Wall clock time and date at job start Tue Mar 31 2020 14:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38260 * 120.00068 * 2 1 4 4 C 1.38214 * 120.00285 * 179.97438 * 3 2 1 5 5 C 1.38262 * 119.99756 * 359.80801 * 4 3 2 6 6 C 1.50702 * 120.00152 * 180.22795 * 5 4 3 7 7 C 1.38216 * 119.99933 * 0.42396 * 5 4 3 8 8 S 1.76204 * 120.00127 * 179.80535 * 7 5 4 9 9 O 1.42099 * 106.40034 * 181.22422 * 8 7 5 10 10 O 1.42098 * 106.39813 * 48.30530 * 8 7 5 11 11 N 1.65600 * 107.21641 * 294.76659 * 8 7 5 12 12 C 1.46490 * 119.99923 * 278.55198 * 11 8 7 13 13 C 1.50697 * 109.47696 * 265.00243 * 12 11 8 14 14 H 1.08004 * 119.99404 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00651 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99582 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00451 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46853 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47100 * 119.99851 * 17 15 13 20 20 H 1.48492 * 109.46870 * 240.00101 * 17 15 13 21 21 C 1.46503 * 119.99643 * 98.55851 * 11 8 7 22 22 C 1.53003 * 109.47029 * 96.32591 * 21 11 8 23 23 C 1.52997 * 117.49619 * 243.74247 * 22 21 11 24 24 C 1.53000 * 117.49584 * 175.08186 * 22 21 11 25 25 C 1.38215 * 120.00057 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.47231 * 270.02215 * 1 2 3 27 27 H 1.09004 * 109.46960 * 30.02356 * 1 2 3 28 28 H 1.09000 * 109.47088 * 150.02549 * 1 2 3 29 29 H 1.07997 * 119.99841 * 359.97438 * 3 2 1 30 30 H 1.07995 * 120.00234 * 180.02562 * 4 3 2 31 31 H 1.08992 * 109.46934 * 264.17593 * 6 5 4 32 32 H 1.09003 * 109.46843 * 24.17390 * 6 5 4 33 33 H 1.09001 * 109.47067 * 144.17341 * 6 5 4 34 34 H 1.09001 * 109.47594 * 25.00825 * 12 11 8 35 35 H 1.09005 * 109.47130 * 145.00567 * 12 11 8 36 36 H 0.97007 * 120.00139 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.47465 * 336.32560 * 21 11 8 38 38 H 1.09000 * 109.46466 * 216.32346 * 21 11 8 39 39 H 1.08998 * 115.54990 * 29.41326 * 22 21 11 40 40 H 1.09003 * 117.50235 * 0.02562 * 23 22 21 41 41 H 1.09000 * 117.50068 * 145.02251 * 23 22 21 42 42 H 1.09002 * 117.49847 * 214.97567 * 24 22 21 43 43 H 1.08996 * 117.49993 * 0.02562 * 24 22 21 44 44 H 1.08000 * 119.99993 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0051 6 6 5.7787 0.0000 0.0109 7 6 3.5806 -1.1970 0.0002 8 16 4.4616 -2.7229 0.0008 9 8 3.4821 -3.7518 -0.0339 10 8 5.4435 -2.6189 1.0227 11 7 5.2861 -2.8135 -1.4325 12 6 4.5966 -3.2543 -2.6475 13 6 4.8164 -4.7324 -2.8417 14 1 5.4100 -5.2880 -2.1309 15 6 4.2597 -5.3755 -3.9268 16 7 3.5365 -4.6990 -4.7921 17 14 4.5316 -7.2080 -4.1672 18 1 5.3736 -7.7325 -3.0622 19 1 3.2215 -7.9072 -4.1655 20 1 5.2154 -7.4408 -5.4646 21 6 6.7051 -2.4529 -1.4852 22 6 7.5575 -3.7181 -1.3686 23 6 8.4638 -3.8487 -0.1429 24 6 9.0724 -3.5655 -1.5186 25 6 2.1980 -1.1970 0.0005 26 1 -0.3634 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5134 29 1 1.6583 2.1326 -0.0004 30 1 4.1204 2.1327 0.0010 31 1 6.1459 -0.1059 -1.0099 32 1 6.1404 0.9382 0.4316 33 1 6.1397 -0.8323 0.6151 34 1 3.5292 -3.0551 -2.5521 35 1 4.9920 -2.7122 -3.5066 36 1 3.1451 -5.1513 -5.5558 37 1 6.9398 -1.7794 -0.6610 38 1 6.9188 -1.9568 -2.4320 39 1 7.1024 -4.6290 -1.7575 40 1 8.4525 -3.0335 0.5806 41 1 8.6054 -4.8457 0.2744 42 1 9.6142 -4.3763 -2.0058 43 1 9.4619 -2.5638 -1.7000 44 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264072324.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:47 Heat of formation + Delta-G solvation = -42.364195 kcal Electronic energy + Delta-G solvation = -26517.823728 eV Core-core repulsion = 22948.219205 eV Total energy + Delta-G solvation = -3569.604523 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.50969 -38.97194 -38.27506 -36.84542 -36.39306 -34.93684 -34.33901 -32.24558 -30.41243 -29.48861 -27.21768 -25.86478 -24.50611 -24.15976 -23.07333 -22.36263 -21.53872 -19.72863 -18.68691 -18.65116 -17.88805 -17.34451 -16.75765 -16.66574 -16.14112 -16.06265 -15.35962 -15.21251 -15.05424 -14.98350 -14.40003 -14.23826 -14.15304 -13.93951 -13.77472 -13.35766 -13.33057 -13.17859 -13.01505 -12.97109 -12.87883 -12.63499 -12.55669 -12.52765 -12.37649 -12.24262 -12.17793 -11.94738 -11.46579 -11.44820 -11.12663 -10.64755 -10.56287 -10.32689 -9.78880 -9.55167 -8.17834 -6.26619 -0.55224 -0.15303 0.27359 1.36936 1.39860 1.50787 2.04913 2.41609 2.49751 2.83683 3.04510 3.14051 3.39941 3.71698 3.81116 3.93515 3.94877 4.02700 4.17398 4.20208 4.26688 4.38620 4.46047 4.52317 4.62246 4.66409 4.75667 4.80633 4.84911 4.88747 4.90942 5.02286 5.08113 5.12297 5.15193 5.20618 5.28360 5.34371 5.37236 5.41296 5.44965 5.61178 5.73479 5.92498 5.95917 6.13812 6.80898 7.40576 8.90439 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011576 B = 0.005755 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.130069 B = 4864.462974 C = 6433.233479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.121 4.121 3 C -0.061 4.061 4 C -0.139 4.139 5 C 0.001 3.999 6 C -0.183 4.183 7 C -0.687 4.687 8 S 2.689 3.311 9 O -0.997 6.997 10 O -0.975 6.975 11 N -0.980 5.980 12 C 0.275 3.725 13 C -0.530 4.530 14 H 0.057 0.943 15 C 0.012 3.988 16 N -0.926 5.926 17 Si 0.950 3.050 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.271 1.271 21 C 0.148 3.852 22 C -0.202 4.202 23 C -0.182 4.182 24 C -0.154 4.154 25 C -0.051 4.051 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.169 0.831 30 H 0.168 0.832 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.009 0.991 35 H 0.031 0.969 36 H 0.265 0.735 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.117 0.883 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.008 15.277 8.580 17.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.122 4.122 3 C -0.079 4.079 4 C -0.157 4.157 5 C 0.000 4.000 6 C -0.238 4.238 7 C -0.776 4.776 8 S 2.784 3.216 9 O -0.988 6.988 10 O -0.966 6.966 11 N -0.818 5.818 12 C 0.151 3.849 13 C -0.570 4.570 14 H 0.075 0.925 15 C -0.187 4.187 16 N -0.566 5.566 17 Si 0.776 3.224 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.196 1.196 21 C 0.023 3.977 22 C -0.222 4.222 23 C -0.218 4.218 24 C -0.191 4.191 25 C -0.070 4.070 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.079 0.921 29 H 0.186 0.814 30 H 0.186 0.814 31 H 0.115 0.885 32 H 0.133 0.867 33 H 0.111 0.889 34 H 0.027 0.973 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.123 0.877 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.135 0.865 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.913 14.628 9.068 17.455 hybrid contribution -0.618 -1.075 -0.720 1.434 sum 2.295 13.553 8.348 16.082 Atomic orbital electron populations 1.20877 0.88619 1.03950 1.03599 1.20386 0.98109 0.92606 1.01137 1.21782 0.94485 0.98402 0.93223 1.21608 0.94797 0.98011 1.01273 1.19855 0.96953 0.91745 0.91495 1.21974 0.89627 1.07349 1.04880 1.30699 1.06566 1.19987 1.20381 1.01646 0.72950 0.74115 0.72889 1.93506 1.62656 1.55961 1.86669 1.93433 1.59729 1.87461 1.55939 1.57162 1.18570 1.80728 1.25318 1.18622 0.90487 0.94023 0.81752 1.21835 1.31503 0.95049 1.08564 0.92480 1.25674 0.94896 1.02380 0.95758 1.70018 1.34944 1.37565 1.14111 0.85622 0.77983 0.80587 0.78226 1.19565 1.20789 1.19604 1.21290 0.77573 0.94945 1.03860 1.23010 0.93462 1.01223 1.04511 1.23100 1.04138 1.03091 0.91521 1.23000 0.93308 1.03961 0.98880 1.20976 0.92201 0.99773 0.94092 0.89605 0.88911 0.92073 0.81367 0.81412 0.88478 0.86668 0.88941 0.97345 0.95067 0.92584 0.87629 0.89247 0.89186 0.87673 0.89612 0.88573 0.86523 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.23 10.01 71.23 0.71 -1.52 16 2 C -0.12 -3.20 5.88 -19.87 -0.12 -3.32 16 3 C -0.06 -1.27 9.70 22.27 0.22 -1.06 16 4 C -0.14 -3.00 9.68 22.27 0.22 -2.79 16 5 C 0.00 0.03 5.87 -19.86 -0.12 -0.09 16 6 C -0.18 -4.27 7.90 71.24 0.56 -3.71 16 7 C -0.69 -24.66 5.91 22.27 0.13 -24.53 16 8 S 2.69 114.12 4.99 -56.49 -0.28 113.84 16 9 O -1.00 -51.45 16.26 -128.00 -2.08 -53.53 16 10 O -0.98 -39.84 14.33 -128.00 -1.83 -41.67 16 11 N -0.98 -41.34 2.76 -519.86 -1.43 -42.77 16 12 C 0.27 14.09 5.12 85.63 0.44 14.53 16 13 C -0.53 -30.04 8.62 25.60 0.22 -29.82 16 14 H 0.06 3.26 6.16 -2.91 -0.02 3.24 16 15 C 0.01 0.68 5.46 84.65 0.46 1.14 16 16 N -0.93 -54.74 13.29 21.45 0.28 -54.45 16 17 Si 0.95 45.42 29.54 68.60 2.03 47.44 16 18 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 21 C 0.15 5.03 4.40 86.38 0.38 5.41 16 22 C -0.20 -7.14 5.89 -10.79 -0.06 -7.20 16 23 C -0.18 -5.39 10.18 30.62 0.31 -5.08 16 24 C -0.15 -4.06 10.25 30.62 0.31 -3.74 16 25 C -0.05 -1.77 9.20 22.27 0.20 -1.57 16 26 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.09 1.33 8.09 -2.38 -0.02 1.31 16 28 H 0.06 1.32 8.09 -2.39 -0.02 1.30 16 29 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 30 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.10 2.10 6.56 -2.39 -0.02 2.08 16 32 H 0.11 1.81 8.05 -2.39 -0.02 1.79 16 33 H 0.09 2.53 4.03 -2.39 -0.01 2.52 16 34 H 0.01 0.48 7.84 -2.39 -0.02 0.46 16 35 H 0.03 1.62 8.02 -2.38 -0.02 1.60 16 36 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16 37 H 0.11 3.00 3.89 -2.39 -0.01 2.99 16 38 H 0.09 2.76 8.02 -2.39 -0.02 2.74 16 39 H 0.09 3.90 5.68 -2.39 -0.01 3.88 16 40 H 0.10 2.88 8.03 -2.39 -0.02 2.86 16 41 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.12 4.55 7.33 -2.91 -0.02 4.53 16 Total: -1.00 -74.08 363.36 1.56 -72.52 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 1.00 Total: 21.97 kcal Atomic # 6 Polarization: -67.22 SS G_CDS: 3.87 Total: -63.34 kcal Atomic # 7 Polarization: -96.08 SS G_CDS: -1.15 Total: -97.23 kcal Atomic # 8 Polarization: -91.29 SS G_CDS: -3.92 Total: -95.21 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 16 Polarization: 114.12 SS G_CDS: -0.28 Total: 113.84 kcal Total: -74.08 1.56 -72.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264072324.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.161 kcal (2) G-P(sol) polarization free energy of solvation -74.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds