Wall clock time and date at job start Tue Mar 31 2020 13:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35983 * 116.99537 * 179.97438 * 11 10 9 13 13 C 1.38781 * 120.49767 * 0.02562 * 12 11 10 14 14 C 1.38794 * 118.44752 * 179.97438 * 13 12 11 15 15 C 1.38075 * 119.35183 * 359.97438 * 14 13 12 16 16 N 1.31963 * 120.95403 * 359.97438 * 15 14 13 17 17 C 1.32266 * 121.69068 * 359.72759 * 16 15 14 18 18 N 1.39594 * 119.72727 * 180.26509 * 17 16 15 19 19 C 1.34774 * 119.99891 * 0.26464 * 18 17 16 20 20 O 1.21589 * 119.99929 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00006 * 179.97438 * 19 18 17 22 22 C 1.46496 * 119.99986 * 180.02562 * 21 19 18 23 23 C 1.53004 * 109.46728 * 179.97438 * 22 21 19 24 24 C 1.50706 * 109.46607 * 179.97438 * 23 22 21 25 25 O 1.20825 * 120.00388 * 359.97438 * 24 23 22 26 26 O 1.34231 * 119.99662 * 180.02562 * 24 23 22 27 27 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 29 29 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 30 30 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 31 31 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 32 32 H 1.07993 * 120.77611 * 359.94975 * 13 12 11 33 33 H 1.07997 * 120.32400 * 180.02562 * 14 13 12 34 34 H 1.08000 * 119.51826 * 179.97438 * 15 14 13 35 35 H 0.97000 * 119.99898 * 180.26996 * 18 17 16 36 36 H 0.97000 * 119.99782 * 0.02562 * 21 19 18 37 37 H 1.08998 * 109.47109 * 299.99543 * 22 21 19 38 38 H 1.09003 * 109.47550 * 60.00165 * 22 21 19 39 39 H 1.08989 * 109.47533 * 299.99591 * 23 22 21 40 40 H 1.09002 * 109.47337 * 60.00188 * 23 22 21 41 41 H 0.96706 * 117.00081 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.2716 -6.0401 -0.0004 13 6 3.6581 -5.9794 -0.0009 14 6 4.3720 -7.1696 -0.0008 15 6 3.6880 -8.3691 0.0003 16 7 2.3687 -8.3981 0.0018 17 6 1.6493 -7.2882 0.0076 18 7 0.2556 -7.3667 0.0145 19 6 -0.3515 -8.5700 0.0207 20 8 0.3147 -9.5871 0.0206 21 7 -1.6971 -8.6458 0.0279 22 6 -2.3570 -9.9537 0.0351 23 6 -3.8746 -9.7591 0.0431 24 6 -4.5535 -11.1046 0.0499 25 8 -3.8915 -12.1153 0.0480 26 8 -5.8936 -11.1800 0.0570 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5568 -0.8902 29 1 0.6248 -2.5571 0.8897 30 1 2.8721 -3.6043 -0.8905 31 1 2.8721 -3.6042 0.8895 32 1 4.1696 -5.0282 -0.0017 33 1 5.4519 -7.1577 -0.0007 34 1 4.2408 -9.2969 0.0000 35 1 -0.2759 -6.5553 0.0149 36 1 -2.2286 -7.8343 0.0283 37 1 -2.0666 -10.5121 -0.8548 38 1 -2.0574 -10.5070 0.9252 39 1 -4.1647 -9.2009 0.9331 40 1 -4.1747 -9.2056 -0.8467 41 1 -6.2835 -12.0650 0.0616 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263053776.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:57 Heat of formation + Delta-G solvation = -116.039354 kcal Electronic energy + Delta-G solvation = -25874.892476 eV Core-core repulsion = 21755.799944 eV Total energy + Delta-G solvation = -4119.092532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.95290 -40.66205 -39.51820 -37.79895 -36.70190 -35.58524 -34.65213 -33.48626 -31.86450 -31.33878 -30.41394 -28.94166 -25.52303 -25.22853 -23.45048 -22.74461 -21.50847 -21.25774 -20.58664 -18.83606 -18.50188 -18.07561 -17.46542 -16.89623 -16.79234 -16.18014 -15.96814 -15.88069 -15.38287 -15.25414 -14.63013 -14.48551 -14.35625 -14.13361 -13.91184 -13.55260 -13.46732 -12.82166 -12.41691 -12.36113 -12.13321 -12.00605 -11.94443 -11.89129 -11.08462 -11.06597 -11.00336 -10.70614 -10.69203 -10.41319 -10.05383 -9.79424 -9.43021 -9.31876 -9.12950 -9.06491 -8.53783 -7.62801 -6.19755 -4.24504 1.28398 1.47960 1.75229 2.14026 2.79901 3.19902 3.21449 3.27761 3.29904 3.53770 3.94055 4.07112 4.14236 4.32601 4.51979 4.68603 4.79149 4.97800 4.99834 5.09455 5.17300 5.26759 5.44821 5.49470 5.59168 5.86114 5.89847 6.03992 6.06953 6.19215 6.21618 6.37609 6.53613 6.56614 6.80825 7.34204 7.42627 7.51023 7.61548 7.70074 7.86190 8.12891 8.25382 8.60165 8.80752 9.40533 10.91721 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.002437 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.246578 B =11485.236793 C =13849.416859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.317 6.317 12 C 0.065 3.935 13 C -0.146 4.146 14 C -0.163 4.163 15 C 0.077 3.923 16 N -0.442 5.442 17 C 0.346 3.654 18 N -0.660 5.660 19 C 0.698 3.302 20 O -0.531 6.531 21 N -0.748 5.748 22 C 0.151 3.849 23 C -0.128 4.128 24 C 0.485 3.515 25 O -0.509 6.509 26 O -0.517 6.517 27 H 0.264 0.736 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.156 0.844 35 H 0.421 0.579 36 H 0.399 0.601 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.700 -17.833 0.086 18.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.008 4.008 11 O -0.229 6.229 12 C 0.013 3.987 13 C -0.173 4.173 14 C -0.184 4.184 15 C -0.080 4.080 16 N -0.156 5.156 17 C 0.112 3.888 18 N -0.310 5.310 19 C 0.397 3.603 20 O -0.402 6.402 21 N -0.407 5.407 22 C 0.027 3.973 23 C -0.166 4.166 24 C 0.327 3.673 25 O -0.397 6.397 26 O -0.329 6.329 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.163 0.837 33 H 0.152 0.848 34 H 0.174 0.826 35 H 0.258 0.742 36 H 0.233 0.767 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -5.601 -19.359 0.087 20.153 hybrid contribution 0.272 2.145 -0.009 2.162 sum -5.329 -17.214 0.078 18.020 Atomic orbital electron populations 1.69961 1.06102 1.27082 1.49596 1.24980 0.94922 0.99422 0.94799 0.86481 0.79756 0.82858 0.78272 1.20461 1.21022 1.19739 1.20952 0.93085 0.90139 1.52427 0.92325 1.19122 0.94135 0.88938 0.98837 1.23387 0.97237 0.80318 0.99846 1.86093 1.36231 1.12891 1.87723 1.19530 0.91117 0.86948 1.01073 1.21588 0.92162 1.00344 1.03221 1.21889 1.01182 0.92535 1.02786 1.22416 0.88769 0.97883 0.98907 1.67623 1.07776 1.26806 1.13444 1.17471 0.83833 0.86908 1.00542 1.42454 1.04095 1.08848 1.75612 1.15851 0.81743 0.83912 0.78766 1.91054 1.62916 1.32975 1.53244 1.44988 1.05014 1.09208 1.81471 1.20858 0.87982 0.84076 1.04405 1.21470 0.95076 0.92996 1.07075 1.23070 0.80412 0.91976 0.71863 1.90794 1.65628 1.38116 1.45130 1.84518 1.22883 1.39921 1.85609 0.92648 0.95375 0.95377 0.92947 0.92950 0.83747 0.84814 0.82637 0.74201 0.76731 0.90352 0.90359 0.86602 0.86606 0.72759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.53 -13.94 9.11 -34.44 -0.31 -14.25 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 10 C 0.07 1.28 4.70 37.16 0.17 1.46 16 11 O -0.32 -5.71 9.39 -19.69 -0.18 -5.89 16 12 C 0.07 1.07 6.72 -38.92 -0.26 0.81 16 13 C -0.15 -2.12 9.14 -39.17 -0.36 -2.48 16 14 C -0.16 -2.03 10.10 -39.44 -0.40 -2.43 16 15 C 0.08 1.06 11.17 -17.56 -0.20 0.87 16 16 N -0.44 -7.54 7.87 -12.22 -0.10 -7.64 16 17 C 0.35 5.76 7.45 -154.43 -1.15 4.61 16 18 N -0.66 -9.54 5.40 -15.67 -0.08 -9.62 16 19 C 0.70 10.13 8.53 -86.92 -0.74 9.39 16 20 O -0.53 -9.83 14.59 5.29 0.08 -9.76 16 21 N -0.75 -7.28 5.56 -65.23 -0.36 -7.64 16 22 C 0.15 1.37 4.96 -4.04 -0.02 1.35 16 23 C -0.13 -0.69 5.93 -27.88 -0.17 -0.86 16 24 C 0.49 3.56 8.33 36.01 0.30 3.86 16 25 O -0.51 -5.68 16.74 -18.75 -0.31 -5.99 16 26 O -0.52 -2.68 13.42 -39.26 -0.53 -3.20 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 31 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 32 H 0.14 1.93 6.44 -52.49 -0.34 1.59 16 33 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.16 1.70 8.06 -52.49 -0.42 1.27 16 35 H 0.42 5.21 8.06 -40.82 -0.33 4.88 16 36 H 0.40 2.61 8.49 -40.82 -0.35 2.26 16 37 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 38 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 39 H 0.12 0.42 8.14 -51.94 -0.42 0.00 16 40 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.41 0.57 9.10 45.56 0.41 0.99 16 LS Contribution 362.47 15.07 5.46 5.46 Total: -1.00 -36.36 362.47 -8.01 -44.37 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -4.32 Total: 4.59 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -3.38 Total: 4.39 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.19 Total: -49.43 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.95 Total: -24.85 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.36 -8.01 -44.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263053776.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.669 kcal (2) G-P(sol) polarization free energy of solvation -36.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds