Wall clock time and date at job start Tue Mar 31 2020 14:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38254 * 119.99889 * 2 1 4 4 C 1.38217 * 119.99777 * 179.72038 * 3 2 1 5 5 C 1.38258 * 119.99822 * 0.51317 * 4 3 2 6 6 S 1.76204 * 119.99796 * 179.76328 * 5 4 3 7 7 O 1.42104 * 106.40210 * 156.18429 * 6 5 4 8 8 O 1.42103 * 106.40398 * 23.26793 * 6 5 4 9 9 N 1.65591 * 107.21896 * 269.72308 * 6 5 4 10 10 C 1.46498 * 120.00456 * 270.00073 * 9 6 5 11 11 C 1.50695 * 109.47417 * 265.00195 * 10 9 6 12 12 H 1.08000 * 119.99673 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00350 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99860 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00306 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47065 * 59.99889 * 15 13 11 17 17 H 1.48495 * 109.47173 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47089 * 300.00163 * 15 13 11 19 19 C 1.46505 * 119.99950 * 90.00181 * 9 6 5 20 20 C 1.52997 * 109.47212 * 265.00044 * 19 9 6 21 21 C 1.52998 * 117.50310 * 243.74638 * 20 19 9 22 22 C 1.52996 * 117.50163 * 175.08612 * 20 19 9 23 23 C 1.38207 * 120.00231 * 359.48925 * 5 4 3 24 24 C 1.38218 * 120.00134 * 179.97438 * 2 1 3 25 25 C 1.50696 * 119.99723 * 0.02562 * 24 2 1 26 26 H 1.08991 * 109.47173 * 270.02148 * 1 2 3 27 27 H 1.09006 * 109.46752 * 30.02210 * 1 2 3 28 28 H 1.08996 * 109.47139 * 150.02039 * 1 2 3 29 29 H 1.07998 * 120.00360 * 0.02562 * 3 2 1 30 30 H 1.08000 * 119.99941 * 180.27740 * 4 3 2 31 31 H 1.08999 * 109.46835 * 25.00228 * 10 9 6 32 32 H 1.09001 * 109.47298 * 144.99801 * 10 9 6 33 33 H 0.96998 * 119.99922 * 179.97438 * 14 13 11 34 34 H 1.09002 * 109.47068 * 25.00104 * 19 9 6 35 35 H 1.09001 * 109.47372 * 145.00192 * 19 9 6 36 36 H 1.09008 * 115.55245 * 29.41332 * 20 19 9 37 37 H 1.09000 * 117.49561 * 359.97438 * 21 20 19 38 38 H 1.09000 * 117.50593 * 145.01245 * 21 20 19 39 39 H 1.09004 * 117.49898 * 214.97822 * 22 20 19 40 40 H 1.09002 * 117.49721 * 359.97438 * 22 20 19 41 41 H 1.08003 * 120.00257 * 180.27647 * 23 5 4 42 42 H 1.08999 * 109.47219 * 270.02240 * 25 24 2 43 43 H 1.09007 * 109.47431 * 30.02320 * 25 24 2 44 44 H 1.09002 * 109.47365 * 150.01879 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2717 0.0000 0.0010 6 16 6.0337 0.0000 0.0021 7 8 6.4346 -1.2496 0.5473 8 8 6.4347 1.2499 0.5464 9 7 6.5249 -0.0006 -1.5793 10 6 6.7422 -1.2695 -2.2784 11 6 8.2002 -1.6427 -2.2007 12 1 8.8955 -0.9988 -1.6827 13 6 8.6465 -2.8061 -2.7909 14 7 7.7997 -3.5905 -3.4212 15 14 10.4539 -3.2682 -2.6951 16 1 10.8535 -3.4117 -1.2721 17 1 10.6739 -4.5551 -3.4026 18 1 11.2711 -2.2055 -3.3340 19 6 6.7422 1.2679 -2.2793 20 6 5.4779 1.6465 -3.0532 21 6 5.5766 1.7135 -4.5785 22 6 5.4624 3.0026 -3.7612 23 6 3.5807 -1.1970 0.0009 24 6 2.1981 -1.1970 0.0005 25 6 1.4446 -2.5020 0.0005 26 1 -0.3633 0.0004 1.0276 27 1 -0.3633 0.8899 -0.5142 28 1 -0.3633 -0.8901 -0.5135 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1326 0.0104 31 1 6.1421 -2.0497 -1.8102 32 1 6.4494 -1.1637 -3.3230 33 1 8.1138 -4.4087 -3.8367 34 1 6.9717 2.0485 -1.5539 35 1 7.5753 1.1614 -2.9741 36 1 4.5404 1.2917 -2.6247 37 1 6.5425 1.4883 -5.0307 38 1 4.7042 1.4031 -5.1536 39 1 4.5148 3.5400 -3.7989 40 1 6.3529 3.6254 -3.6753 41 1 4.1207 -2.1323 0.0016 42 1 1.2622 -2.8163 1.0282 43 1 0.4925 -2.3719 -0.5141 44 1 2.0340 -3.2619 -0.5126 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264106579.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:06 Heat of formation + Delta-G solvation = -50.510905 kcal Electronic energy + Delta-G solvation = -26125.530885 eV Core-core repulsion = 22555.573094 eV Total energy + Delta-G solvation = -3569.957791 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.59160 -38.89512 -38.27898 -36.89230 -36.39379 -34.55060 -34.38905 -33.20211 -29.71215 -28.70872 -27.58259 -27.06095 -24.34320 -23.31715 -23.14354 -22.46877 -21.58298 -19.78068 -18.87443 -18.38921 -18.16294 -17.51629 -16.88440 -16.36203 -16.28787 -15.98711 -15.50334 -15.27449 -15.12696 -14.83029 -14.40276 -14.23132 -14.14882 -13.64441 -13.61596 -13.55164 -13.20604 -13.15690 -13.10963 -13.01762 -12.95831 -12.73364 -12.63814 -12.59002 -12.40518 -12.27787 -12.04349 -12.02025 -11.80112 -11.57890 -11.21296 -10.75092 -10.58318 -10.07402 -9.81798 -9.72707 -8.19421 -6.31140 -0.57744 -0.18042 0.27693 1.38912 1.42766 1.49658 2.01607 2.41254 2.49721 2.83987 2.98428 3.11593 3.31774 3.74099 3.79925 3.83624 3.89589 4.01307 4.16357 4.20973 4.24081 4.25980 4.47626 4.51907 4.65224 4.70953 4.76428 4.84276 4.89620 4.89918 4.90870 4.94148 5.08788 5.10296 5.13065 5.18453 5.21957 5.31373 5.32727 5.34606 5.48438 5.52990 5.69942 5.91741 5.91923 6.10949 6.76283 7.37198 8.88205 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012114 B = 0.004917 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.816438 B = 5692.885448 C = 6528.928895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.034 4.034 3 C -0.136 4.136 4 C -0.033 4.033 5 C -0.681 4.681 6 S 2.687 3.313 7 O -0.993 6.993 8 O -0.987 6.987 9 N -0.982 5.982 10 C 0.277 3.723 11 C -0.548 4.548 12 H 0.053 0.947 13 C 0.015 3.985 14 N -0.923 5.923 15 Si 0.954 3.046 16 H -0.278 1.278 17 H -0.276 1.276 18 H -0.263 1.263 19 C 0.146 3.854 20 C -0.189 4.189 21 C -0.181 4.181 22 C -0.151 4.151 23 C -0.041 4.041 24 C -0.116 4.116 25 C -0.119 4.119 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.167 0.833 30 H 0.147 0.853 31 H 0.013 0.987 32 H 0.029 0.971 33 H 0.267 0.733 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.118 0.882 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.856 11.141 2.306 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.035 4.035 3 C -0.155 4.155 4 C -0.052 4.052 5 C -0.771 4.771 6 S 2.782 3.218 7 O -0.983 6.983 8 O -0.978 6.978 9 N -0.820 5.820 10 C 0.154 3.846 11 C -0.588 4.588 12 H 0.071 0.929 13 C -0.185 4.185 14 N -0.563 5.563 15 Si 0.779 3.221 16 H -0.203 1.203 17 H -0.201 1.201 18 H -0.188 1.188 19 C 0.021 3.979 20 C -0.209 4.209 21 C -0.218 4.218 22 C -0.188 4.188 23 C -0.060 4.060 24 C -0.117 4.117 25 C -0.175 4.175 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.184 0.816 30 H 0.164 0.836 31 H 0.031 0.969 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.136 0.864 42 H 0.103 0.897 43 H 0.116 0.884 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.287 10.959 2.919 19.847 hybrid contribution 0.824 -0.913 -0.284 1.262 sum -15.464 10.046 2.635 18.628 Atomic orbital electron populations 1.21077 0.87684 1.04811 1.04153 1.20539 0.98371 0.91881 0.92681 1.21526 0.93123 0.99399 1.01415 1.21091 0.95891 0.95762 0.92469 1.30696 1.25710 1.00675 1.19975 1.01634 0.74966 0.72246 0.72990 1.93528 1.82148 1.45161 1.77504 1.93454 1.82441 1.44431 1.77441 1.57211 1.81277 1.13045 1.30446 1.18570 0.95134 0.78502 0.92384 1.21783 0.95083 1.07033 1.34862 0.92907 1.25708 1.02245 0.95865 0.94648 1.70009 1.36258 1.13656 1.36388 0.85668 0.80103 0.78036 0.78288 1.20326 1.20078 1.18778 1.20989 0.96738 0.83594 0.96581 1.22786 0.99206 1.03253 0.95652 1.23031 1.03160 1.02626 0.93004 1.23058 1.04513 0.89539 1.01709 1.20900 0.95519 0.96121 0.93504 1.20209 0.92540 0.97477 1.01512 1.20965 1.00617 0.92273 1.03624 0.88943 0.89308 0.89642 0.81600 0.83578 0.96919 0.95315 0.92393 0.88919 0.90311 0.88229 0.89412 0.88511 0.86792 0.87629 0.86409 0.89692 0.88443 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.60 71.24 0.68 -0.75 16 2 C -0.03 -0.72 5.88 -19.87 -0.12 -0.84 16 3 C -0.14 -2.91 9.70 22.27 0.22 -2.69 16 4 C -0.03 -0.92 9.09 22.27 0.20 -0.72 16 5 C -0.68 -23.96 5.97 22.27 0.13 -23.82 16 6 S 2.69 115.74 5.65 -56.49 -0.32 115.42 16 7 O -0.99 -51.37 16.25 -128.00 -2.08 -53.45 16 8 O -0.99 -42.35 15.83 -128.00 -2.03 -44.38 16 9 N -0.98 -42.92 2.77 -519.85 -1.44 -44.36 16 10 C 0.28 14.57 5.10 85.63 0.44 15.01 16 11 C -0.55 -31.72 9.38 25.60 0.24 -31.48 16 12 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 13 C 0.01 0.86 5.46 84.65 0.46 1.32 16 14 N -0.92 -54.89 13.29 21.45 0.28 -54.60 16 15 Si 0.95 45.26 29.54 68.60 2.03 47.29 16 16 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 19 C 0.15 5.28 5.96 86.38 0.51 5.80 16 20 C -0.19 -5.59 6.01 -10.80 -0.06 -5.66 16 21 C -0.18 -4.87 10.18 30.62 0.31 -4.56 16 22 C -0.15 -3.31 10.25 30.62 0.31 -2.99 16 23 C -0.04 -1.41 9.18 22.27 0.20 -1.20 16 24 C -0.12 -3.06 5.88 -19.87 -0.12 -3.17 16 25 C -0.12 -2.36 9.60 71.23 0.68 -1.68 16 26 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.09 0.76 8.09 -2.38 -0.02 0.74 16 28 H 0.08 0.86 5.95 -2.39 -0.01 0.85 16 29 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 30 H 0.15 3.71 7.61 -2.91 -0.02 3.69 16 31 H 0.01 0.73 7.61 -2.39 -0.02 0.71 16 32 H 0.03 1.54 8.11 -2.39 -0.02 1.52 16 33 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.09 3.11 6.91 -2.39 -0.02 3.09 16 35 H 0.08 2.95 7.84 -2.39 -0.02 2.93 16 36 H 0.10 2.98 7.71 -2.38 -0.02 2.97 16 37 H 0.09 2.52 8.03 -2.39 -0.02 2.50 16 38 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.12 4.47 7.62 -2.91 -0.02 4.45 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.10 1.39 5.95 -2.38 -0.01 1.37 16 44 H 0.06 1.35 8.09 -2.39 -0.02 1.33 16 Total: -1.00 -74.24 376.30 1.54 -72.70 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.99 Total: 18.81 kcal Atomic # 6 Polarization: -61.54 SS G_CDS: 4.11 Total: -57.43 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -1.15 Total: -98.96 kcal Atomic # 8 Polarization: -93.72 SS G_CDS: -4.11 Total: -97.83 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 16 Polarization: 115.74 SS G_CDS: -0.32 Total: 115.42 kcal Total: -74.24 1.54 -72.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264106579.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.189 kcal (2) G-P(sol) polarization free energy of solvation -74.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds