Wall clock time and date at job start Tue Mar 31 2020 14:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38306 * 119.96655 * 2 1 4 4 C 1.38260 * 120.14932 * 180.02562 * 3 2 1 5 5 C 1.38126 * 120.07363 * 359.71898 * 4 3 2 6 6 C 1.38884 * 119.92392 * 0.53692 * 5 4 3 7 7 N 1.39812 * 120.07124 * 179.73515 * 6 5 4 8 8 C 1.34775 * 120.00508 * 329.99019 * 7 6 5 9 9 O 1.21736 * 119.99414 * 353.63200 * 8 7 6 10 10 C 1.46208 * 119.99888 * 173.63105 * 8 7 6 11 11 C 1.35052 * 119.99848 * 172.61273 * 10 8 7 12 12 C 1.46957 * 119.99677 * 348.75689 * 11 10 8 13 13 C 1.40022 * 120.09945 * 312.18063 * 12 11 10 14 14 C 1.37597 * 119.89544 * 180.02562 * 13 12 11 15 15 C 1.39171 * 120.10333 * 0.27586 * 14 13 12 16 16 O 1.35572 * 119.90033 * 179.70170 * 15 14 13 17 17 C 1.34783 * 116.99604 * 6.14128 * 16 15 14 18 18 H 1.07994 * 120.00338 * 5.48633 * 17 16 15 19 19 C 1.38722 * 119.99683 * 185.48886 * 17 16 15 20 20 N 1.31510 * 119.99920 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99993 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46933 * 90.00092 * 21 19 17 23 23 H 1.48499 * 109.47069 * 210.00135 * 21 19 17 24 24 H 1.48498 * 109.47143 * 329.99981 * 21 19 17 25 25 C 1.39181 * 120.20221 * 359.44559 * 15 14 13 26 26 C 1.37598 * 120.10006 * 0.55781 * 25 15 14 27 27 C 1.38087 * 119.96090 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46667 * 270.02226 * 1 2 3 29 29 H 1.08998 * 109.47090 * 30.01634 * 1 2 3 30 30 H 1.08998 * 109.47447 * 150.01731 * 1 2 3 31 31 H 1.08004 * 119.92547 * 359.97438 * 3 2 1 32 32 H 1.08006 * 119.96508 * 180.02562 * 4 3 2 33 33 H 1.08000 * 120.03862 * 180.29366 * 5 4 3 34 34 H 0.97006 * 119.99566 * 149.98243 * 7 6 5 35 35 H 1.07994 * 120.00404 * 352.60826 * 10 8 7 36 36 H 1.07997 * 120.00168 * 168.74721 * 11 10 8 37 37 H 1.07998 * 120.05375 * 0.02562 * 13 12 11 38 38 H 1.08006 * 119.94550 * 179.97438 * 14 13 12 39 39 H 0.96999 * 119.99975 * 179.97438 * 20 19 17 40 40 H 1.07994 * 119.94834 * 180.25245 * 25 15 14 41 41 H 1.08001 * 120.04919 * 179.74940 * 26 25 15 42 42 H 1.08000 * 120.03571 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1982 0.0000 4 6 3.5805 1.2026 -0.0005 5 6 4.2765 0.0095 0.0048 6 6 3.5859 -1.1955 -0.0006 7 7 4.2873 -2.4049 -0.0008 8 6 5.5018 -2.4796 -0.5802 9 8 5.9383 -1.5292 -1.2033 10 6 6.2951 -3.7019 -0.4604 11 6 7.4418 -3.8341 -1.1613 12 6 7.7690 -2.8721 -2.2230 13 6 6.8070 -2.5293 -3.1808 14 6 7.1180 -1.6285 -4.1734 15 6 8.3883 -1.0628 -4.2296 16 8 8.6922 -0.1804 -5.2129 17 6 7.6863 0.2017 -6.0245 18 1 6.6763 -0.1229 -5.8223 19 6 7.9483 1.0120 -7.1195 20 7 6.9668 1.3845 -7.9117 21 14 9.6951 1.5742 -7.4688 22 1 10.3654 0.5868 -8.3526 23 1 9.6641 2.8984 -8.1401 24 1 10.4445 1.6841 -6.1915 25 6 9.3460 -1.3962 -3.2763 26 6 9.0441 -2.2961 -2.2802 27 6 2.1967 -1.1963 0.0005 28 1 -0.3632 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6561 2.1325 -0.0004 32 1 4.1170 2.1400 -0.0001 33 1 5.3564 0.0136 0.0092 34 1 3.8997 -3.1904 0.4162 35 1 5.9640 -4.4991 0.1887 36 1 8.1185 -4.6466 -0.9415 37 1 5.8223 -2.9711 -3.1406 38 1 6.3766 -1.3638 -4.9129 39 1 7.1499 1.9514 -8.6772 40 1 10.3292 -0.9517 -3.3215 41 1 9.7891 -2.5573 -1.5432 42 1 1.6566 -2.1316 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229792698.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:04 Heat of formation + Delta-G solvation = -2.898825 kcal Electronic energy + Delta-G solvation = -25832.939285 eV Core-core repulsion = 22129.602158 eV Total energy + Delta-G solvation = -3703.337127 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.63935 -40.81638 -39.71604 -38.30103 -35.92572 -34.70190 -34.17622 -33.32227 -31.84687 -31.08307 -29.66648 -27.74776 -27.28244 -25.21613 -23.70091 -23.33991 -22.95336 -21.61708 -20.40568 -19.88140 -19.23086 -18.31798 -17.95431 -17.18451 -16.71949 -16.42310 -16.02139 -15.86307 -15.74782 -15.54942 -15.27975 -14.87360 -14.68924 -14.57367 -14.45606 -14.19908 -14.08144 -14.02001 -13.81508 -13.21747 -13.07241 -12.99454 -12.74096 -12.55362 -12.41513 -12.34258 -12.06213 -11.95132 -11.41210 -11.32139 -11.02198 -10.70824 -10.46140 -9.72698 -9.68570 -8.98964 -8.68527 -8.54203 -6.25906 -0.13411 0.41063 0.42627 0.65690 1.03428 1.27662 1.33948 1.49695 2.17585 2.25398 2.32260 2.76023 2.88559 3.08134 3.15220 3.81900 3.93977 3.96791 4.00545 4.05112 4.15572 4.24152 4.42213 4.48473 4.51378 4.58051 4.60889 4.69152 4.86877 4.87054 4.95245 4.95533 5.13025 5.19011 5.24625 5.28933 5.34788 5.45999 5.48990 5.59694 5.60638 5.66753 5.74412 5.79555 5.88138 6.11903 6.24377 6.56073 6.79303 7.28306 7.53973 8.58029 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.003558 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.363079 B = 7867.276761 C = 9728.605471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.073 4.073 3 C -0.150 4.150 4 C -0.112 4.112 5 C -0.158 4.158 6 C 0.145 3.855 7 N -0.660 5.660 8 C 0.522 3.478 9 O -0.544 6.544 10 C -0.228 4.228 11 C 0.012 3.988 12 C -0.146 4.146 13 C -0.007 4.007 14 C -0.246 4.246 15 C 0.129 3.871 16 O -0.241 6.241 17 C -0.402 4.402 18 H 0.071 0.929 19 C 0.010 3.990 20 N -0.923 5.923 21 Si 0.976 3.024 22 H -0.262 1.262 23 H -0.264 1.264 24 H -0.263 1.263 25 C -0.204 4.204 26 C -0.048 4.048 27 C -0.154 4.154 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.140 0.860 32 H 0.125 0.875 33 H 0.109 0.891 34 H 0.427 0.573 35 H 0.181 0.819 36 H 0.180 0.820 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.286 0.714 40 H 0.130 0.870 41 H 0.163 0.837 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.855 -11.615 21.914 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.074 4.074 3 C -0.168 4.168 4 C -0.131 4.131 5 C -0.179 4.179 6 C 0.050 3.950 7 N -0.306 5.306 8 C 0.315 3.685 9 O -0.422 6.422 10 C -0.248 4.248 11 C -0.007 4.007 12 C -0.147 4.147 13 C -0.025 4.025 14 C -0.265 4.265 15 C 0.080 3.920 16 O -0.148 6.148 17 C -0.478 4.478 18 H 0.088 0.912 19 C -0.189 4.189 20 N -0.563 5.563 21 Si 0.797 3.203 22 H -0.187 1.187 23 H -0.188 1.188 24 H -0.187 1.187 25 C -0.223 4.223 26 C -0.065 4.065 27 C -0.175 4.175 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.158 0.842 32 H 0.143 0.857 33 H 0.127 0.873 34 H 0.266 0.734 35 H 0.199 0.801 36 H 0.197 0.803 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.148 0.852 41 H 0.181 0.819 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.368 -10.782 21.244 24.936 hybrid contribution -0.043 0.529 -0.725 0.898 sum -7.411 -10.253 20.519 24.105 Atomic orbital electron populations 1.20832 0.88560 1.03688 1.03517 1.20118 0.97732 0.92151 0.97357 1.21283 0.93615 0.98954 1.02988 1.21228 0.95218 0.97691 0.98928 1.21193 1.00280 0.92546 1.03859 1.17889 0.91695 0.85980 0.99444 1.43425 1.18342 1.11457 1.57390 1.19403 0.81242 0.90155 0.77731 1.91031 1.70342 1.40792 1.40008 1.23052 0.97347 0.97401 1.07008 1.22691 0.94658 0.94997 0.88351 1.18936 0.94108 1.03254 0.98410 1.20723 0.96778 0.93150 0.91870 1.21013 0.97308 1.04569 1.03631 1.19825 0.94296 0.88872 0.89011 1.83448 1.37171 1.54692 1.39522 1.20664 0.87934 1.31876 1.07324 0.91173 1.25364 1.03948 0.95815 0.93744 1.69720 1.34043 1.36321 1.16258 0.85155 0.77690 0.78380 0.79062 1.18655 1.18846 1.18737 1.20394 0.99263 1.05556 0.97111 1.21179 0.95791 0.93725 0.95843 1.21016 0.91154 0.99698 1.05596 0.89447 0.90902 0.90539 0.84218 0.85661 0.87253 0.73376 0.80136 0.80315 0.87586 0.88782 0.90426 0.85204 0.81910 0.83054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 10.01 71.24 0.71 -0.76 16 2 C -0.07 -1.52 5.88 -19.88 -0.12 -1.64 16 3 C -0.15 -3.55 9.70 22.29 0.22 -3.33 16 4 C -0.11 -3.21 10.04 22.25 0.22 -2.98 16 5 C -0.16 -5.05 8.67 22.40 0.19 -4.86 16 6 C 0.14 3.82 6.34 38.19 0.24 4.06 16 7 N -0.66 -14.07 5.34 -307.48 -1.64 -15.71 16 8 C 0.52 14.03 6.66 86.31 0.57 14.61 16 9 O -0.54 -20.89 10.02 -4.46 -0.04 -20.93 16 10 C -0.23 -4.08 9.92 23.61 0.23 -3.84 16 11 C 0.01 0.24 9.78 23.82 0.23 0.47 16 12 C -0.15 -4.74 4.34 -20.13 -0.09 -4.82 16 13 C -0.01 -0.28 6.78 22.55 0.15 -0.13 16 14 C -0.25 -12.40 9.11 22.34 0.20 -12.20 16 15 C 0.13 6.67 6.66 22.72 0.15 6.83 16 16 O -0.24 -14.14 8.57 -20.30 -0.17 -14.31 16 17 C -0.40 -25.52 9.89 67.94 0.67 -24.85 16 18 H 0.07 4.78 5.52 -2.91 -0.02 4.77 16 19 C 0.01 0.59 5.49 84.86 0.47 1.06 16 20 N -0.92 -57.77 13.96 21.62 0.30 -57.47 16 21 Si 0.98 47.48 28.62 68.60 1.96 49.45 16 22 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.26 -12.81 7.11 99.48 0.71 -12.11 16 25 C -0.20 -8.47 9.97 22.35 0.22 -8.25 16 26 C -0.05 -1.55 9.78 22.55 0.22 -1.33 16 27 C -0.15 -3.28 9.61 22.40 0.22 -3.07 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 30 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 31 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 32 H 0.13 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.11 4.05 6.20 -2.91 -0.02 4.03 16 34 H 0.43 5.08 8.78 -92.70 -0.81 4.27 16 35 H 0.18 1.36 8.06 -2.91 -0.02 1.33 16 36 H 0.18 1.93 8.06 -2.91 -0.02 1.90 16 37 H 0.11 4.03 7.43 -2.91 -0.02 4.00 16 38 H 0.09 5.31 5.70 -2.91 -0.02 5.29 16 39 H 0.29 16.28 8.31 -92.71 -0.77 15.51 16 40 H 0.13 4.92 8.06 -2.91 -0.02 4.89 16 41 H 0.16 3.72 8.06 -2.91 -0.02 3.69 16 42 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -83.63 359.11 5.38 -78.25 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.24 Total: 25.75 kcal Atomic # 6 Polarization: -49.76 SS G_CDS: 4.73 Total: -45.03 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -1.34 Total: -73.18 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -0.22 Total: -35.24 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 1.96 Total: 49.45 kcal Total: -83.63 5.38 -78.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229792698.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.352 kcal (2) G-P(sol) polarization free energy of solvation -83.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds