Wall clock time and date at job start Tue Mar 31 2020 14:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38123 * 120.03877 * 2 1 4 4 C 1.38265 * 120.07452 * 180.29412 * 3 2 1 5 5 C 1.38309 * 120.14317 * 359.72014 * 4 3 2 6 6 C 1.38074 * 120.07572 * 359.97438 * 5 4 3 7 7 C 1.38874 * 120.03553 * 179.71715 * 2 1 3 8 8 N 1.39817 * 120.07516 * 359.97438 * 7 2 1 9 9 C 1.34777 * 120.00089 * 153.49761 * 8 7 2 10 10 O 1.21734 * 119.99984 * 4.43006 * 9 8 7 11 11 C 1.46218 * 120.00078 * 184.43185 * 9 8 7 12 12 C 1.35043 * 119.99827 * 186.66221 * 11 9 8 13 13 C 1.46949 * 120.00081 * 11.44648 * 12 11 9 14 14 C 1.40023 * 120.10360 * 43.47012 * 13 12 11 15 15 C 1.37598 * 119.89737 * 179.97438 * 14 13 12 16 16 C 1.39175 * 120.10370 * 0.27156 * 15 14 13 17 17 O 1.35568 * 119.90043 * 179.72907 * 16 15 14 18 18 C 1.34783 * 116.99864 * 5.79467 * 17 16 15 19 19 H 1.07999 * 119.99679 * 5.32699 * 18 17 16 20 20 C 1.38719 * 119.99682 * 185.33032 * 18 17 16 21 21 N 1.31504 * 120.00236 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99860 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46898 * 60.00042 * 22 20 18 24 24 H 1.48495 * 109.47054 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46866 * 300.00293 * 22 20 18 26 26 C 1.39188 * 120.20053 * 359.44774 * 16 15 14 27 27 C 1.37597 * 120.09951 * 0.55396 * 26 16 15 28 28 H 1.08993 * 109.47412 * 270.28118 * 1 2 3 29 29 H 1.09007 * 109.47085 * 30.28340 * 1 2 3 30 30 H 1.09005 * 109.47222 * 150.27667 * 1 2 3 31 31 H 1.07999 * 119.96122 * 0.03632 * 3 2 1 32 32 H 1.07995 * 119.92750 * 179.73751 * 4 3 2 33 33 H 1.07997 * 119.95899 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.03927 * 180.02562 * 6 5 4 35 35 H 0.97002 * 120.00011 * 333.49948 * 8 7 2 36 36 H 1.07996 * 119.99633 * 6.65550 * 11 9 8 37 37 H 1.08003 * 119.99381 * 191.44844 * 12 11 9 38 38 H 1.08000 * 120.05373 * 359.95372 * 14 13 12 39 39 H 1.08004 * 119.94861 * 180.02562 * 15 14 13 40 40 H 0.97002 * 120.00169 * 179.97438 * 21 20 18 41 41 H 1.07997 * 119.94508 * 180.27480 * 26 16 15 42 42 H 1.07997 * 120.04697 * 179.74073 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1957 0.0000 4 6 3.5811 1.1966 -0.0061 5 6 4.2764 0.0010 -0.0065 6 6 3.5913 -1.1978 -0.0001 7 6 2.2021 -1.2022 0.0059 8 7 1.5054 -2.4144 0.0125 9 6 2.0749 -3.5219 -0.5029 10 8 3.2250 -3.4862 -0.9004 11 6 1.3115 -4.7663 -0.5846 12 6 1.9198 -5.9072 -0.9742 13 6 3.3850 -5.9620 -1.0730 14 6 4.1783 -5.3971 -0.0670 15 6 5.5498 -5.4512 -0.1635 16 6 6.1488 -6.0614 -1.2617 17 8 7.5004 -6.1075 -1.3553 18 6 8.2028 -5.6535 -0.2984 19 1 7.6891 -5.3558 0.6037 20 6 9.5856 -5.5685 -0.3695 21 7 10.2110 -5.9304 -1.4682 22 14 10.5591 -4.9385 1.0950 23 1 10.3134 -5.8164 2.2673 24 1 12.0072 -4.9445 0.7663 25 1 10.1304 -3.5532 1.4155 26 6 5.3642 -6.6294 -2.2613 27 6 3.9920 -6.5800 -2.1732 28 1 -0.3634 0.0050 1.0276 29 1 -0.3633 0.8875 -0.5183 30 1 -0.3634 -0.8925 -0.5095 31 1 1.6584 2.1310 0.0006 32 1 4.1192 2.1329 -0.0104 33 1 5.3563 0.0051 -0.0117 34 1 4.1349 -2.1311 0.0001 35 1 0.6120 -2.4583 0.3879 36 1 0.2612 -4.7728 -0.3333 37 1 1.3294 -6.7795 -1.2131 38 1 3.7145 -4.9193 0.7833 39 1 6.1626 -5.0161 0.6122 40 1 11.1779 -5.8706 -1.5181 41 1 5.8333 -7.1057 -3.1095 42 1 3.3841 -7.0173 -2.9514 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229794247.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:07 Heat of formation + Delta-G solvation = 1.911544 kcal Electronic energy + Delta-G solvation = -26092.129505 eV Core-core repulsion = 22389.000971 eV Total energy + Delta-G solvation = -3703.128534 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.75616 -40.71988 -39.65661 -38.16539 -35.83671 -34.66625 -33.98671 -33.45493 -31.80904 -30.98758 -29.50341 -27.75459 -27.33587 -25.23663 -23.77780 -23.33570 -22.55343 -21.91207 -20.38807 -19.89347 -19.06716 -18.44138 -18.06861 -16.82530 -16.61347 -16.30756 -16.14634 -16.08360 -15.56316 -15.29843 -15.25683 -15.02267 -14.75830 -14.56900 -14.32384 -14.13753 -14.00915 -13.89505 -13.56863 -13.25330 -13.04617 -12.96345 -12.65648 -12.44819 -12.32014 -12.24218 -12.16022 -12.13054 -11.40075 -11.26867 -10.96506 -10.52622 -10.40803 -9.68255 -9.63148 -8.94821 -8.58429 -8.51811 -6.18163 -0.15174 0.41151 0.47978 0.70809 1.12032 1.29811 1.42915 1.46613 2.14284 2.17955 2.35930 2.83775 2.89813 3.20220 3.49650 3.83116 3.96727 3.98601 4.02432 4.08674 4.17301 4.25318 4.40322 4.53309 4.53740 4.59495 4.68511 4.71776 4.83771 4.85300 5.02281 5.05495 5.07070 5.16547 5.27834 5.30941 5.35613 5.43669 5.51137 5.59574 5.64762 5.67641 5.71355 5.82991 5.99495 6.15093 6.23230 6.57376 6.92575 7.28883 7.73816 8.71334 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.003764 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.341389 B = 7437.770941 C = 9426.120683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.121 4.121 3 C -0.104 4.104 4 C -0.140 4.140 5 C -0.128 4.128 6 C -0.161 4.161 7 C 0.136 3.864 8 N -0.654 5.654 9 C 0.522 3.478 10 O -0.541 6.541 11 C -0.234 4.234 12 C 0.017 3.983 13 C -0.165 4.165 14 C 0.011 3.989 15 C -0.256 4.256 16 C 0.128 3.872 17 O -0.228 6.228 18 C -0.416 4.416 19 H 0.096 0.904 20 C -0.020 4.020 21 N -0.918 5.918 22 Si 1.017 2.983 23 H -0.255 1.255 24 H -0.266 1.266 25 H -0.261 1.261 26 C -0.222 4.222 27 C -0.043 4.043 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.156 0.844 32 H 0.142 0.858 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.426 0.574 36 H 0.181 0.819 37 H 0.176 0.824 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.274 0.726 41 H 0.114 0.886 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.620 10.201 5.604 28.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.123 4.123 3 C -0.123 4.123 4 C -0.159 4.159 5 C -0.147 4.147 6 C -0.181 4.181 7 C 0.041 3.959 8 N -0.299 5.299 9 C 0.315 3.685 10 O -0.420 6.420 11 C -0.255 4.255 12 C -0.002 4.002 13 C -0.166 4.166 14 C -0.007 4.007 15 C -0.276 4.276 16 C 0.077 3.923 17 O -0.134 6.134 18 C -0.492 4.492 19 H 0.113 0.887 20 C -0.218 4.218 21 N -0.555 5.555 22 Si 0.835 3.165 23 H -0.179 1.179 24 H -0.190 1.190 25 H -0.186 1.186 26 C -0.242 4.242 27 C -0.061 4.061 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.173 0.827 32 H 0.160 0.840 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.265 0.735 36 H 0.198 0.802 37 H 0.193 0.807 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.083 0.917 41 H 0.132 0.868 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -24.503 10.059 5.047 26.964 hybrid contribution 1.173 0.246 0.518 1.306 sum -23.330 10.305 5.565 26.105 Atomic orbital electron populations 1.20795 0.88164 1.04061 1.03643 1.20047 0.97967 0.90924 1.03406 1.21223 0.93785 0.98043 0.99219 1.21381 0.95156 0.97851 1.01502 1.21235 1.00188 0.92878 1.00417 1.21642 0.94254 0.99592 1.02619 1.17779 0.90840 0.86178 1.01145 1.43388 1.20367 1.06696 1.59486 1.19400 0.86718 0.85519 0.76898 1.90964 1.18682 1.84515 1.47846 1.22983 1.02084 0.90282 1.10107 1.22652 0.90948 0.98155 0.88486 1.18894 0.94364 1.06168 0.97155 1.20740 0.91440 0.91363 0.97193 1.20980 0.96290 1.09461 1.00827 1.20080 0.84046 0.93464 0.94716 1.83877 1.14002 1.73943 1.41575 1.21748 0.89748 1.45129 0.92564 0.88715 1.26594 0.96483 0.96748 1.01969 1.70148 1.09942 1.46394 1.29053 0.84690 0.76836 0.79064 0.75868 1.17914 1.18992 1.18592 1.20319 0.94373 1.09184 1.00293 1.21133 0.92182 0.95606 0.97131 0.89395 0.89698 0.91066 0.82651 0.84047 0.86707 0.86264 0.73474 0.80216 0.80685 0.87143 0.87588 0.91650 0.86819 0.82498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.45 71.24 0.67 -0.48 16 2 C -0.12 -2.35 5.90 -19.74 -0.12 -2.47 16 3 C -0.10 -1.96 9.70 22.25 0.22 -1.74 16 4 C -0.14 -3.17 10.04 22.29 0.22 -2.95 16 5 C -0.13 -3.81 10.04 22.25 0.22 -3.59 16 6 C -0.16 -5.34 8.79 22.40 0.20 -5.14 16 7 C 0.14 3.52 6.43 38.18 0.25 3.76 16 8 N -0.65 -13.71 4.93 -307.47 -1.52 -15.22 16 9 C 0.52 13.96 6.66 86.32 0.57 14.53 16 10 O -0.54 -20.61 9.11 -4.46 -0.04 -20.65 16 11 C -0.23 -4.29 9.90 23.61 0.23 -4.06 16 12 C 0.02 0.35 9.80 23.82 0.23 0.59 16 13 C -0.17 -5.57 4.54 -20.13 -0.09 -5.66 16 14 C 0.01 0.44 6.60 22.55 0.15 0.59 16 15 C -0.26 -12.69 9.11 22.34 0.20 -12.49 16 16 C 0.13 6.97 6.66 22.72 0.15 7.12 16 17 O -0.23 -14.66 9.74 -20.26 -0.20 -14.86 16 18 C -0.42 -25.86 9.44 67.93 0.64 -25.22 16 19 H 0.10 5.53 5.27 -2.91 -0.02 5.52 16 20 C -0.02 -1.20 5.49 84.86 0.47 -0.73 16 21 N -0.92 -58.47 13.67 21.62 0.30 -58.17 16 22 Si 1.02 45.12 29.55 68.60 2.03 47.14 16 23 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 26 C -0.22 -10.25 9.97 22.35 0.22 -10.03 16 27 C -0.04 -1.53 9.78 22.55 0.22 -1.30 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.68 8.09 -2.38 -0.02 0.66 16 30 H 0.07 0.65 7.02 -2.38 -0.02 0.63 16 31 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 32 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.11 3.41 8.06 -2.91 -0.02 3.39 16 34 H 0.12 4.86 5.55 -2.91 -0.02 4.85 16 35 H 0.43 5.09 7.45 -92.71 -0.69 4.40 16 36 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 37 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.11 4.04 7.01 -2.91 -0.02 4.02 16 39 H 0.11 5.47 5.69 -2.91 -0.02 5.45 16 40 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 41 H 0.11 5.13 8.06 -2.91 -0.02 5.10 16 42 H 0.16 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -85.67 355.56 5.61 -80.06 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.37 Total: 30.97 kcal Atomic # 6 Polarization: -53.94 SS G_CDS: 4.67 Total: -49.27 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -1.22 Total: -73.40 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.24 Total: -35.51 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -85.67 5.61 -80.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229794247.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.973 kcal (2) G-P(sol) polarization free energy of solvation -85.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds