16 17 C -0.39 -11.23 9.89 30.91 0.31 -10.93 16 18 H 0.11 3.20 5.52 -52.49 -0.29 2.91 16 19 C 0.06 1.82 5.49 -17.51 -0.10 1.72 16 20 N -0.88 -25.72 13.96 55.48 0.77 -24.95 16 21 Si 0.91 21.99 28.62 -169.99 -4.86 17.12 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 25 C -0.20 -4.24 9.97 -39.46 -0.39 -4.64 16 26 C -0.05 -0.85 9.78 -39.15 -0.38 -1.24 16 27 C -0.16 -1.82 9.61 -39.38 -0.38 -2.20 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 30 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 33 H 0.14 2.35 6.20 -52.49 -0.33 2.02 16 34 H 0.41 3.24 8.78 -40.82 -0.36 2.88 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 37 H 0.10 1.84 7.43 -52.49 -0.39 1.45 16 38 H 0.13 3.21 5.70 -52.48 -0.30 2.91 16 39 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 359.11 15.07 5.41 5.41 Total: -1.00 -33.28 359.11 -8.72 -42.00 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.02 Total: 8.29 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -5.02 Total: -24.79 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.71 Total: -33.03 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.06 Total: -15.00 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.86 Total: 17.12 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.28 -8.72 -42.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229792698.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.530 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds