Wall clock time and date at job start Tue Mar 31 2020 14:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.32635 * 124.64828 * 2 1 4 4 C 1.44623 * 113.10444 * 179.97438 * 3 2 1 5 5 C 1.46360 * 123.53151 * 180.02562 * 4 3 2 6 6 O 1.21352 * 120.00023 * 180.02562 * 5 4 3 7 7 C 1.50701 * 119.99846 * 0.02562 * 5 4 3 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 5 10 10 O 1.21288 * 120.00038 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00369 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99736 * 359.97438 * 11 9 8 13 13 C 1.46505 * 120.00115 * 180.02562 * 11 9 8 14 14 H 1.08994 * 109.46996 * 359.97438 * 13 11 9 15 15 C 1.52998 * 109.46812 * 239.99682 * 13 11 9 16 16 C 1.50702 * 109.46867 * 120.00190 * 13 11 9 17 17 H 1.07997 * 120.00285 * 359.97438 * 16 13 11 18 18 C 1.37876 * 119.99489 * 180.02562 * 16 13 11 19 19 N 1.31517 * 120.00091 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99822 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.46746 * 89.99793 * 20 18 16 22 22 H 1.48499 * 109.46820 * 209.99817 * 20 18 16 23 23 H 1.48497 * 109.46911 * 329.99865 * 20 18 16 24 24 C 1.36487 * 112.93965 * 0.26499 * 4 3 2 25 25 C 1.50697 * 124.61955 * 179.72919 * 24 4 3 26 26 S 1.70443 * 110.76110 * 359.59325 * 24 4 3 27 27 H 1.08998 * 109.46787 * 89.99939 * 1 2 3 28 28 H 1.08997 * 109.46758 * 210.00157 * 1 2 3 29 29 H 1.09000 * 109.46974 * 329.99834 * 1 2 3 30 30 H 1.07994 * 123.44613 * 359.94298 * 3 2 1 31 31 H 1.09002 * 109.47060 * 299.99944 * 7 5 4 32 32 H 1.09001 * 109.47380 * 60.00031 * 7 5 4 33 33 H 1.09002 * 109.47153 * 299.99998 * 8 7 5 34 34 H 1.08998 * 109.47533 * 59.99628 * 8 7 5 35 35 H 1.08996 * 109.46784 * 90.00263 * 12 11 9 36 36 H 1.09003 * 109.47146 * 209.99886 * 12 11 9 37 37 H 1.08994 * 109.47096 * 330.00470 * 12 11 9 38 38 H 1.08994 * 109.47543 * 299.99914 * 15 13 11 39 39 H 1.09004 * 109.47151 * 60.00167 * 15 13 11 40 40 H 1.08996 * 109.46816 * 179.97438 * 15 13 11 41 41 H 0.96998 * 119.99944 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.46968 * 90.00436 * 25 24 4 43 43 H 1.09006 * 109.47239 * 210.00004 * 25 24 4 44 44 H 1.08996 * 109.47303 * 330.00363 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2612 1.0911 0.0000 4 6 3.6781 0.8017 0.0006 5 6 4.7144 1.8353 0.0013 6 8 5.8862 1.5197 0.0013 7 6 4.3263 3.2914 0.0019 8 6 5.5887 4.1558 0.0032 9 6 5.2006 5.6119 0.0032 10 8 4.0295 5.9274 0.0028 11 7 6.1548 6.5637 0.0037 12 6 7.5694 6.1827 0.0048 13 6 5.7775 7.9793 0.0043 14 1 4.6909 8.0657 0.0038 15 6 6.3432 8.6584 -1.2445 16 6 6.3345 8.6471 1.2352 17 1 6.9114 8.0743 1.9460 18 6 6.1066 9.9892 1.4541 19 7 5.4035 10.6866 0.5887 20 14 6.7964 10.8168 2.9801 21 1 8.1509 11.3492 2.6849 22 1 5.9034 11.9322 3.3847 23 1 6.8832 9.8270 4.0837 24 6 3.9478 -0.5362 -0.0048 25 6 5.3327 -1.1304 -0.0114 26 16 2.5049 -1.4434 0.0008 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.8583 2.0931 -0.0009 31 1 3.7363 3.5106 -0.8880 32 1 3.7360 3.5098 0.8919 33 1 6.1783 3.9365 0.8934 34 1 6.1793 3.9376 -0.8865 35 1 7.9209 6.0881 -1.0226 36 1 8.1514 6.9477 0.5189 37 1 7.6884 5.2289 0.5188 38 1 7.4297 8.5721 -1.2445 39 1 5.9404 8.1754 -2.1348 40 1 6.0621 9.7115 -1.2443 41 1 5.2435 11.6308 0.7426 42 1 5.6699 -1.2772 1.0147 43 1 5.3139 -2.0899 -0.5284 44 1 6.0158 -0.4541 -0.5252 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264020186.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:48 Heat of formation + Delta-G solvation = -57.892721 kcal Electronic energy + Delta-G solvation = -24524.621649 eV Core-core repulsion = 20954.343758 eV Total energy + Delta-G solvation = -3570.277890 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.05827 -38.91365 -37.28443 -35.35291 -33.38384 -32.99709 -32.44344 -29.93267 -29.26320 -26.75354 -25.98943 -25.21546 -24.91826 -23.10131 -20.91677 -20.38261 -18.64768 -18.15381 -17.29818 -16.61601 -16.20936 -15.87402 -15.76270 -15.12618 -14.77244 -14.45910 -14.17473 -14.06446 -14.01379 -13.57583 -13.28075 -13.20519 -12.95916 -12.62990 -12.43568 -12.27657 -12.06863 -11.94510 -11.83404 -11.79597 -11.52642 -11.35336 -11.13127 -11.07624 -10.97070 -10.78069 -10.65724 -10.24226 -10.15378 -9.58543 -9.15925 -8.88985 -8.86881 -8.68282 -8.41097 -7.54942 -6.05936 -4.13787 0.45259 1.19579 1.54853 1.63031 2.90234 3.27130 3.34001 3.36606 3.44497 3.84311 4.25762 4.38393 4.43683 4.64220 4.90939 4.95424 5.00762 5.21310 5.24465 5.26587 5.27955 5.31081 5.40007 5.42620 5.59981 5.71377 5.75570 5.83482 5.90864 6.01440 6.03129 6.10614 6.12937 6.16137 6.42928 6.78047 6.86443 7.09535 7.45622 7.50556 7.56853 7.74026 8.03946 8.22386 8.57296 8.85138 9.09231 9.52736 10.99366 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.022014 B = 0.002408 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.583721 B =11627.282923 C =12136.325568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.206 4.206 3 C -0.097 4.097 4 C -0.198 4.198 5 C 0.418 3.582 6 O -0.458 6.458 7 C -0.144 4.144 8 C -0.130 4.130 9 C 0.503 3.497 10 O -0.558 6.558 11 N -0.593 5.593 12 C 0.083 3.917 13 C 0.257 3.743 14 H 0.063 0.937 15 C -0.146 4.146 16 C -0.525 4.525 17 H 0.059 0.941 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.143 4.143 25 C -0.096 4.096 26 S 0.168 5.832 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.155 0.845 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.029 0.971 39 H 0.010 0.990 40 H 0.093 0.907 41 H 0.263 0.737 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.536 -24.166 -2.571 24.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.322 4.322 3 C -0.125 4.125 4 C -0.213 4.213 5 C 0.295 3.705 6 O -0.335 6.335 7 C -0.182 4.182 8 C -0.170 4.170 9 C 0.290 3.710 10 O -0.438 6.438 11 N -0.324 5.324 12 C -0.061 4.061 13 C 0.157 3.843 14 H 0.081 0.919 15 C -0.204 4.204 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.262 4.262 25 C -0.155 4.155 26 S 0.434 5.566 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.173 0.827 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.029 0.971 40 H 0.111 0.889 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.932 -25.476 -2.599 26.079 hybrid contribution 0.761 2.103 0.828 2.385 sum -4.171 -23.373 -1.771 23.808 Atomic orbital electron populations 1.20350 0.87429 1.03348 1.02934 1.24254 1.00409 0.95861 1.11716 1.21267 0.90841 0.99817 1.00580 1.20736 0.94900 0.93406 1.12219 1.21889 0.87328 0.90583 0.70684 1.90471 1.20755 1.84915 1.37372 1.21717 0.99552 0.90935 1.05973 1.21470 0.98233 0.92620 1.04645 1.20381 0.86059 0.87390 0.77212 1.90633 1.18218 1.83282 1.51643 1.48236 1.05286 1.08612 1.70232 1.21616 0.83491 1.00572 1.00456 1.18933 0.97898 0.73519 0.93999 0.91907 1.22078 0.98518 1.04038 0.95807 1.21332 1.34347 0.94336 1.06375 0.92256 1.24897 0.95012 0.97177 0.96724 1.69883 1.39057 1.08318 1.35374 0.86498 0.78751 0.79110 0.83057 1.20622 1.21109 1.19929 1.24803 1.01679 0.97058 1.02696 1.20650 0.90380 1.00836 1.03601 1.82965 0.93748 1.08946 1.70933 0.90660 0.91371 0.90183 0.82742 0.87690 0.87586 0.88936 0.89106 0.93898 0.90171 0.92589 0.95185 0.97067 0.88890 0.92710 0.90092 0.91469 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.34 36.01 0.37 -0.15 16 2 C -0.21 -1.83 6.43 -36.20 -0.23 -2.07 16 3 C -0.10 -1.00 9.72 -38.96 -0.38 -1.38 16 4 C -0.20 -2.31 5.97 -104.75 -0.63 -2.94 16 5 C 0.42 5.43 7.11 -31.04 -0.22 5.21 16 6 O -0.46 -6.65 13.71 5.49 0.08 -6.57 16 7 C -0.14 -1.95 4.11 -27.88 -0.11 -2.07 16 8 C -0.13 -2.00 3.54 -27.89 -0.10 -2.10 16 9 C 0.50 10.36 7.67 -10.99 -0.08 10.27 16 10 O -0.56 -13.39 15.31 5.55 0.08 -13.31 16 11 N -0.59 -12.85 2.75 -175.26 -0.48 -13.33 16 12 C 0.08 1.43 9.24 59.85 0.55 1.99 16 13 C 0.26 6.64 2.64 -69.08 -0.18 6.45 16 14 H 0.06 1.87 6.90 -51.93 -0.36 1.52 16 15 C -0.15 -3.55 8.97 37.16 0.33 -3.21 16 16 C -0.53 -14.31 7.98 -34.44 -0.27 -14.59 16 17 H 0.06 1.59 7.33 -52.49 -0.38 1.21 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 20 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.14 -1.50 6.36 -34.94 -0.22 -1.72 16 25 C -0.10 -0.90 9.60 36.00 0.35 -0.55 16 26 S 0.17 1.41 22.94 -107.50 -2.47 -1.06 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.16 1.44 7.76 -52.49 -0.41 1.03 16 31 H 0.10 1.39 8.10 -51.93 -0.42 0.97 16 32 H 0.11 1.44 8.10 -51.93 -0.42 1.02 16 33 H 0.09 1.36 7.36 -51.93 -0.38 0.98 16 34 H 0.09 1.30 8.06 -51.93 -0.42 0.88 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.47 7.02 -51.93 -0.36 1.11 16 37 H 0.06 0.82 6.44 -51.93 -0.33 0.48 16 38 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 39 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.10 1.11 5.96 -51.93 -0.31 0.80 16 LS Contribution 373.95 15.07 5.64 5.64 Total: -1.00 -32.08 373.95 -9.08 -41.16 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.61 Total: 1.17 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -0.92 Total: -5.17 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.15 Total: -37.99 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.16 Total: -19.88 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.47 Total: -1.06 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.08 -9.08 -41.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264020186.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.737 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds