Wall clock time and date at job start Tue Mar 31 2020 14:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38238 * 120.00257 * 2 1 4 4 C 1.38225 * 120.00392 * 180.02562 * 3 2 1 5 5 C 1.38238 * 120.00156 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00189 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47047 * 20.00805 * 6 5 4 8 8 N 1.46505 * 109.46836 * 140.00126 * 6 5 4 9 9 S 1.65591 * 120.00300 * 244.85892 * 8 6 5 10 10 O 1.42102 * 104.28101 * 180.61685 * 9 8 6 11 11 O 1.42100 * 104.27791 * 308.47542 * 9 8 6 12 12 C 1.81401 * 104.45094 * 64.54675 * 9 8 6 13 13 C 1.53001 * 109.47306 * 180.02562 * 12 9 8 14 14 C 1.50696 * 109.46753 * 180.02562 * 13 12 9 15 15 H 1.08006 * 120.00411 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99687 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00262 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00040 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47087 * 90.00187 * 18 16 14 20 20 H 1.48501 * 109.47298 * 210.00281 * 18 16 14 21 21 H 1.48497 * 109.47373 * 330.00521 * 18 16 14 22 22 C 1.53003 * 109.47665 * 260.00353 * 6 5 4 23 23 C 1.52994 * 117.49880 * 174.64531 * 22 6 5 24 24 C 1.52994 * 60.00218 * 107.49190 * 23 22 6 25 25 C 1.38238 * 119.99506 * 0.25931 * 5 4 3 26 26 C 1.38232 * 120.00034 * 359.46993 * 25 5 4 27 27 H 1.09000 * 109.47043 * 90.00602 * 1 2 3 28 28 H 1.09000 * 109.46927 * 210.00379 * 1 2 3 29 29 H 1.08996 * 109.47014 * 330.00265 * 1 2 3 30 30 H 1.08004 * 119.99736 * 359.97424 * 3 2 1 31 31 H 1.08005 * 120.00222 * 179.97438 * 4 3 2 32 32 H 0.97010 * 119.99777 * 64.86176 * 8 6 5 33 33 H 1.08999 * 109.46982 * 300.00305 * 12 9 8 34 34 H 1.09000 * 109.47179 * 59.99681 * 12 9 8 35 35 H 1.09004 * 109.46888 * 299.99727 * 13 12 9 36 36 H 1.08998 * 109.46857 * 60.00218 * 13 12 9 37 37 H 0.97001 * 120.00106 * 179.97438 * 17 16 14 38 38 H 1.09001 * 115.55520 * 28.95431 * 22 6 5 39 39 H 1.08997 * 117.50074 * 359.97438 * 23 22 6 40 40 H 1.09007 * 117.49187 * 214.97949 * 23 22 6 41 41 H 1.08993 * 117.50462 * 107.48642 * 24 23 22 42 42 H 1.09007 * 117.49596 * 252.48852 * 24 23 22 43 43 H 1.08002 * 119.99848 * 179.72149 * 25 5 4 44 44 H 1.08005 * 120.00015 * 180.27885 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2718 0.0000 -0.0005 6 6 5.7787 0.0001 -0.0017 7 1 6.1423 0.9659 0.3492 8 7 6.2677 -1.0577 0.8862 9 16 7.1191 -0.6651 2.2512 10 8 7.4339 -1.9192 2.8407 11 8 8.1432 0.2041 1.7875 12 6 5.9319 0.2418 3.2801 13 6 6.6075 0.6646 4.5861 14 6 5.6210 1.4175 5.4411 15 1 4.6131 1.5787 5.0880 16 6 6.0051 1.9005 6.6740 17 7 7.2326 1.7047 7.1037 18 14 4.7825 2.8344 7.7335 19 1 4.0571 1.8802 8.6102 20 1 5.5075 3.8233 8.5712 21 1 3.8110 3.5421 6.8615 22 6 6.2878 -0.2510 -1.4226 23 6 7.7970 -0.1637 -1.6580 24 6 7.0987 -1.5250 -1.6677 25 6 3.5805 -1.1971 -0.0054 26 6 2.1982 -1.1971 0.0008 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6582 2.1325 -0.0004 31 1 4.1205 2.1325 -0.0010 32 1 6.0927 -1.9881 0.6745 33 1 5.5898 1.1277 2.7450 34 1 5.0794 -0.3999 3.5027 35 1 6.9499 -0.2211 5.1214 36 1 7.4597 1.3066 4.3631 37 1 7.5029 2.0449 7.9709 38 1 5.6327 0.0908 -2.2240 39 1 8.4272 0.0729 -0.8008 40 1 8.1348 0.2354 -2.6144 41 1 6.9772 -2.0215 -2.6304 42 1 7.2699 -2.1845 -0.8169 43 1 4.1205 -2.1324 -0.0100 44 1 1.6582 -2.1325 0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264069851.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:09 Heat of formation + Delta-G solvation = -37.389101 kcal Electronic energy + Delta-G solvation = -25553.838355 eV Core-core repulsion = 21984.449568 eV Total energy + Delta-G solvation = -3569.388787 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.92138 -37.97986 -36.55529 -35.44337 -34.32378 -33.87700 -32.33614 -31.15277 -30.96419 -28.28989 -25.58958 -25.08369 -22.92864 -22.33173 -21.62251 -21.31180 -20.28708 -18.91584 -17.55039 -16.99041 -16.61708 -16.09997 -15.45343 -15.28478 -15.24072 -14.82632 -14.74606 -14.52692 -13.91674 -13.64934 -13.47861 -13.28864 -13.08664 -12.51943 -12.37547 -12.31435 -12.04451 -11.74719 -11.62241 -11.54108 -11.49413 -11.43264 -11.24654 -11.07596 -11.03392 -10.95192 -10.50070 -10.38126 -10.37306 -10.15962 -9.81060 -9.52041 -9.04917 -8.96379 -8.58079 -8.49442 -6.11549 -4.16786 0.77575 1.23237 1.36297 3.08530 3.26545 3.32744 3.35569 3.64754 3.76592 4.22733 4.38223 4.46559 4.65502 4.73258 4.74979 4.84768 4.89641 4.96876 5.07672 5.11534 5.19299 5.23783 5.33211 5.40126 5.43095 5.56762 5.63874 5.65444 5.69202 5.70069 5.83599 5.89665 6.00324 6.03338 6.10653 6.24905 6.35239 6.50338 6.52361 6.58278 6.93893 7.05462 7.30807 7.36809 7.81806 8.18830 8.86643 9.47896 10.99563 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009744 B = 0.004749 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.730619 B = 5895.148284 C = 8037.963968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.118 4.118 4 C -0.105 4.105 5 C -0.099 4.099 6 C 0.225 3.775 7 H 0.103 0.897 8 N -1.118 6.118 9 S 2.588 3.412 10 O -0.967 6.967 11 O -0.964 6.964 12 C -0.586 4.586 13 C 0.029 3.971 14 C -0.518 4.518 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.891 5.891 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.158 4.158 23 C -0.176 4.176 24 C -0.175 4.175 25 C -0.095 4.095 26 C -0.122 4.122 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.412 0.588 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.032 0.968 36 H 0.033 0.967 37 H 0.265 0.735 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.121 0.879 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.429 -4.363 -19.550 22.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.136 4.136 4 C -0.124 4.124 5 C -0.100 4.100 6 C 0.117 3.883 7 H 0.121 0.879 8 N -0.874 5.874 9 S 2.686 3.314 10 O -0.958 6.958 11 O -0.954 6.954 12 C -0.720 4.720 13 C -0.010 4.010 14 C -0.558 4.558 15 H 0.079 0.921 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.726 3.274 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.178 4.178 23 C -0.213 4.213 24 C -0.213 4.213 25 C -0.114 4.114 26 C -0.140 4.140 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.247 0.753 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.116 0.884 43 H 0.139 0.861 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.318 -4.389 -19.224 21.401 hybrid contribution -1.411 0.344 0.643 1.589 sum -9.729 -4.045 -18.581 21.360 Atomic orbital electron populations 1.20790 0.91409 1.02854 1.02061 1.19929 0.95989 0.93306 0.99585 1.20996 0.94073 0.97547 1.00978 1.21051 0.94290 0.97575 0.99448 1.20103 0.95110 0.93635 1.01183 1.19063 0.89047 0.91021 0.89173 0.87895 1.56040 1.75415 1.14933 1.41058 1.05712 0.76389 0.75358 0.73981 1.93554 1.83335 1.41786 1.77082 1.93543 1.54041 1.68606 1.79175 1.30437 1.15468 1.12740 1.13343 1.18958 0.96463 0.97910 0.87694 1.20995 0.97492 1.35615 1.01682 0.92060 1.25056 0.95429 0.96137 0.97798 1.69953 1.17153 1.45702 1.20093 0.86487 0.80962 0.79653 0.80291 1.20472 1.20999 1.19755 1.22555 0.94616 1.03811 0.96803 1.23096 0.94371 1.00048 1.03773 1.22944 1.04377 0.91202 1.02756 1.20869 0.93852 0.97627 0.99034 1.21002 0.94142 0.97470 1.01376 0.91374 0.91605 0.91528 0.86046 0.85625 0.75283 0.86387 0.86111 0.94938 0.94853 0.92549 0.87047 0.87256 0.88890 0.89058 0.88438 0.86140 0.86226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.09 -0.90 5.88 -104.62 -0.62 -1.51 16 3 C -0.12 -1.24 9.70 -39.59 -0.38 -1.63 16 4 C -0.11 -1.16 9.67 -39.59 -0.38 -1.55 16 5 C -0.10 -1.11 4.91 -104.62 -0.51 -1.62 16 6 C 0.22 2.63 2.73 -69.08 -0.19 2.44 16 7 H 0.10 1.25 7.47 -51.93 -0.39 0.86 16 8 N -1.12 -14.39 3.85 -5.88 -0.02 -14.41 16 9 S 2.59 45.98 5.34 -107.50 -0.57 45.41 16 10 O -0.97 -20.07 18.08 -57.54 -1.04 -21.11 16 11 O -0.96 -19.36 17.12 -57.54 -0.99 -20.34 16 12 C -0.59 -11.38 6.00 37.16 0.22 -11.16 16 13 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 14 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 15 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 18 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 C -0.16 -1.63 5.72 -90.62 -0.52 -2.14 16 23 C -0.18 -1.95 10.23 -26.74 -0.27 -2.22 16 24 C -0.18 -1.75 9.75 -26.73 -0.26 -2.01 16 25 C -0.10 -1.02 9.32 -39.58 -0.37 -1.39 16 26 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 31 H 0.13 1.22 8.04 -52.48 -0.42 0.80 16 32 H 0.41 4.47 6.66 -34.46 -0.23 4.24 16 33 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 34 H 0.12 2.18 8.14 -51.92 -0.42 1.76 16 35 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.11 1.02 8.07 -51.93 -0.42 0.61 16 39 H 0.11 1.48 7.66 -51.93 -0.40 1.08 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.10 1.02 6.31 -51.93 -0.33 0.69 16 43 H 0.12 1.12 7.07 -52.49 -0.37 0.75 16 44 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 LS Contribution 378.31 15.07 5.70 5.70 Total: -1.00 -34.45 378.31 -11.80 -46.26 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.74 Total: 5.58 kcal Atomic # 6 Polarization: -33.67 SS G_CDS: -3.86 Total: -37.52 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.71 Total: -40.25 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -2.03 Total: -41.45 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 45.98 SS G_CDS: -0.57 Total: 45.41 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.45 -11.80 -46.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264069851.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.867 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds