Wall clock time and date at job start Tue Mar 31 2020 14:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38123 * 120.03877 * 2 1 4 4 C 1.38265 * 120.07452 * 180.29412 * 3 2 1 5 5 C 1.38309 * 120.14317 * 359.72014 * 4 3 2 6 6 C 1.38074 * 120.07572 * 359.97438 * 5 4 3 7 7 C 1.38874 * 120.03553 * 179.71715 * 2 1 3 8 8 N 1.39817 * 120.07516 * 359.97438 * 7 2 1 9 9 C 1.34777 * 120.00089 * 153.49761 * 8 7 2 10 10 O 1.21734 * 119.99984 * 4.43006 * 9 8 7 11 11 C 1.46218 * 120.00078 * 184.43185 * 9 8 7 12 12 C 1.35043 * 119.99827 * 186.66221 * 11 9 8 13 13 C 1.46949 * 120.00081 * 11.44648 * 12 11 9 14 14 C 1.40023 * 120.10360 * 43.47012 * 13 12 11 15 15 C 1.37598 * 119.89737 * 179.97438 * 14 13 12 16 16 C 1.39175 * 120.10370 * 0.27156 * 15 14 13 17 17 O 1.35568 * 119.90043 * 179.72907 * 16 15 14 18 18 C 1.34783 * 116.99864 * 5.79467 * 17 16 15 19 19 H 1.07999 * 119.99679 * 5.32699 * 18 17 16 20 20 C 1.38719 * 119.99682 * 185.33032 * 18 17 16 21 21 N 1.31504 * 120.00236 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99860 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46898 * 60.00042 * 22 20 18 24 24 H 1.48495 * 109.47054 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46866 * 300.00293 * 22 20 18 26 26 C 1.39188 * 120.20053 * 359.44774 * 16 15 14 27 27 C 1.37597 * 120.09951 * 0.55396 * 26 16 15 28 28 H 1.08993 * 109.47412 * 270.28118 * 1 2 3 29 29 H 1.09007 * 109.47085 * 30.28340 * 1 2 3 30 30 H 1.09005 * 109.47222 * 150.27667 * 1 2 3 31 31 H 1.07999 * 119.96122 * 0.03632 * 3 2 1 32 32 H 1.07995 * 119.92750 * 179.73751 * 4 3 2 33 33 H 1.07997 * 119.95899 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.03927 * 180.02562 * 6 5 4 35 35 H 0.97002 * 120.00011 * 333.49948 * 8 7 2 36 36 H 1.07996 * 119.99633 * 6.65550 * 11 9 8 37 37 H 1.08003 * 119.99381 * 191.44844 * 12 11 9 38 38 H 1.08000 * 120.05373 * 359.95372 * 14 13 12 39 39 H 1.08004 * 119.94861 * 180.02562 * 15 14 13 40 40 H 0.97002 * 120.00169 * 179.97438 * 21 20 18 41 41 H 1.07997 * 119.94508 * 180.27480 * 26 16 15 42 42 H 1.07997 * 120.04697 * 179.74073 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1957 0.0000 4 6 3.5811 1.1966 -0.0061 5 6 4.2764 0.0010 -0.0065 6 6 3.5913 -1.1978 -0.0001 7 6 2.2021 -1.2022 0.0059 8 7 1.5054 -2.4144 0.0125 9 6 2.0749 -3.5219 -0.5029 10 8 3.2250 -3.4862 -0.9004 11 6 1.3115 -4.7663 -0.5846 12 6 1.9198 -5.9072 -0.9742 13 6 3.3850 -5.9620 -1.0730 14 6 4.1783 -5.3971 -0.0670 15 6 5.5498 -5.4512 -0.1635 16 6 6.1488 -6.0614 -1.2617 17 8 7.5004 -6.1075 -1.3553 18 6 8.2028 -5.6535 -0.2984 19 1 7.6891 -5.3558 0.6037 20 6 9.5856 -5.5685 -0.3695 21 7 10.2110 -5.9304 -1.4682 22 14 10.5591 -4.9385 1.0950 23 1 10.3134 -5.8164 2.2673 24 1 12.0072 -4.9445 0.7663 25 1 10.1304 -3.5532 1.4155 26 6 5.3642 -6.6294 -2.2613 27 6 3.9920 -6.5800 -2.1732 28 1 -0.3634 0.0050 1.0276 29 1 -0.3633 0.8875 -0.5183 30 1 -0.3634 -0.8925 -0.5095 31 1 1.6584 2.1310 0.0006 32 1 4.1192 2.1329 -0.0104 33 1 5.3563 0.0051 -0.0117 34 1 4.1349 -2.1311 0.0001 35 1 0.6120 -2.4583 0.3879 36 1 0.2612 -4.7728 -0.3333 37 1 1.3294 -6.7795 -1.2131 38 1 3.7145 -4.9193 0.7833 39 1 6.1626 -5.0161 0.6122 40 1 11.1779 -5.8706 -1.5181 41 1 5.8333 -7.1057 -3.1095 42 1 3.3841 -7.0173 -2.9514 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229794247.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:08 Heat of formation + Delta-G solvation = 22.408486 kcal Electronic energy + Delta-G solvation = -26091.240691 eV Core-core repulsion = 22389.000971 eV Total energy + Delta-G solvation = -3702.239720 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.63524 -39.09898 -38.39039 -36.53174 -34.70603 -33.18805 -32.55792 -32.17247 -30.13260 -29.85859 -28.05473 -26.89410 -25.38714 -24.01242 -22.46527 -21.75728 -21.32404 -20.77736 -19.20080 -18.01348 -17.52161 -17.31041 -16.63538 -15.74311 -15.33138 -14.87917 -14.58320 -14.53044 -14.15150 -14.06033 -13.82773 -13.66146 -13.55159 -13.40365 -13.09985 -12.80525 -12.66909 -12.54605 -12.32726 -12.08420 -11.69985 -11.57873 -11.29133 -11.18740 -10.95647 -10.79184 -10.65097 -10.44421 -10.31383 -9.45314 -9.39918 -9.21166 -8.73291 -8.65946 -8.05243 -7.87149 -6.91766 -6.48131 -4.03425 1.01683 1.43045 1.54179 2.38255 2.65861 3.12948 3.15026 3.16750 3.17515 3.46870 3.90770 3.95762 4.65793 4.74325 4.82255 4.92647 5.10239 5.13636 5.16052 5.22545 5.28162 5.36319 5.48230 5.51849 5.55389 5.70109 5.73037 5.81801 5.84261 6.12547 6.20611 6.22795 6.33930 6.41349 6.47404 6.58359 6.59583 6.71650 6.74414 6.99664 7.09609 7.17232 7.29149 7.42272 7.47634 7.53479 7.88389 7.98219 8.36319 8.97434 9.68294 10.69473 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.003764 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.341389 B = 7437.770941 C = 9426.120683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.129 4.129 3 C -0.105 4.105 4 C -0.142 4.142 5 C -0.103 4.103 6 C -0.129 4.129 7 C 0.154 3.846 8 N -0.673 5.673 9 C 0.538 3.462 10 O -0.490 6.490 11 C -0.273 4.273 12 C 0.038 3.962 13 C -0.196 4.196 14 C 0.014 3.986 15 C -0.243 4.243 16 C 0.172 3.828 17 O -0.170 6.170 18 C -0.390 4.390 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.859 5.859 22 Si 0.941 3.059 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.210 4.210 27 C -0.042 4.042 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.158 0.842 35 H 0.405 0.595 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.125 0.875 40 H 0.272 0.728 41 H 0.116 0.884 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.672 8.652 4.465 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.131 4.131 3 C -0.124 4.124 4 C -0.161 4.161 5 C -0.122 4.122 6 C -0.149 4.149 7 C 0.059 3.941 8 N -0.317 5.317 9 C 0.330 3.670 10 O -0.365 6.365 11 C -0.294 4.294 12 C 0.018 3.982 13 C -0.197 4.197 14 C -0.005 4.005 15 C -0.262 4.262 16 C 0.117 3.883 17 O -0.072 6.072 18 C -0.466 4.466 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.493 5.493 22 Si 0.765 3.235 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.229 4.229 27 C -0.060 4.060 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.175 0.825 35 H 0.241 0.759 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.115 0.885 39 H 0.142 0.858 40 H 0.082 0.918 41 H 0.134 0.866 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.438 8.498 3.883 20.671 hybrid contribution -0.090 0.553 0.894 1.055 sum -18.528 9.051 4.778 21.167 Atomic orbital electron populations 1.20685 0.91359 1.02770 1.01975 1.19589 0.95756 0.91992 1.05796 1.20742 0.94169 0.96578 1.00900 1.21088 0.94180 0.98082 1.02726 1.21166 1.00234 0.92034 0.98766 1.21822 0.92653 1.00550 0.99868 1.17667 0.91578 0.84638 1.00251 1.43579 1.19850 1.07746 1.60556 1.18663 0.87033 0.83962 0.77390 1.90931 1.16291 1.83654 1.45609 1.22484 0.99906 0.92518 1.14489 1.22372 0.93937 0.95339 0.86523 1.18287 0.91202 1.10778 0.99426 1.20561 0.92723 0.91343 0.95862 1.20960 0.94698 1.09044 1.01534 1.19552 0.84683 0.91324 0.92726 1.83918 1.12146 1.70586 1.40567 1.21346 0.88860 1.44407 0.91965 0.88957 1.25321 0.95834 0.96763 0.98542 1.70007 1.09618 1.43331 1.26307 0.85782 0.78432 0.79477 0.79797 1.19402 1.20201 1.19385 1.20007 0.92670 1.09243 1.00975 1.20630 0.93491 0.96039 0.95889 0.91437 0.91332 0.91922 0.86200 0.86351 0.85768 0.82487 0.75916 0.85877 0.85811 0.88511 0.85773 0.91837 0.86609 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 9.45 36.01 0.34 -0.53 16 2 C -0.13 -1.47 5.90 -104.43 -0.62 -2.08 16 3 C -0.11 -1.16 9.70 -39.61 -0.38 -1.54 16 4 C -0.14 -1.69 10.04 -39.55 -0.40 -2.09 16 5 C -0.10 -1.46 10.04 -39.62 -0.40 -1.86 16 6 C -0.13 -2.04 8.79 -39.39 -0.35 -2.39 16 7 C 0.15 2.10 6.43 -83.73 -0.54 1.56 16 8 N -0.67 -8.08 4.93 -11.18 -0.06 -8.14 16 9 C 0.54 7.90 6.66 -13.06 -0.09 7.81 16 10 O -0.49 -9.27 9.11 5.16 0.05 -9.22 16 11 C -0.27 -3.29 9.90 -37.51 -0.37 -3.66 16 12 C 0.04 0.50 9.80 -37.19 -0.36 0.14 16 13 C -0.20 -3.50 4.54 -105.03 -0.48 -3.98 16 14 C 0.01 0.27 6.60 -39.15 -0.26 0.01 16 15 C -0.24 -5.56 9.11 -39.47 -0.36 -5.92 16 16 C 0.17 4.31 6.66 -38.88 -0.26 4.05 16 17 O -0.17 -4.95 9.74 0.74 0.01 -4.94 16 18 C -0.39 -11.04 9.44 30.91 0.29 -10.75 16 19 H 0.09 2.43 5.27 -52.49 -0.28 2.15 16 20 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 21 N -0.86 -25.30 13.67 55.48 0.76 -24.55 16 22 Si 0.94 20.67 29.55 -169.99 -5.02 15.65 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 C -0.21 -4.60 9.97 -39.46 -0.39 -4.99 16 27 C -0.04 -0.78 9.78 -39.14 -0.38 -1.16 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 30 H 0.06 0.46 7.02 -51.93 -0.36 0.09 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 34 H 0.16 2.90 5.55 -52.49 -0.29 2.61 16 35 H 0.41 3.43 7.45 -40.82 -0.30 3.12 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 37 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 38 H 0.10 1.76 7.01 -52.49 -0.37 1.39 16 39 H 0.12 2.86 5.69 -52.48 -0.30 2.56 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 42 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 355.56 15.07 5.36 5.36 Total: -1.00 -33.32 355.56 -8.84 -42.16 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -4.84 Total: 10.03 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -5.10 Total: -26.35 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.70 Total: -32.68 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.05 Total: -14.16 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.32 -8.84 -42.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229794247.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.570 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds