Wall clock time and date at job start Tue Mar 31 2020 14:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38238 * 120.00257 * 2 1 4 4 C 1.38225 * 120.00392 * 180.02562 * 3 2 1 5 5 C 1.38238 * 120.00156 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00189 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47047 * 20.00805 * 6 5 4 8 8 N 1.46505 * 109.46836 * 140.00126 * 6 5 4 9 9 S 1.65591 * 120.00300 * 244.85892 * 8 6 5 10 10 O 1.42102 * 104.28101 * 180.61685 * 9 8 6 11 11 O 1.42100 * 104.27791 * 308.47542 * 9 8 6 12 12 C 1.81401 * 104.45094 * 64.54675 * 9 8 6 13 13 C 1.53001 * 109.47306 * 180.02562 * 12 9 8 14 14 C 1.50696 * 109.46753 * 180.02562 * 13 12 9 15 15 H 1.08006 * 120.00411 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99687 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00262 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00040 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47087 * 90.00187 * 18 16 14 20 20 H 1.48501 * 109.47298 * 210.00281 * 18 16 14 21 21 H 1.48497 * 109.47373 * 330.00521 * 18 16 14 22 22 C 1.53003 * 109.47665 * 260.00353 * 6 5 4 23 23 C 1.52994 * 117.49880 * 174.64531 * 22 6 5 24 24 C 1.52994 * 60.00218 * 107.49190 * 23 22 6 25 25 C 1.38238 * 119.99506 * 0.25931 * 5 4 3 26 26 C 1.38232 * 120.00034 * 359.46993 * 25 5 4 27 27 H 1.09000 * 109.47043 * 90.00602 * 1 2 3 28 28 H 1.09000 * 109.46927 * 210.00379 * 1 2 3 29 29 H 1.08996 * 109.47014 * 330.00265 * 1 2 3 30 30 H 1.08004 * 119.99736 * 359.97424 * 3 2 1 31 31 H 1.08005 * 120.00222 * 179.97438 * 4 3 2 32 32 H 0.97010 * 119.99777 * 64.86176 * 8 6 5 33 33 H 1.08999 * 109.46982 * 300.00305 * 12 9 8 34 34 H 1.09000 * 109.47179 * 59.99681 * 12 9 8 35 35 H 1.09004 * 109.46888 * 299.99727 * 13 12 9 36 36 H 1.08998 * 109.46857 * 60.00218 * 13 12 9 37 37 H 0.97001 * 120.00106 * 179.97438 * 17 16 14 38 38 H 1.09001 * 115.55520 * 28.95431 * 22 6 5 39 39 H 1.08997 * 117.50074 * 359.97438 * 23 22 6 40 40 H 1.09007 * 117.49187 * 214.97949 * 23 22 6 41 41 H 1.08993 * 117.50462 * 107.48642 * 24 23 22 42 42 H 1.09007 * 117.49596 * 252.48852 * 24 23 22 43 43 H 1.08002 * 119.99848 * 179.72149 * 25 5 4 44 44 H 1.08005 * 120.00015 * 180.27885 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2718 0.0000 -0.0005 6 6 5.7787 0.0001 -0.0017 7 1 6.1423 0.9659 0.3492 8 7 6.2677 -1.0577 0.8862 9 16 7.1191 -0.6651 2.2512 10 8 7.4339 -1.9192 2.8407 11 8 8.1432 0.2041 1.7875 12 6 5.9319 0.2418 3.2801 13 6 6.6075 0.6646 4.5861 14 6 5.6210 1.4175 5.4411 15 1 4.6131 1.5787 5.0880 16 6 6.0051 1.9005 6.6740 17 7 7.2326 1.7047 7.1037 18 14 4.7825 2.8344 7.7335 19 1 4.0571 1.8802 8.6102 20 1 5.5075 3.8233 8.5712 21 1 3.8110 3.5421 6.8615 22 6 6.2878 -0.2510 -1.4226 23 6 7.7970 -0.1637 -1.6580 24 6 7.0987 -1.5250 -1.6677 25 6 3.5805 -1.1971 -0.0054 26 6 2.1982 -1.1971 0.0008 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6582 2.1325 -0.0004 31 1 4.1205 2.1325 -0.0010 32 1 6.0927 -1.9881 0.6745 33 1 5.5898 1.1277 2.7450 34 1 5.0794 -0.3999 3.5027 35 1 6.9499 -0.2211 5.1214 36 1 7.4597 1.3066 4.3631 37 1 7.5029 2.0449 7.9709 38 1 5.6327 0.0908 -2.2240 39 1 8.4272 0.0729 -0.8008 40 1 8.1348 0.2354 -2.6144 41 1 6.9772 -2.0215 -2.6304 42 1 7.2699 -2.1845 -0.8169 43 1 4.1205 -2.1324 -0.0100 44 1 1.6582 -2.1325 0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264069851.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:09 Heat of formation + Delta-G solvation = -58.631063 kcal Electronic energy + Delta-G solvation = -25554.759475 eV Core-core repulsion = 21984.449568 eV Total energy + Delta-G solvation = -3570.309907 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.75163 -38.84380 -38.12678 -37.03515 -35.91209 -35.22778 -33.23034 -33.12500 -31.73844 -29.12509 -27.60527 -25.87519 -23.87916 -23.44912 -23.12446 -22.10425 -21.21621 -20.28001 -19.14320 -18.41373 -17.86370 -17.38230 -16.86261 -16.55627 -16.37169 -16.14208 -15.96079 -15.51897 -15.20702 -14.60208 -14.49194 -14.35558 -14.22371 -13.98609 -13.74311 -13.37646 -13.20719 -13.13517 -13.04255 -12.94472 -12.93424 -12.80424 -12.34535 -12.29944 -12.24678 -12.20000 -12.12746 -11.77847 -11.77539 -11.37733 -11.14629 -10.96767 -10.65313 -10.46200 -9.75227 -9.36460 -8.26612 -6.40485 -0.72097 0.42985 0.57663 1.39894 1.41655 1.52841 1.78368 2.37306 2.74478 2.84629 2.93518 3.06827 3.23292 3.59986 3.88695 3.94158 3.95255 4.05831 4.11281 4.12464 4.21118 4.24168 4.27310 4.45809 4.53485 4.65442 4.72687 4.80784 4.86417 4.87373 4.94955 5.00765 5.08186 5.24946 5.25940 5.26512 5.30384 5.32453 5.35743 5.57221 5.67480 5.75222 5.77490 6.04913 6.06935 6.17827 6.72559 7.29633 8.85747 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009744 B = 0.004749 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.730619 B = 5895.148284 C = 8037.963968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.129 4.129 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.220 3.780 7 H 0.096 0.904 8 N -1.098 6.098 9 S 2.618 3.382 10 O -0.997 6.997 11 O -0.988 6.988 12 C -0.586 4.586 13 C 0.023 3.977 14 C -0.538 4.538 15 H 0.073 0.927 16 C -0.001 4.001 17 N -0.934 5.934 18 Si 0.972 3.028 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.258 1.258 22 C -0.150 4.150 23 C -0.190 4.190 24 C -0.170 4.170 25 C -0.103 4.103 26 C -0.131 4.131 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.425 0.575 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.005 0.995 36 H 0.008 0.992 37 H 0.268 0.732 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.091 0.909 43 H 0.132 0.868 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.926 -4.400 -20.974 24.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.137 4.137 5 C -0.109 4.109 6 C 0.113 3.887 7 H 0.114 0.886 8 N -0.859 5.859 9 S 2.714 3.286 10 O -0.988 6.988 11 O -0.977 6.977 12 C -0.718 4.718 13 C -0.016 4.016 14 C -0.576 4.576 15 H 0.091 0.909 16 C -0.200 4.200 17 N -0.573 5.573 18 Si 0.795 3.205 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.182 1.182 22 C -0.170 4.170 23 C -0.227 4.227 24 C -0.207 4.207 25 C -0.122 4.122 26 C -0.149 4.149 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.153 0.847 31 H 0.150 0.850 32 H 0.263 0.737 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.023 0.977 36 H 0.027 0.973 37 H 0.076 0.924 38 H 0.147 0.853 39 H 0.098 0.902 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.109 0.891 43 H 0.150 0.850 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.830 -4.432 -20.649 23.734 hybrid contribution -0.644 0.330 0.999 1.234 sum -11.473 -4.102 -19.650 23.121 Atomic orbital electron populations 1.20832 0.89824 1.03344 1.03029 1.20273 0.97331 0.93192 0.98717 1.21245 0.94042 0.98463 1.00982 1.21249 0.94835 0.97898 0.99680 1.20024 0.94391 0.94143 1.02356 1.19220 0.89784 0.90075 0.89621 0.88629 1.55534 1.74958 1.16165 1.39242 1.04555 0.75836 0.74082 0.74132 1.93506 1.83950 1.42911 1.78388 1.93515 1.55243 1.69334 1.79640 1.30344 1.16102 1.14349 1.11031 1.18805 0.96063 0.96263 0.90500 1.21472 0.98284 1.35591 1.02296 0.90908 1.26083 0.97363 0.97116 0.99430 1.70096 1.19417 1.47050 1.20757 0.85346 0.78501 0.78260 0.78371 1.19620 1.20682 1.18191 1.22543 0.94227 1.04104 0.96138 1.23087 0.94578 1.01492 1.03548 1.23042 1.03253 0.90744 1.03663 1.21074 0.94344 0.97868 0.98892 1.21281 0.94159 0.98357 1.01057 0.90103 0.90983 0.91194 0.84741 0.84964 0.73666 0.84485 0.84546 0.97668 0.97348 0.92363 0.85286 0.90174 0.87123 0.86831 0.89095 0.84998 0.84523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 10.01 71.24 0.71 -0.78 16 2 C -0.10 -1.73 5.88 -19.87 -0.12 -1.84 16 3 C -0.13 -2.48 9.70 22.27 0.22 -2.27 16 4 C -0.12 -2.43 9.67 22.27 0.22 -2.21 16 5 C -0.11 -2.23 4.91 -19.87 -0.10 -2.33 16 6 C 0.22 4.88 2.73 44.24 0.12 5.00 16 7 H 0.10 2.28 7.47 -2.39 -0.02 2.26 16 8 N -1.10 -27.27 3.85 -172.52 -0.66 -27.93 16 9 S 2.62 94.04 5.34 -56.49 -0.30 93.74 16 10 O -1.00 -41.97 18.08 -127.65 -2.31 -44.28 16 11 O -0.99 -40.63 17.12 -127.65 -2.19 -42.81 16 12 C -0.59 -22.86 6.00 71.98 0.43 -22.43 16 13 C 0.02 1.20 4.98 29.85 0.15 1.35 16 14 C -0.54 -30.13 9.11 25.60 0.23 -29.90 16 15 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 16 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 17 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 18 Si 0.97 43.52 29.54 68.60 2.03 45.55 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 22 C -0.15 -2.82 5.72 -10.79 -0.06 -2.88 16 23 C -0.19 -4.00 10.23 30.59 0.31 -3.69 16 24 C -0.17 -3.05 9.75 30.59 0.30 -2.75 16 25 C -0.10 -1.99 9.32 22.27 0.21 -1.78 16 26 C -0.13 -2.37 9.70 22.27 0.22 -2.16 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.85 8.09 -2.39 -0.02 0.84 16 29 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 30 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 31 H 0.13 2.42 8.04 -2.91 -0.02 2.39 16 32 H 0.43 8.60 6.66 -96.74 -0.64 7.96 16 33 H 0.14 4.75 8.14 -2.39 -0.02 4.73 16 34 H 0.14 4.84 8.14 -2.39 -0.02 4.82 16 35 H 0.00 0.29 8.14 -2.38 -0.02 0.27 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 38 H 0.13 2.02 8.07 -2.39 -0.02 2.00 16 39 H 0.08 2.19 7.66 -2.39 -0.02 2.17 16 40 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.09 1.75 6.31 -2.38 -0.02 1.74 16 43 H 0.13 2.13 7.07 -2.91 -0.02 2.11 16 44 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -75.04 378.31 0.50 -74.54 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.35 Total: 26.31 kcal Atomic # 6 Polarization: -71.60 SS G_CDS: 3.30 Total: -68.30 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -0.38 Total: -84.74 kcal Atomic # 8 Polarization: -82.60 SS G_CDS: -4.49 Total: -87.09 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 94.04 SS G_CDS: -0.30 Total: 93.74 kcal Total: -75.04 0.50 -74.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264069851.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.907 kcal (2) G-P(sol) polarization free energy of solvation -75.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds