Wall clock time and date at job start Tue Mar 31 2020 14:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38254 * 119.99889 * 2 1 4 4 C 1.38217 * 119.99777 * 179.72038 * 3 2 1 5 5 C 1.38258 * 119.99822 * 0.51317 * 4 3 2 6 6 S 1.76204 * 119.99796 * 179.76328 * 5 4 3 7 7 O 1.42104 * 106.40210 * 156.18429 * 6 5 4 8 8 O 1.42103 * 106.40398 * 23.26793 * 6 5 4 9 9 N 1.65591 * 107.21896 * 269.72308 * 6 5 4 10 10 C 1.46498 * 120.00456 * 270.00073 * 9 6 5 11 11 C 1.50695 * 109.47417 * 265.00195 * 10 9 6 12 12 H 1.08000 * 119.99673 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00350 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99860 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00306 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47065 * 59.99889 * 15 13 11 17 17 H 1.48495 * 109.47173 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47089 * 300.00163 * 15 13 11 19 19 C 1.46505 * 119.99950 * 90.00181 * 9 6 5 20 20 C 1.52997 * 109.47212 * 265.00044 * 19 9 6 21 21 C 1.52998 * 117.50310 * 243.74638 * 20 19 9 22 22 C 1.52996 * 117.50163 * 175.08612 * 20 19 9 23 23 C 1.38207 * 120.00231 * 359.48925 * 5 4 3 24 24 C 1.38218 * 120.00134 * 179.97438 * 2 1 3 25 25 C 1.50696 * 119.99723 * 0.02562 * 24 2 1 26 26 H 1.08991 * 109.47173 * 270.02148 * 1 2 3 27 27 H 1.09006 * 109.46752 * 30.02210 * 1 2 3 28 28 H 1.08996 * 109.47139 * 150.02039 * 1 2 3 29 29 H 1.07998 * 120.00360 * 0.02562 * 3 2 1 30 30 H 1.08000 * 119.99941 * 180.27740 * 4 3 2 31 31 H 1.08999 * 109.46835 * 25.00228 * 10 9 6 32 32 H 1.09001 * 109.47298 * 144.99801 * 10 9 6 33 33 H 0.96998 * 119.99922 * 179.97438 * 14 13 11 34 34 H 1.09002 * 109.47068 * 25.00104 * 19 9 6 35 35 H 1.09001 * 109.47372 * 145.00192 * 19 9 6 36 36 H 1.09008 * 115.55245 * 29.41332 * 20 19 9 37 37 H 1.09000 * 117.49561 * 359.97438 * 21 20 19 38 38 H 1.09000 * 117.50593 * 145.01245 * 21 20 19 39 39 H 1.09004 * 117.49898 * 214.97822 * 22 20 19 40 40 H 1.09002 * 117.49721 * 359.97438 * 22 20 19 41 41 H 1.08003 * 120.00257 * 180.27647 * 23 5 4 42 42 H 1.08999 * 109.47219 * 270.02240 * 25 24 2 43 43 H 1.09007 * 109.47431 * 30.02320 * 25 24 2 44 44 H 1.09002 * 109.47365 * 150.01879 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2717 0.0000 0.0010 6 16 6.0337 0.0000 0.0021 7 8 6.4346 -1.2496 0.5473 8 8 6.4347 1.2499 0.5464 9 7 6.5249 -0.0006 -1.5793 10 6 6.7422 -1.2695 -2.2784 11 6 8.2002 -1.6427 -2.2007 12 1 8.8955 -0.9988 -1.6827 13 6 8.6465 -2.8061 -2.7909 14 7 7.7997 -3.5905 -3.4212 15 14 10.4539 -3.2682 -2.6951 16 1 10.8535 -3.4117 -1.2721 17 1 10.6739 -4.5551 -3.4026 18 1 11.2711 -2.2055 -3.3340 19 6 6.7422 1.2679 -2.2793 20 6 5.4779 1.6465 -3.0532 21 6 5.5766 1.7135 -4.5785 22 6 5.4624 3.0026 -3.7612 23 6 3.5807 -1.1970 0.0009 24 6 2.1981 -1.1970 0.0005 25 6 1.4446 -2.5020 0.0005 26 1 -0.3633 0.0004 1.0276 27 1 -0.3633 0.8899 -0.5142 28 1 -0.3633 -0.8901 -0.5135 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1326 0.0104 31 1 6.1421 -2.0497 -1.8102 32 1 6.4494 -1.1637 -3.3230 33 1 8.1138 -4.4087 -3.8367 34 1 6.9717 2.0485 -1.5539 35 1 7.5753 1.1614 -2.9741 36 1 4.5404 1.2917 -2.6247 37 1 6.5425 1.4883 -5.0307 38 1 4.7042 1.4031 -5.1536 39 1 4.5148 3.5400 -3.7989 40 1 6.3529 3.6254 -3.6753 41 1 4.1207 -2.1323 0.0016 42 1 1.2622 -2.8163 1.0282 43 1 0.4925 -2.3719 -0.5141 44 1 2.0340 -3.2619 -0.5126 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264106579.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:07 Heat of formation + Delta-G solvation = -31.283360 kcal Electronic energy + Delta-G solvation = -26124.697116 eV Core-core repulsion = 22555.573094 eV Total energy + Delta-G solvation = -3569.124022 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.53046 -37.60105 -36.58221 -35.17200 -34.76135 -33.52872 -32.35114 -32.20004 -27.87025 -27.78726 -26.60893 -25.35538 -22.46554 -22.22920 -22.06303 -21.34196 -20.34767 -18.22906 -17.32380 -16.64642 -16.37517 -16.03026 -15.60947 -15.23497 -14.65868 -14.45099 -14.33214 -14.25540 -13.98850 -13.24991 -13.14311 -12.93073 -12.75739 -12.59251 -12.45707 -12.16120 -12.01200 -11.83556 -11.69891 -11.45687 -11.39773 -11.30522 -11.11543 -11.06800 -11.02659 -10.77927 -10.56155 -10.38708 -10.13805 -9.99636 -9.71678 -9.55183 -8.99119 -8.69174 -8.41591 -8.06119 -6.04128 -4.07847 0.83666 1.14569 1.37273 3.35299 3.38896 3.39358 3.44203 3.78030 4.10533 4.38106 4.47606 4.63286 4.68620 4.87899 4.90076 4.99864 5.17220 5.20656 5.24881 5.31447 5.31832 5.34743 5.36878 5.56585 5.64313 5.67844 5.69585 5.76743 5.81587 5.86076 6.01840 6.10748 6.12816 6.17546 6.25314 6.27921 6.35705 6.51138 6.53316 6.61774 6.94888 7.27035 7.41538 7.61962 7.93178 8.22499 8.94084 9.56993 11.04419 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012114 B = 0.004917 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.816438 B = 5692.885448 C = 6528.928895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.043 4.043 3 C -0.144 4.144 4 C -0.025 4.025 5 C -0.672 4.672 6 S 2.683 3.317 7 O -0.943 6.943 8 O -0.977 6.977 9 N -0.976 5.976 10 C 0.258 3.742 11 C -0.528 4.528 12 H 0.060 0.940 13 C 0.064 3.936 14 N -0.896 5.896 15 Si 0.895 3.105 16 H -0.274 1.274 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.151 3.849 20 C -0.170 4.170 21 C -0.172 4.172 22 C -0.182 4.182 23 C -0.011 4.011 24 C -0.111 4.111 25 C -0.118 4.118 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.127 0.873 30 H 0.137 0.863 31 H 0.037 0.963 32 H 0.039 0.961 33 H 0.264 0.736 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.142 0.858 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.297 9.205 2.580 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.043 4.043 3 C -0.162 4.162 4 C -0.044 4.044 5 C -0.757 4.757 6 S 2.772 3.228 7 O -0.933 6.933 8 O -0.967 6.967 9 N -0.815 5.815 10 C 0.136 3.864 11 C -0.567 4.567 12 H 0.079 0.921 13 C -0.138 4.138 14 N -0.535 5.535 15 Si 0.723 3.277 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.202 1.202 19 C 0.025 3.975 20 C -0.190 4.190 21 C -0.209 4.209 22 C -0.220 4.220 23 C -0.030 4.030 24 C -0.112 4.112 25 C -0.174 4.174 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.144 0.856 30 H 0.154 0.846 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.159 0.841 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.791 8.998 3.203 16.775 hybrid contribution 0.183 -0.357 -0.407 0.571 sum -13.609 8.641 2.795 16.361 Atomic orbital electron populations 1.20952 0.91103 1.03192 1.02619 1.20003 0.96008 0.92861 0.95451 1.21069 0.94204 0.97517 1.03436 1.20858 0.94459 0.96621 0.92430 1.31442 1.28826 0.99024 1.16386 1.02251 0.73564 0.73425 0.73554 1.93600 1.80135 1.43096 1.76458 1.93489 1.81188 1.44672 1.77363 1.57383 1.80176 1.13303 1.30612 1.19085 0.96973 0.77267 0.93062 1.21446 0.93720 1.06681 1.34874 0.92145 1.24902 0.97965 0.95948 0.95032 1.69913 1.34455 1.13289 1.35823 0.86602 0.85007 0.77644 0.78478 1.19973 1.21227 1.20198 1.20828 0.95388 0.84884 0.96448 1.22949 1.00799 1.00043 0.95231 1.22981 1.03249 1.00852 0.93832 1.22928 1.02746 0.90790 1.05545 1.20902 0.93798 0.97163 0.91186 1.19867 0.93746 0.95196 1.02344 1.20876 1.00033 0.94025 1.02493 0.90720 0.91343 0.90743 0.85556 0.84570 0.94492 0.94291 0.92686 0.89791 0.89191 0.88070 0.88373 0.89365 0.89304 0.88744 0.84060 0.91064 0.91171 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.60 36.01 0.35 -0.68 16 2 C -0.04 -0.52 5.88 -104.62 -0.62 -1.14 16 3 C -0.14 -1.78 9.70 -39.58 -0.38 -2.17 16 4 C -0.02 -0.36 9.09 -39.58 -0.36 -0.72 16 5 C -0.67 -11.49 5.97 -39.59 -0.24 -11.73 16 6 S 2.68 54.59 5.65 -107.50 -0.61 53.99 16 7 O -0.94 -22.58 16.25 -57.17 -0.93 -23.50 16 8 O -0.98 -20.28 15.83 -57.17 -0.91 -21.18 16 9 N -0.98 -20.18 2.77 -115.66 -0.32 -20.50 16 10 C 0.26 6.36 5.10 -5.20 -0.03 6.33 16 11 C -0.53 -14.58 9.38 -34.44 -0.32 -14.90 16 12 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 13 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.90 -25.82 13.29 55.43 0.74 -25.08 16 15 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 16 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.15 2.64 5.96 -4.04 -0.02 2.62 16 20 C -0.17 -2.55 6.01 -90.62 -0.54 -3.10 16 21 C -0.17 -2.38 10.18 -26.70 -0.27 -2.65 16 22 C -0.18 -2.22 10.25 -26.70 -0.27 -2.50 16 23 C -0.01 -0.19 9.18 -39.59 -0.36 -0.55 16 24 C -0.11 -1.51 5.88 -104.63 -0.62 -2.13 16 25 C -0.12 -1.26 9.60 36.00 0.35 -0.91 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 28 H 0.07 0.56 5.95 -51.93 -0.31 0.25 16 29 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 30 H 0.14 1.83 7.61 -52.49 -0.40 1.43 16 31 H 0.04 0.97 7.61 -51.93 -0.40 0.57 16 32 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.08 1.38 6.91 -51.93 -0.36 1.02 16 35 H 0.09 1.61 7.84 -51.93 -0.41 1.20 16 36 H 0.10 1.54 7.71 -51.92 -0.40 1.14 16 37 H 0.10 1.40 8.03 -51.93 -0.42 0.98 16 38 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.14 2.40 7.62 -52.48 -0.40 2.00 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.61 5.95 -51.93 -0.31 0.30 16 44 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 LS Contribution 376.30 15.07 5.67 5.67 Total: -1.00 -32.65 376.30 -11.56 -44.21 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.74 Total: 2.29 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: -3.44 Total: -32.53 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.42 Total: -45.58 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -1.83 Total: -44.69 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 54.59 SS G_CDS: -0.61 Total: 53.99 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.65 -11.56 -44.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264106579.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.927 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds