Wall clock time and date at job start Tue Mar 31 2020 14:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38260 * 120.00068 * 2 1 4 4 C 1.38214 * 120.00285 * 179.97438 * 3 2 1 5 5 C 1.38262 * 119.99756 * 359.80801 * 4 3 2 6 6 C 1.50702 * 120.00152 * 180.22795 * 5 4 3 7 7 C 1.38216 * 119.99933 * 0.42396 * 5 4 3 8 8 S 1.76204 * 120.00127 * 179.80535 * 7 5 4 9 9 O 1.42099 * 106.40034 * 181.22422 * 8 7 5 10 10 O 1.42098 * 106.39813 * 48.30530 * 8 7 5 11 11 N 1.65600 * 107.21641 * 294.76659 * 8 7 5 12 12 C 1.46490 * 119.99923 * 278.55198 * 11 8 7 13 13 C 1.50697 * 109.47696 * 265.00243 * 12 11 8 14 14 H 1.08004 * 119.99404 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00651 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99582 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00451 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46853 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47100 * 119.99851 * 17 15 13 20 20 H 1.48492 * 109.46870 * 240.00101 * 17 15 13 21 21 C 1.46503 * 119.99643 * 98.55851 * 11 8 7 22 22 C 1.53003 * 109.47029 * 96.32591 * 21 11 8 23 23 C 1.52997 * 117.49619 * 243.74247 * 22 21 11 24 24 C 1.53000 * 117.49584 * 175.08186 * 22 21 11 25 25 C 1.38215 * 120.00057 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.47231 * 270.02215 * 1 2 3 27 27 H 1.09004 * 109.46960 * 30.02356 * 1 2 3 28 28 H 1.09000 * 109.47088 * 150.02549 * 1 2 3 29 29 H 1.07997 * 119.99841 * 359.97438 * 3 2 1 30 30 H 1.07995 * 120.00234 * 180.02562 * 4 3 2 31 31 H 1.08992 * 109.46934 * 264.17593 * 6 5 4 32 32 H 1.09003 * 109.46843 * 24.17390 * 6 5 4 33 33 H 1.09001 * 109.47067 * 144.17341 * 6 5 4 34 34 H 1.09001 * 109.47594 * 25.00825 * 12 11 8 35 35 H 1.09005 * 109.47130 * 145.00567 * 12 11 8 36 36 H 0.97007 * 120.00139 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.47465 * 336.32560 * 21 11 8 38 38 H 1.09000 * 109.46466 * 216.32346 * 21 11 8 39 39 H 1.08998 * 115.54990 * 29.41326 * 22 21 11 40 40 H 1.09003 * 117.50235 * 0.02562 * 23 22 21 41 41 H 1.09000 * 117.50068 * 145.02251 * 23 22 21 42 42 H 1.09002 * 117.49847 * 214.97567 * 24 22 21 43 43 H 1.08996 * 117.49993 * 0.02562 * 24 22 21 44 44 H 1.08000 * 119.99993 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0051 6 6 5.7787 0.0000 0.0109 7 6 3.5806 -1.1970 0.0002 8 16 4.4616 -2.7229 0.0008 9 8 3.4821 -3.7518 -0.0339 10 8 5.4435 -2.6189 1.0227 11 7 5.2861 -2.8135 -1.4325 12 6 4.5966 -3.2543 -2.6475 13 6 4.8164 -4.7324 -2.8417 14 1 5.4100 -5.2880 -2.1309 15 6 4.2597 -5.3755 -3.9268 16 7 3.5365 -4.6990 -4.7921 17 14 4.5316 -7.2080 -4.1672 18 1 5.3736 -7.7325 -3.0622 19 1 3.2215 -7.9072 -4.1655 20 1 5.2154 -7.4408 -5.4646 21 6 6.7051 -2.4529 -1.4852 22 6 7.5575 -3.7181 -1.3686 23 6 8.4638 -3.8487 -0.1429 24 6 9.0724 -3.5655 -1.5186 25 6 2.1980 -1.1970 0.0005 26 1 -0.3634 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5134 29 1 1.6583 2.1326 -0.0004 30 1 4.1204 2.1327 0.0010 31 1 6.1459 -0.1059 -1.0099 32 1 6.1404 0.9382 0.4316 33 1 6.1397 -0.8323 0.6151 34 1 3.5292 -3.0551 -2.5521 35 1 4.9920 -2.7122 -3.5066 36 1 3.1451 -5.1513 -5.5558 37 1 6.9398 -1.7794 -0.6610 38 1 6.9188 -1.9568 -2.4320 39 1 7.1024 -4.6290 -1.7575 40 1 8.4525 -3.0335 0.5806 41 1 8.6054 -4.8457 0.2744 42 1 9.6142 -4.3763 -2.0058 43 1 9.4619 -2.5638 -1.7000 44 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264072324.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:48 Heat of formation + Delta-G solvation = -23.142192 kcal Electronic energy + Delta-G solvation = -26516.990200 eV Core-core repulsion = 22948.219205 eV Total energy + Delta-G solvation = -3568.770994 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.42518 -37.58348 -36.65191 -35.17210 -34.80659 -33.82772 -32.35688 -31.12624 -29.36911 -27.74436 -25.59688 -24.82579 -23.22578 -22.37916 -21.87087 -21.24703 -20.16328 -18.19608 -17.18114 -16.78936 -16.33298 -15.89218 -15.60051 -15.13678 -14.77962 -14.34905 -14.19110 -14.04863 -13.82213 -13.44003 -13.27693 -12.95769 -12.77109 -12.46302 -12.37184 -12.17804 -12.03860 -11.74290 -11.58752 -11.44690 -11.19642 -11.16239 -11.12071 -11.04574 -11.00918 -10.76289 -10.56224 -10.18520 -10.13517 -9.81071 -9.49634 -9.37589 -9.18601 -8.49179 -8.42733 -8.08764 -6.04771 -4.07417 0.86580 1.13349 1.36682 3.31978 3.39826 3.42176 3.45665 3.76704 4.27300 4.36587 4.46512 4.63999 4.78651 4.86907 5.07782 5.14572 5.20819 5.25791 5.29212 5.35210 5.47317 5.50002 5.55364 5.59332 5.62097 5.70353 5.77789 5.91309 5.97711 5.99692 6.02160 6.15399 6.21456 6.25539 6.31609 6.41388 6.48546 6.49255 6.54733 6.94913 6.96380 7.22795 7.39645 7.59146 7.93864 8.21524 8.94485 9.57017 11.04033 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011576 B = 0.005755 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.130069 B = 4864.462974 C = 6433.233479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.117 4.117 3 C -0.070 4.070 4 C -0.144 4.144 5 C 0.014 3.986 6 C -0.179 4.179 7 C -0.670 4.670 8 S 2.687 3.313 9 O -0.944 6.944 10 O -0.972 6.972 11 N -0.978 5.978 12 C 0.257 3.743 13 C -0.520 4.520 14 H 0.065 0.935 15 C 0.062 3.938 16 N -0.896 5.896 17 Si 0.894 3.106 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.285 1.285 21 C 0.153 3.847 22 C -0.165 4.165 23 C -0.183 4.183 24 C -0.183 4.183 25 C -0.016 4.016 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.035 0.965 35 H 0.037 0.963 36 H 0.262 0.738 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.129 0.871 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.958 12.283 8.200 14.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.118 4.118 3 C -0.088 4.088 4 C -0.163 4.163 5 C 0.013 3.987 6 C -0.235 4.235 7 C -0.755 4.755 8 S 2.776 3.224 9 O -0.934 6.934 10 O -0.962 6.962 11 N -0.817 5.817 12 C 0.136 3.864 13 C -0.559 4.559 14 H 0.083 0.917 15 C -0.140 4.140 16 N -0.536 5.536 17 Si 0.722 3.278 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.211 1.211 21 C 0.027 3.973 22 C -0.185 4.185 23 C -0.220 4.220 24 C -0.220 4.220 25 C -0.035 4.035 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.147 0.853 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.813 11.683 8.679 14.667 hybrid contribution -0.261 -0.269 -0.673 0.770 sum 1.552 11.414 8.006 14.028 Atomic orbital electron populations 1.20792 0.90701 1.03195 1.02331 1.20003 0.96437 0.93127 1.02221 1.21231 0.94263 0.97532 0.95817 1.21099 0.94301 0.97512 1.03342 1.19478 0.95692 0.91872 0.91681 1.21907 0.90992 1.06133 1.04431 1.31261 1.06386 1.20909 1.16897 1.02181 0.73471 0.73637 0.73116 1.93581 1.61269 1.52568 1.86022 1.93450 1.59611 1.86988 1.56122 1.57354 1.17094 1.80240 1.26992 1.19102 0.91616 0.95322 0.80404 1.21532 1.32010 0.93524 1.08856 0.91672 1.24918 0.94958 0.98355 0.95805 1.69930 1.34046 1.36023 1.13570 0.86502 0.78096 0.85342 0.77885 1.19632 1.20894 1.21072 1.21000 0.79605 0.94536 1.02158 1.23137 0.91196 1.02456 1.01711 1.23024 1.05139 1.02648 0.91162 1.22879 0.96403 1.02172 1.00585 1.20909 0.92087 0.98936 0.91595 0.91203 0.91515 0.90962 0.85702 0.85511 0.89290 0.90294 0.87152 0.94717 0.94461 0.92827 0.90219 0.90461 0.85333 0.88726 0.89460 0.89259 0.89308 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.01 36.00 0.36 -0.85 16 2 C -0.12 -1.62 5.88 -104.62 -0.62 -2.24 16 3 C -0.07 -0.87 9.70 -39.58 -0.38 -1.25 16 4 C -0.14 -1.85 9.68 -39.58 -0.38 -2.23 16 5 C 0.01 0.21 5.87 -104.62 -0.61 -0.40 16 6 C -0.18 -2.31 7.90 36.01 0.28 -2.03 16 7 C -0.67 -11.76 5.91 -39.58 -0.23 -12.00 16 8 S 2.69 54.13 4.99 -107.50 -0.54 53.59 16 9 O -0.94 -22.48 16.26 -57.17 -0.93 -23.41 16 10 O -0.97 -19.29 14.33 -57.17 -0.82 -20.11 16 11 N -0.98 -19.79 2.76 -115.67 -0.32 -20.11 16 12 C 0.26 6.26 5.12 -5.20 -0.03 6.23 16 13 C -0.52 -14.05 8.62 -34.44 -0.30 -14.35 16 14 H 0.07 1.76 6.16 -52.48 -0.32 1.44 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.90 -25.72 13.29 55.43 0.74 -24.99 16 17 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C 0.15 2.60 4.40 -4.04 -0.02 2.58 16 22 C -0.17 -2.89 5.89 -90.62 -0.53 -3.43 16 23 C -0.18 -2.79 10.18 -26.69 -0.27 -3.06 16 24 C -0.18 -2.58 10.25 -26.69 -0.27 -2.85 16 25 C -0.02 -0.27 9.20 -39.58 -0.36 -0.63 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 28 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 29 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 30 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.09 1.07 6.56 -51.93 -0.34 0.73 16 32 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 33 H 0.11 1.59 4.03 -51.93 -0.21 1.38 16 34 H 0.03 0.91 7.84 -51.93 -0.41 0.50 16 35 H 0.04 0.92 8.02 -51.93 -0.42 0.51 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.08 1.17 3.89 -51.93 -0.20 0.97 16 38 H 0.08 1.21 8.02 -51.93 -0.42 0.80 16 39 H 0.13 2.64 5.68 -51.93 -0.30 2.34 16 40 H 0.09 1.37 8.03 -51.93 -0.42 0.95 16 41 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.14 2.39 7.33 -52.49 -0.38 2.01 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -32.13 363.36 -11.22 -43.35 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.34 Total: 4.51 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: -3.47 Total: -34.89 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.42 Total: -45.10 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -1.75 Total: -43.52 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 54.13 SS G_CDS: -0.54 Total: 53.59 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.13 -11.22 -43.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264072324.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.208 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds