Wall clock time and date at job start Tue Mar 31 2020 14:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.32635 * 124.64828 * 2 1 4 4 C 1.44623 * 113.10444 * 179.97438 * 3 2 1 5 5 C 1.46360 * 123.53151 * 180.02562 * 4 3 2 6 6 O 1.21352 * 120.00023 * 180.02562 * 5 4 3 7 7 C 1.50701 * 119.99846 * 0.02562 * 5 4 3 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 5 10 10 O 1.21288 * 120.00038 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00369 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99736 * 359.97438 * 11 9 8 13 13 C 1.46505 * 120.00115 * 180.02562 * 11 9 8 14 14 H 1.08994 * 109.46996 * 359.97438 * 13 11 9 15 15 C 1.52998 * 109.46812 * 239.99682 * 13 11 9 16 16 C 1.50702 * 109.46867 * 120.00190 * 13 11 9 17 17 H 1.07997 * 120.00285 * 359.97438 * 16 13 11 18 18 C 1.37876 * 119.99489 * 180.02562 * 16 13 11 19 19 N 1.31517 * 120.00091 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99822 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.46746 * 89.99793 * 20 18 16 22 22 H 1.48499 * 109.46820 * 209.99817 * 20 18 16 23 23 H 1.48497 * 109.46911 * 329.99865 * 20 18 16 24 24 C 1.36487 * 112.93965 * 0.26499 * 4 3 2 25 25 C 1.50697 * 124.61955 * 179.72919 * 24 4 3 26 26 S 1.70443 * 110.76110 * 359.59325 * 24 4 3 27 27 H 1.08998 * 109.46787 * 89.99939 * 1 2 3 28 28 H 1.08997 * 109.46758 * 210.00157 * 1 2 3 29 29 H 1.09000 * 109.46974 * 329.99834 * 1 2 3 30 30 H 1.07994 * 123.44613 * 359.94298 * 3 2 1 31 31 H 1.09002 * 109.47060 * 299.99944 * 7 5 4 32 32 H 1.09001 * 109.47380 * 60.00031 * 7 5 4 33 33 H 1.09002 * 109.47153 * 299.99998 * 8 7 5 34 34 H 1.08998 * 109.47533 * 59.99628 * 8 7 5 35 35 H 1.08996 * 109.46784 * 90.00263 * 12 11 9 36 36 H 1.09003 * 109.47146 * 209.99886 * 12 11 9 37 37 H 1.08994 * 109.47096 * 330.00470 * 12 11 9 38 38 H 1.08994 * 109.47543 * 299.99914 * 15 13 11 39 39 H 1.09004 * 109.47151 * 60.00167 * 15 13 11 40 40 H 1.08996 * 109.46816 * 179.97438 * 15 13 11 41 41 H 0.96998 * 119.99944 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.46968 * 90.00436 * 25 24 4 43 43 H 1.09006 * 109.47239 * 210.00004 * 25 24 4 44 44 H 1.08996 * 109.47303 * 330.00363 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2612 1.0911 0.0000 4 6 3.6781 0.8017 0.0006 5 6 4.7144 1.8353 0.0013 6 8 5.8862 1.5197 0.0013 7 6 4.3263 3.2914 0.0019 8 6 5.5887 4.1558 0.0032 9 6 5.2006 5.6119 0.0032 10 8 4.0295 5.9274 0.0028 11 7 6.1548 6.5637 0.0037 12 6 7.5694 6.1827 0.0048 13 6 5.7775 7.9793 0.0043 14 1 4.6909 8.0657 0.0038 15 6 6.3432 8.6584 -1.2445 16 6 6.3345 8.6471 1.2352 17 1 6.9114 8.0743 1.9460 18 6 6.1066 9.9892 1.4541 19 7 5.4035 10.6866 0.5887 20 14 6.7964 10.8168 2.9801 21 1 8.1509 11.3492 2.6849 22 1 5.9034 11.9322 3.3847 23 1 6.8832 9.8270 4.0837 24 6 3.9478 -0.5362 -0.0048 25 6 5.3327 -1.1304 -0.0114 26 16 2.5049 -1.4434 0.0008 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.8583 2.0931 -0.0009 31 1 3.7363 3.5106 -0.8880 32 1 3.7360 3.5098 0.8919 33 1 6.1783 3.9365 0.8934 34 1 6.1793 3.9376 -0.8865 35 1 7.9209 6.0881 -1.0226 36 1 8.1514 6.9477 0.5189 37 1 7.6884 5.2289 0.5188 38 1 7.4297 8.5721 -1.2445 39 1 5.9404 8.1754 -2.1348 40 1 6.0621 9.7115 -1.2443 41 1 5.2435 11.6308 0.7426 42 1 5.6699 -1.2772 1.0147 43 1 5.3139 -2.0899 -0.5284 44 1 6.0158 -0.4541 -0.5252 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264020186.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:48 Heat of formation + Delta-G solvation = -75.117162 kcal Electronic energy + Delta-G solvation = -24525.368557 eV Core-core repulsion = 20954.343758 eV Total energy + Delta-G solvation = -3571.024798 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.18059 -40.42069 -38.11138 -37.17127 -34.86546 -34.14180 -33.74565 -31.43643 -30.36598 -27.85001 -27.46516 -27.28147 -25.79714 -24.17017 -22.50245 -21.33475 -19.84806 -19.52865 -18.52094 -18.15164 -17.63092 -17.23814 -17.01996 -16.66673 -15.96863 -15.92578 -15.48480 -15.05955 -14.78466 -14.60242 -14.32079 -14.19530 -14.06482 -13.91822 -13.84232 -13.55099 -13.51355 -13.23127 -12.96409 -12.88273 -12.72039 -12.66330 -12.62348 -12.54927 -12.48014 -12.21428 -12.14860 -12.10845 -11.86434 -11.18917 -10.67602 -10.55985 -10.46355 -9.57305 -9.41031 -9.31775 -8.14715 -6.31198 -0.36023 0.49794 0.71881 0.89869 1.41033 1.42482 1.52484 1.81201 2.00741 2.30261 2.48145 3.13067 3.16849 3.66361 3.71091 3.93859 4.01363 4.10704 4.23676 4.37457 4.44162 4.56428 4.62787 4.66432 4.68869 4.73442 4.76972 4.77169 4.86127 4.90705 4.93526 5.00183 5.04234 5.08585 5.11403 5.17651 5.23899 5.41158 5.47840 5.60353 5.67696 6.04084 6.16976 6.52030 6.76741 6.84309 7.31843 7.48592 8.89704 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.022014 B = 0.002408 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.583721 B =11627.282923 C =12136.325568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.209 4.209 3 C -0.115 4.115 4 C -0.222 4.222 5 C 0.425 3.575 6 O -0.477 6.477 7 C -0.140 4.140 8 C -0.114 4.114 9 C 0.494 3.506 10 O -0.600 6.600 11 N -0.603 5.603 12 C 0.080 3.920 13 C 0.260 3.740 14 H 0.011 0.989 15 C -0.132 4.132 16 C -0.539 4.539 17 H 0.060 0.940 18 C 0.015 3.985 19 N -0.918 5.918 20 Si 0.965 3.035 21 H -0.268 1.268 22 H -0.285 1.285 23 H -0.271 1.271 24 C -0.156 4.156 25 C -0.096 4.096 26 S 0.218 5.782 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.156 0.844 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.045 0.955 39 H 0.019 0.981 40 H 0.067 0.933 41 H 0.265 0.735 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.900 -26.346 -2.094 26.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.326 4.326 3 C -0.143 4.143 4 C -0.237 4.237 5 C 0.304 3.696 6 O -0.356 6.356 7 C -0.178 4.178 8 C -0.154 4.154 9 C 0.284 3.716 10 O -0.483 6.483 11 N -0.333 5.333 12 C -0.063 4.063 13 C 0.158 3.842 14 H 0.029 0.971 15 C -0.190 4.190 16 C -0.577 4.577 17 H 0.078 0.922 18 C -0.185 4.185 19 N -0.557 5.557 20 Si 0.790 3.210 21 H -0.193 1.193 22 H -0.211 1.211 23 H -0.196 1.196 24 C -0.276 4.276 25 C -0.154 4.154 26 S 0.485 5.515 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.173 0.827 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.038 0.962 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.271 -27.684 -2.129 28.092 hybrid contribution 0.483 2.694 0.652 2.813 sum -3.788 -24.990 -1.476 25.319 Atomic orbital electron populations 1.20466 0.85645 1.04261 1.03870 1.24655 1.01788 0.95898 1.10215 1.21321 0.90524 1.00500 1.01936 1.20695 0.95099 0.93598 1.14286 1.21791 0.87427 0.90332 0.70069 1.90464 1.21373 1.85044 1.38676 1.21662 0.98702 0.91472 1.05921 1.21396 0.99331 0.88678 1.05961 1.21274 0.85264 0.89228 0.75872 1.90607 1.20101 1.84264 1.53349 1.48265 1.07463 1.07205 1.70336 1.21836 0.80615 1.01608 1.02206 1.18540 0.94885 0.76341 0.94427 0.97092 1.21868 0.99309 1.02318 0.95544 1.21585 1.34403 0.94786 1.06963 0.92166 1.25740 0.95241 0.97850 0.99655 1.70024 1.39993 1.08576 1.37060 0.85453 0.78397 0.77875 0.79275 1.19309 1.21062 1.19568 1.25110 1.03284 0.97225 1.01996 1.20665 0.89466 1.01374 1.03927 1.82771 0.91846 1.07556 1.69316 0.89633 0.89919 0.89853 0.82691 0.87689 0.87973 0.87669 0.87330 0.91712 0.91260 0.89477 0.93622 0.96157 0.91386 0.92627 0.89651 0.89322 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.34 71.24 0.74 -0.15 16 2 C -0.21 -3.37 6.43 24.52 0.16 -3.21 16 3 C -0.12 -2.29 9.72 22.74 0.22 -2.07 16 4 C -0.22 -5.03 5.97 -19.94 -0.12 -5.15 16 5 C 0.42 10.83 7.11 27.80 0.20 11.03 16 6 O -0.48 -13.43 13.71 -3.25 -0.04 -13.48 16 7 C -0.14 -3.78 4.11 29.85 0.12 -3.65 16 8 C -0.11 -3.40 3.54 29.85 0.11 -3.30 16 9 C 0.49 20.55 7.67 87.66 0.67 21.22 16 10 O -0.60 -29.92 15.31 -3.05 -0.05 -29.97 16 11 N -0.60 -26.12 2.75 -826.79 -2.28 -28.40 16 12 C 0.08 2.63 9.24 127.77 1.18 3.81 16 13 C 0.26 13.81 2.64 44.24 0.12 13.92 16 14 H 0.01 0.70 6.90 -2.39 -0.02 0.68 16 15 C -0.13 -6.50 8.97 71.98 0.65 -5.85 16 16 C -0.54 -29.74 7.98 25.60 0.20 -29.54 16 17 H 0.06 3.23 7.33 -2.91 -0.02 3.21 16 18 C 0.01 0.81 5.30 84.65 0.45 1.26 16 19 N -0.92 -53.41 11.32 21.45 0.24 -53.17 16 20 Si 0.97 43.46 29.54 68.60 2.03 45.49 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 C -0.16 -3.06 6.36 25.28 0.16 -2.90 16 25 C -0.10 -1.64 9.60 71.23 0.68 -0.96 16 26 S 0.22 3.17 22.94 -56.49 -1.30 1.87 16 27 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.16 2.91 7.76 -2.91 -0.02 2.89 16 31 H 0.10 2.83 8.10 -2.39 -0.02 2.81 16 32 H 0.10 2.84 8.10 -2.39 -0.02 2.82 16 33 H 0.11 2.91 7.36 -2.39 -0.02 2.89 16 34 H 0.11 2.89 8.06 -2.39 -0.02 2.87 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 2.44 7.02 -2.39 -0.02 2.43 16 37 H 0.09 2.31 6.44 -2.39 -0.02 2.30 16 38 H 0.04 2.05 7.67 -2.39 -0.02 2.03 16 39 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 41 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 42 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.09 1.78 5.96 -2.39 -0.01 1.77 16 Total: -1.00 -70.88 373.95 5.14 -65.74 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 1.00 Total: 17.46 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 5.54 Total: -5.54 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -2.03 Total: -81.57 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -0.09 Total: -43.45 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.30 Total: 1.87 kcal Total: -70.88 5.14 -65.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264020186.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.376 kcal (2) G-P(sol) polarization free energy of solvation -70.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds