Wall clock time and date at job start Tue Mar 31 2020 14:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38280 * 119.93109 * 2 1 4 4 C 1.38105 * 120.07896 * 180.02562 * 3 2 1 5 5 C 1.38906 * 119.92188 * 359.97438 * 4 3 2 6 6 N 1.39817 * 120.07309 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00010 * 147.19281 * 6 5 4 8 8 O 1.21731 * 119.99889 * 2.92321 * 7 6 5 9 9 C 1.46210 * 119.99846 * 182.93295 * 7 6 5 10 10 C 1.35045 * 119.99944 * 172.32177 * 9 7 6 11 11 C 1.46950 * 120.00168 * 348.79304 * 10 9 7 12 12 C 1.40032 * 120.10181 * 312.14061 * 11 10 9 13 13 C 1.37593 * 119.89676 * 179.71658 * 12 11 10 14 14 C 1.39175 * 120.10263 * 0.57890 * 13 12 11 15 15 O 1.35570 * 119.89720 * 179.69541 * 14 13 12 16 16 C 1.34783 * 116.99980 * 185.80656 * 15 14 13 17 17 H 1.07993 * 119.99624 * 354.89568 * 16 15 14 18 18 C 1.38718 * 119.99713 * 174.89751 * 16 15 14 19 19 N 1.31503 * 120.00564 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99806 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46902 * 89.99774 * 20 18 16 22 22 H 1.48493 * 109.47398 * 210.00141 * 20 18 16 23 23 H 1.48502 * 109.47177 * 330.00260 * 20 18 16 24 24 C 1.39176 * 120.20363 * 359.67276 * 14 13 12 25 25 C 1.37590 * 120.10077 * 0.04505 * 24 14 13 26 26 C 1.38902 * 119.85347 * 0.27550 * 5 4 3 27 27 C 1.38104 * 119.92622 * 359.47622 * 26 5 4 28 28 H 1.09003 * 109.47189 * 89.99547 * 1 2 3 29 29 H 1.08998 * 109.47887 * 209.99785 * 1 2 3 30 30 H 1.09003 * 109.47226 * 330.00128 * 1 2 3 31 31 H 1.08003 * 119.96135 * 359.97438 * 3 2 1 32 32 H 1.08000 * 120.04048 * 180.02562 * 4 3 2 33 33 H 0.96998 * 119.99965 * 327.19557 * 6 5 4 34 34 H 1.08000 * 120.00006 * 352.31929 * 9 7 6 35 35 H 1.07999 * 120.00184 * 168.51562 * 10 9 7 36 36 H 1.08005 * 120.04496 * 359.97438 * 12 11 10 37 37 H 1.08005 * 119.94434 * 180.25394 * 13 12 11 38 38 H 0.96996 * 120.00230 * 180.02562 * 19 18 16 39 39 H 1.07999 * 119.94967 * 180.02562 * 24 14 13 40 40 H 1.08000 * 120.05000 * 180.02562 * 25 24 14 41 41 H 1.08004 * 120.03619 * 179.69773 * 26 5 4 42 42 H 1.08001 * 119.96385 * 180.22845 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5779 1.2019 -0.0005 5 6 4.2739 -0.0002 -0.0005 6 7 5.6721 -0.0003 -0.0005 7 6 6.3459 -0.9813 0.6319 8 8 5.7384 -1.8959 1.1575 9 6 7.8066 -0.9470 0.6867 10 6 8.4749 -1.8398 1.4483 11 6 7.7442 -2.6804 2.4069 12 6 6.8100 -2.1044 3.2766 13 6 6.1240 -2.8963 4.1685 14 6 6.3661 -4.2660 4.2154 15 8 5.6923 -5.0414 5.1001 16 6 6.0567 -6.3366 5.1801 17 1 6.7953 -6.7327 4.4991 18 6 5.4830 -7.1605 6.1373 19 7 4.5840 -6.6780 6.9669 20 14 5.9875 -8.9558 6.2478 21 1 7.1364 -9.0906 7.1790 22 1 4.8456 -9.7608 6.7507 23 1 6.3817 -9.4430 4.9015 24 6 7.2975 -4.8422 3.3567 25 6 7.9841 -4.0591 2.4575 26 6 3.5778 -1.2022 -0.0058 27 6 2.1968 -1.1986 -0.0001 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3635 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6551 2.1327 -0.0004 32 1 4.1162 2.1383 -0.0001 33 1 6.1571 0.7058 -0.4556 34 1 8.3511 -0.2076 0.1182 35 1 9.5457 -1.9393 1.3496 36 1 6.6252 -1.0407 3.2443 37 1 5.4002 -2.4534 4.8367 38 1 4.1831 -7.2541 7.6365 39 1 7.4819 -5.9056 3.3964 40 1 8.7064 -4.5071 1.7912 41 1 4.1160 -2.1386 -0.0107 42 1 1.6550 -2.1328 -0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229844013.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:10 Heat of formation + Delta-G solvation = -4.834032 kcal Electronic energy + Delta-G solvation = -25673.883900 eV Core-core repulsion = 21970.462856 eV Total energy + Delta-G solvation = -3703.421044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.59558 -40.70577 -39.67382 -38.21170 -36.00264 -34.64406 -33.99068 -32.45623 -31.87937 -31.81758 -29.73199 -27.65216 -27.18022 -24.66742 -23.93854 -23.51360 -22.76731 -21.81526 -20.56846 -19.81605 -18.97081 -18.38766 -18.15599 -16.53107 -16.42651 -16.40444 -16.24567 -15.99783 -15.60054 -15.53125 -15.08484 -14.88830 -14.62636 -14.54415 -14.43761 -14.37516 -14.18935 -13.76139 -13.58677 -13.22349 -13.00967 -12.97370 -12.70861 -12.48945 -12.37283 -12.24076 -12.13853 -12.00844 -11.25291 -11.15266 -10.92753 -10.63122 -10.40472 -9.86107 -9.70408 -8.88540 -8.60585 -8.49591 -6.17090 -0.09438 0.41032 0.48097 0.68327 1.06608 1.32681 1.44245 1.51186 2.16259 2.22013 2.35169 2.84271 2.89628 3.19920 3.48470 3.84955 3.98350 4.03201 4.04465 4.12249 4.13878 4.14988 4.43185 4.50492 4.51641 4.57670 4.68704 4.74127 4.85028 4.87058 5.02701 5.06795 5.08938 5.15322 5.22159 5.23365 5.36083 5.41790 5.47487 5.61206 5.65003 5.70464 5.72092 5.79742 6.00909 6.14218 6.22425 6.59631 6.94221 7.32534 7.76357 8.73810 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012472 B = 0.003156 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.530335 B = 8869.956934 C =10594.216776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.114 4.114 3 C -0.104 4.104 4 C -0.141 4.141 5 C 0.130 3.870 6 N -0.659 5.659 7 C 0.523 3.477 8 O -0.545 6.545 9 C -0.227 4.227 10 C 0.011 3.989 11 C -0.153 4.153 12 C 0.000 4.000 13 C -0.217 4.217 14 C 0.126 3.874 15 O -0.232 6.232 16 C -0.416 4.416 17 H 0.103 0.897 18 C -0.024 4.024 19 N -0.921 5.921 20 Si 1.022 2.978 21 H -0.260 1.260 22 H -0.270 1.270 23 H -0.253 1.253 24 C -0.254 4.254 25 C -0.049 4.049 26 C -0.145 4.145 27 C -0.123 4.123 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.427 0.573 34 H 0.181 0.819 35 H 0.174 0.826 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.274 0.726 39 H 0.120 0.880 40 H 0.149 0.851 41 H 0.109 0.891 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.630 17.934 -18.783 26.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.114 4.114 3 C -0.122 4.122 4 C -0.161 4.161 5 C 0.035 3.965 6 N -0.305 5.305 7 C 0.315 3.685 8 O -0.423 6.423 9 C -0.247 4.247 10 C -0.008 4.008 11 C -0.154 4.154 12 C -0.018 4.018 13 C -0.236 4.236 14 C 0.075 3.925 15 O -0.139 6.139 16 C -0.492 4.492 17 H 0.120 0.880 18 C -0.221 4.221 19 N -0.559 5.559 20 Si 0.841 3.159 21 H -0.185 1.185 22 H -0.195 1.195 23 H -0.176 1.176 24 C -0.273 4.273 25 C -0.067 4.067 26 C -0.165 4.165 27 C -0.142 4.142 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.266 0.734 34 H 0.199 0.801 35 H 0.191 0.809 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.138 0.862 40 H 0.166 0.834 41 H 0.127 0.873 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.954 17.278 -18.084 25.184 hybrid contribution -0.162 -0.907 0.385 0.998 sum 2.792 16.371 -17.699 24.271 Atomic orbital electron populations 1.20797 0.89504 1.03284 1.03087 1.20237 0.97564 0.92843 1.00803 1.21194 0.93549 0.98265 0.99223 1.21203 0.94834 0.96591 1.03487 1.17908 0.83516 0.94075 1.00970 1.43368 1.04024 1.28844 1.54289 1.19345 0.90203 0.81494 0.77423 1.91018 1.70753 1.35176 1.45341 1.23022 0.90598 1.04552 1.06520 1.22629 1.00521 0.89094 0.88576 1.18871 1.01894 0.93802 1.00852 1.20653 0.91576 0.97965 0.91647 1.20175 1.06523 0.91002 1.05893 1.19989 0.91245 0.91442 0.89810 1.83878 1.54201 1.22191 1.53583 1.21891 1.25630 0.82776 1.18936 0.87997 1.26682 0.95715 1.05641 0.94084 1.70175 1.27545 1.38780 1.19379 0.84550 0.78334 0.73295 0.79759 1.18459 1.19469 1.17634 1.21101 1.03370 1.00810 1.02038 1.21169 0.97220 0.92739 0.95532 1.21287 0.94864 0.98061 1.02318 1.21118 0.93621 0.98697 1.00758 0.90008 0.92159 0.90077 0.82750 0.82582 0.73363 0.80143 0.80860 0.86369 0.88364 0.91744 0.86232 0.83364 0.87264 0.86371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 10.01 71.23 0.71 -1.09 16 2 C -0.11 -2.52 5.88 -19.84 -0.12 -2.64 16 3 C -0.10 -1.92 9.69 22.25 0.22 -1.70 16 4 C -0.14 -2.65 9.96 22.40 0.22 -2.43 16 5 C 0.13 3.23 6.33 38.19 0.24 3.47 16 6 N -0.66 -13.26 5.34 -307.48 -1.64 -14.90 16 7 C 0.52 13.74 6.75 86.31 0.58 14.32 16 8 O -0.54 -20.58 9.88 -4.45 -0.04 -20.62 16 9 C -0.23 -4.10 9.92 23.61 0.23 -3.87 16 10 C 0.01 0.23 9.78 23.82 0.23 0.47 16 11 C -0.15 -5.22 4.34 -20.13 -0.09 -5.31 16 12 C 0.00 -0.01 6.79 22.55 0.15 0.15 16 13 C -0.22 -10.71 9.97 22.34 0.22 -10.48 16 14 C 0.13 6.92 6.66 22.72 0.15 7.07 16 15 O -0.23 -15.04 9.74 -20.28 -0.20 -15.24 16 16 C -0.42 -25.58 9.48 67.93 0.64 -24.94 16 17 H 0.10 5.74 5.18 -2.91 -0.02 5.73 16 18 C -0.02 -1.41 5.49 84.86 0.47 -0.94 16 19 N -0.92 -58.78 13.67 21.62 0.30 -58.49 16 20 Si 1.02 44.40 29.55 68.60 2.03 46.43 16 21 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.25 -10.21 7.11 99.48 0.71 -9.51 16 24 C -0.25 -12.02 9.14 22.34 0.20 -11.81 16 25 C -0.05 -1.81 9.78 22.55 0.22 -1.58 16 26 C -0.14 -4.52 8.69 22.40 0.19 -4.32 16 27 C -0.12 -3.46 9.69 22.25 0.22 -3.24 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.05 8.08 -2.39 -0.02 1.03 16 30 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 31 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 33 H 0.43 4.57 8.79 -92.71 -0.82 3.75 16 34 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.12 4.19 7.44 -2.91 -0.02 4.17 16 37 H 0.10 4.96 8.06 -2.91 -0.02 4.93 16 38 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 39 H 0.12 5.67 5.62 -2.91 -0.02 5.65 16 40 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 41 H 0.11 4.08 6.12 -2.91 -0.02 4.06 16 42 H 0.12 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -85.99 360.04 5.39 -80.60 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.24 Total: 31.12 kcal Atomic # 6 Polarization: -53.61 SS G_CDS: 4.71 Total: -48.89 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -1.34 Total: -73.39 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.24 Total: -35.86 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -85.99 5.39 -80.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229844013.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.763 kcal (2) G-P(sol) polarization free energy of solvation -85.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds