Wall clock time and date at job start Tue Mar 31 2020 13:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35983 * 116.99537 * 179.97438 * 11 10 9 13 13 C 1.38781 * 120.49767 * 0.02562 * 12 11 10 14 14 C 1.38794 * 118.44752 * 179.97438 * 13 12 11 15 15 C 1.38075 * 119.35183 * 359.97438 * 14 13 12 16 16 N 1.31963 * 120.95403 * 359.97438 * 15 14 13 17 17 C 1.32266 * 121.69068 * 359.72759 * 16 15 14 18 18 N 1.39594 * 119.72727 * 180.26509 * 17 16 15 19 19 C 1.34774 * 119.99891 * 0.26464 * 18 17 16 20 20 O 1.21589 * 119.99929 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00006 * 179.97438 * 19 18 17 22 22 C 1.46496 * 119.99986 * 180.02562 * 21 19 18 23 23 C 1.53004 * 109.46728 * 179.97438 * 22 21 19 24 24 C 1.50706 * 109.46607 * 179.97438 * 23 22 21 25 25 O 1.20825 * 120.00388 * 359.97438 * 24 23 22 26 26 O 1.34231 * 119.99662 * 180.02562 * 24 23 22 27 27 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 29 29 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 30 30 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 31 31 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 32 32 H 1.07993 * 120.77611 * 359.94975 * 13 12 11 33 33 H 1.07997 * 120.32400 * 180.02562 * 14 13 12 34 34 H 1.08000 * 119.51826 * 179.97438 * 15 14 13 35 35 H 0.97000 * 119.99898 * 180.26996 * 18 17 16 36 36 H 0.97000 * 119.99782 * 0.02562 * 21 19 18 37 37 H 1.08998 * 109.47109 * 299.99543 * 22 21 19 38 38 H 1.09003 * 109.47550 * 60.00165 * 22 21 19 39 39 H 1.08989 * 109.47533 * 299.99591 * 23 22 21 40 40 H 1.09002 * 109.47337 * 60.00188 * 23 22 21 41 41 H 0.96706 * 117.00081 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.2716 -6.0401 -0.0004 13 6 3.6581 -5.9794 -0.0009 14 6 4.3720 -7.1696 -0.0008 15 6 3.6880 -8.3691 0.0003 16 7 2.3687 -8.3981 0.0018 17 6 1.6493 -7.2882 0.0076 18 7 0.2556 -7.3667 0.0145 19 6 -0.3515 -8.5700 0.0207 20 8 0.3147 -9.5871 0.0206 21 7 -1.6971 -8.6458 0.0279 22 6 -2.3570 -9.9537 0.0351 23 6 -3.8746 -9.7591 0.0431 24 6 -4.5535 -11.1046 0.0499 25 8 -3.8915 -12.1153 0.0480 26 8 -5.8936 -11.1800 0.0570 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5568 -0.8902 29 1 0.6248 -2.5571 0.8897 30 1 2.8721 -3.6043 -0.8905 31 1 2.8721 -3.6042 0.8895 32 1 4.1696 -5.0282 -0.0017 33 1 5.4519 -7.1577 -0.0007 34 1 4.2408 -9.2969 0.0000 35 1 -0.2759 -6.5553 0.0149 36 1 -2.2286 -7.8343 0.0283 37 1 -2.0666 -10.5121 -0.8548 38 1 -2.0574 -10.5070 0.9252 39 1 -4.1647 -9.2009 0.9331 40 1 -4.1747 -9.2056 -0.8467 41 1 -6.2835 -12.0650 0.0616 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263053776.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:56 Heat of formation + Delta-G solvation = -143.389026 kcal Electronic energy + Delta-G solvation = -25876.078447 eV Core-core repulsion = 21755.799944 eV Total energy + Delta-G solvation = -4120.278503 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.07859 -41.31683 -40.63869 -39.10733 -37.27733 -36.45963 -35.84933 -35.41997 -32.92425 -32.55405 -31.83217 -30.14337 -27.14598 -26.16938 -24.75145 -23.88758 -22.77603 -22.12365 -21.80030 -19.93238 -19.29952 -19.12217 -18.73870 -18.00935 -17.55843 -17.45590 -17.16891 -17.12455 -16.51218 -16.47243 -16.19582 -15.51903 -15.29460 -15.22957 -15.09159 -14.60480 -14.33697 -14.17708 -14.07392 -13.60658 -13.26900 -12.99185 -12.78511 -12.73661 -12.71026 -12.52305 -12.42488 -11.85591 -11.76285 -11.68598 -11.63369 -11.56598 -11.38561 -10.58924 -10.42985 -10.23581 -10.16003 -8.80743 -8.24233 -6.36168 0.16642 0.32598 1.18985 1.26826 1.44014 1.44576 1.55440 2.07444 2.13621 2.17321 2.45935 2.93264 3.04209 3.11237 3.52243 3.61545 3.89044 4.00600 4.01117 4.16098 4.32816 4.33015 4.36955 4.49880 4.56120 4.76583 4.77678 4.82810 4.98913 5.16170 5.29049 5.31673 5.33896 5.53463 5.53578 5.62049 5.73050 5.83420 6.10415 6.36742 6.71637 6.78776 6.97271 7.17335 7.33715 7.51513 8.88344 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.002437 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.246578 B =11485.236793 C =13849.416859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.070 0.930 9 C 0.030 3.970 10 C 0.083 3.917 11 O -0.327 6.327 12 C 0.042 3.958 13 C -0.147 4.147 14 C -0.147 4.147 15 C 0.073 3.927 16 N -0.475 5.475 17 C 0.328 3.672 18 N -0.658 5.658 19 C 0.694 3.306 20 O -0.576 6.576 21 N -0.727 5.727 22 C 0.153 3.847 23 C -0.117 4.117 24 C 0.491 3.509 25 O -0.556 6.556 26 O -0.510 6.510 27 H 0.266 0.734 28 H 0.003 0.997 29 H 0.003 0.997 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.158 0.842 33 H 0.175 0.825 34 H 0.184 0.816 35 H 0.427 0.573 36 H 0.417 0.583 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.610 -17.179 0.092 17.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.582 4.582 8 H 0.088 0.912 9 C -0.007 4.007 10 C 0.009 3.991 11 O -0.241 6.241 12 C -0.009 4.009 13 C -0.174 4.174 14 C -0.168 4.168 15 C -0.083 4.083 16 N -0.190 5.190 17 C 0.095 3.905 18 N -0.308 5.308 19 C 0.393 3.607 20 O -0.450 6.450 21 N -0.386 5.386 22 C 0.029 3.971 23 C -0.154 4.154 24 C 0.335 3.665 25 O -0.447 6.447 26 O -0.324 6.324 27 H 0.075 0.925 28 H 0.021 0.979 29 H 0.021 0.979 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.175 0.825 33 H 0.193 0.807 34 H 0.201 0.799 35 H 0.266 0.734 36 H 0.254 0.746 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -4.574 -18.689 0.092 19.241 hybrid contribution -0.083 1.818 -0.011 1.820 sum -4.656 -16.872 0.081 17.503 Atomic orbital electron populations 1.70091 1.07826 1.28085 1.50785 1.25937 0.95768 1.03357 0.94395 0.85385 0.78682 0.78104 0.78518 1.19786 1.20945 1.18437 1.21408 0.93872 0.91104 1.51773 0.91158 1.18941 0.94517 0.90895 0.96353 1.22956 0.95636 0.79644 1.00880 1.86020 1.36530 1.12935 1.88586 1.19651 0.92076 0.86041 1.03148 1.21891 0.91402 1.01795 1.02272 1.22264 1.03042 0.91051 1.00403 1.23033 0.88065 0.99767 0.97454 1.67672 1.09445 1.27281 1.14578 1.17671 0.84610 0.87003 1.01200 1.42448 1.03836 1.09131 1.75414 1.16077 0.82882 0.83282 0.78454 1.91011 1.64288 1.34303 1.55414 1.44803 1.03538 1.10426 1.79812 1.20796 0.90567 0.83199 1.02558 1.21424 0.91866 0.92558 1.09587 1.23332 0.80806 0.91901 0.70487 1.90788 1.66648 1.39756 1.47519 1.84482 1.21627 1.41411 1.84860 0.92542 0.97905 0.97898 0.91817 0.91841 0.82464 0.80748 0.79925 0.73429 0.74595 0.92313 0.92315 0.83977 0.83983 0.70835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.50 13.29 21.45 0.28 -53.21 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.97 41.47 29.54 68.60 2.03 43.50 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 7 C -0.54 -28.58 9.11 25.60 0.23 -28.35 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 9 C 0.03 1.49 5.34 29.85 0.16 1.65 16 10 C 0.08 3.18 4.70 71.98 0.34 3.52 16 11 O -0.33 -11.83 9.39 -93.36 -0.88 -12.70 16 12 C 0.04 1.36 6.72 22.70 0.15 1.51 16 13 C -0.15 -3.95 9.14 22.53 0.21 -3.75 16 14 C -0.15 -3.23 10.10 22.36 0.23 -3.01 16 15 C 0.07 1.90 11.17 84.63 0.95 2.84 16 16 N -0.47 -16.11 7.87 -192.58 -1.52 -17.62 16 17 C 0.33 10.98 7.45 132.98 0.99 11.97 16 18 N -0.66 -19.40 5.40 -321.76 -1.74 -21.14 16 19 C 0.69 20.63 8.53 179.06 1.53 22.16 16 20 O -0.58 -22.10 14.59 -4.00 -0.06 -22.16 16 21 N -0.73 -14.03 5.56 -478.54 -2.66 -16.69 16 22 C 0.15 2.81 4.96 86.38 0.43 3.24 16 23 C -0.12 -1.08 5.93 29.85 0.18 -0.90 16 24 C 0.49 6.80 8.33 71.24 0.59 7.39 16 25 O -0.56 -12.71 16.74 21.97 0.37 -12.34 16 26 O -0.51 -4.42 13.42 -51.43 -0.69 -5.11 16 27 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.06 2.27 7.70 -2.39 -0.02 2.26 16 31 H 0.06 2.27 7.70 -2.39 -0.02 2.25 16 32 H 0.16 3.77 6.44 -2.91 -0.02 3.75 16 33 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 34 H 0.18 3.53 8.06 -2.91 -0.02 3.50 16 35 H 0.43 10.85 8.06 -92.71 -0.75 10.10 16 36 H 0.42 4.99 8.49 -92.71 -0.79 4.21 16 37 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 38 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 39 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.14 0.64 8.14 -2.39 -0.02 0.63 16 41 H 0.43 0.59 9.10 -74.05 -0.67 -0.08 16 Total: -1.00 -81.26 362.47 0.48 -80.78 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -1.10 Total: 17.74 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 6.44 Total: 18.96 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -5.63 Total: -108.66 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: -1.26 Total: -52.32 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -81.26 0.48 -80.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263053776.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.610 kcal (2) G-P(sol) polarization free energy of solvation -81.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds