Wall clock time and date at job start Tue Mar 31 2020 13:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38253 * 120.03145 * 2 1 4 4 C 1.38101 * 119.92925 * 179.97438 * 3 2 1 5 5 C 1.38302 * 120.28927 * 0.02751 * 4 3 2 6 6 C 1.38458 * 119.81239 * 359.94436 * 5 4 3 7 7 C 1.38100 * 120.02823 * 179.97438 * 2 1 3 8 8 C 1.51370 * 109.79095 * 180.02562 * 6 5 4 9 9 C 1.54350 * 105.17329 * 342.83806 * 8 6 5 10 10 C 1.51366 * 130.55752 * 180.02562 * 5 4 3 11 11 H 1.09003 * 110.30249 * 316.12282 * 10 5 4 12 12 N 1.46492 * 110.30670 * 78.17555 * 10 5 4 13 13 S 1.65597 * 120.00495 * 230.50785 * 12 10 5 14 14 O 1.42107 * 104.27563 * 308.19426 * 13 12 10 15 15 O 1.42094 * 104.28204 * 180.33846 * 13 12 10 16 16 C 1.81399 * 104.44859 * 64.26536 * 13 12 10 17 17 C 1.53008 * 109.47050 * 176.41196 * 16 13 12 18 18 C 1.53001 * 109.46812 * 180.02562 * 17 16 13 19 19 C 1.50699 * 109.46824 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00080 * 0.02562 * 19 18 17 21 21 C 1.37872 * 119.99835 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00329 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99730 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47343 * 270.00032 * 23 21 19 25 25 H 1.48499 * 109.47100 * 30.00666 * 23 21 19 26 26 H 1.48506 * 109.46961 * 150.00344 * 23 21 19 27 27 H 1.09008 * 109.47351 * 270.02679 * 1 2 3 28 28 H 1.09003 * 109.47124 * 30.01932 * 1 2 3 29 29 H 1.08998 * 109.47729 * 150.02029 * 1 2 3 30 30 H 1.08004 * 120.03615 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.89236 * 179.97438 * 4 3 2 32 32 H 1.08001 * 119.89511 * 359.97438 * 7 2 1 33 33 H 1.08998 * 110.30350 * 223.90895 * 8 6 5 34 34 H 1.09002 * 110.38328 * 101.80197 * 8 6 5 35 35 H 1.08996 * 110.82085 * 268.12064 * 9 8 6 36 36 H 1.08995 * 110.98856 * 144.64583 * 9 8 6 37 37 H 0.97012 * 119.99847 * 50.51189 * 12 10 5 38 38 H 1.08995 * 109.46969 * 56.41104 * 16 13 12 39 39 H 1.09004 * 109.46927 * 296.40422 * 16 13 12 40 40 H 1.08997 * 109.46843 * 59.99883 * 17 16 13 41 41 H 1.09002 * 109.46216 * 299.99755 * 17 16 13 42 42 H 1.08995 * 109.47119 * 59.99961 * 18 17 16 43 43 H 1.08995 * 109.47051 * 299.99416 * 18 17 16 44 44 H 0.97000 * 119.99805 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1969 0.0000 4 6 3.5799 1.1945 0.0005 5 6 4.2753 -0.0010 0.0005 6 6 3.5830 -1.2001 0.0011 7 6 2.1981 -1.1956 0.0005 8 6 4.5602 -2.3561 0.0016 9 6 5.9080 -1.7459 -0.4384 10 6 5.7643 -0.2735 0.0015 11 1 6.2695 0.3836 -0.7063 12 7 6.3140 -0.0887 1.3468 13 16 7.6498 0.8637 1.5718 14 8 8.5989 0.3619 0.6407 15 8 7.8927 0.8020 2.9705 16 6 7.1060 2.5267 1.0929 17 6 8.2379 3.5253 1.3433 18 6 7.7789 4.9280 0.9399 19 6 8.8934 5.9116 1.1871 20 1 9.8352 5.5704 1.5911 21 6 8.7114 7.2470 0.8966 22 7 7.5649 7.6625 0.4041 23 14 10.0928 8.4665 1.2037 24 1 9.9790 9.0064 2.5823 25 1 11.4012 7.7821 1.0464 26 1 9.9961 9.5804 0.2263 27 1 -0.3634 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3634 -0.8901 -0.5135 30 1 1.6600 2.1329 -0.0004 31 1 4.1198 2.1298 0.0001 32 1 1.6568 -2.1302 0.0014 33 1 4.2419 -3.1207 -0.7070 34 1 4.6458 -2.7805 1.0019 35 1 6.0313 -1.8172 -1.5190 36 1 6.7403 -2.2249 0.0773 37 1 5.8955 -0.5244 2.1058 38 1 6.2352 2.8086 1.6847 39 1 6.8438 2.5325 0.0349 40 1 9.1087 3.2433 0.7515 41 1 8.5000 3.5193 2.4013 42 1 6.9082 5.2096 1.5320 43 1 7.5164 4.9341 -0.1180 44 1 6.8474 7.0294 0.2450 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264569493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:16 Heat of formation + Delta-G solvation = -99.713067 kcal Electronic energy + Delta-G solvation = -24952.305064 eV Core-core repulsion = 21380.213707 eV Total energy + Delta-G solvation = -3572.091357 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.28130 -38.32537 -37.76698 -37.14353 -36.80515 -34.30464 -34.24467 -32.86166 -30.60063 -29.34806 -28.22827 -26.42090 -25.49290 -23.48634 -22.81117 -21.88474 -21.14132 -20.48545 -19.17255 -18.73077 -17.99254 -17.28469 -16.81201 -16.62708 -16.02097 -15.83272 -15.68927 -15.67936 -15.34870 -15.15177 -14.54663 -14.24674 -14.12437 -13.95035 -13.69602 -13.43911 -13.40648 -13.29505 -13.22035 -13.13579 -12.93160 -12.74260 -12.63157 -12.55700 -12.33665 -12.05533 -11.95747 -11.93867 -11.87784 -11.71972 -11.50461 -10.79577 -10.57788 -10.49514 -9.71074 -9.41533 -8.72802 -6.43810 -0.85733 0.30351 0.44574 1.51348 1.60034 1.70158 1.78304 2.53197 2.63253 2.78204 3.11730 3.13198 3.30663 3.53043 3.61286 3.76752 3.91996 4.00985 4.06587 4.16092 4.21045 4.23573 4.31027 4.48384 4.53063 4.65733 4.72721 4.73631 4.81503 4.84498 4.85780 4.88124 5.04570 5.07780 5.20747 5.23927 5.27260 5.28885 5.34950 5.48797 5.65312 5.67222 5.93571 5.99907 6.07807 6.14471 6.53798 7.37232 8.68723 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.003179 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.107810 B = 8806.185943 C =10377.016714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.105 4.105 5 C -0.135 4.135 6 C -0.083 4.083 7 C -0.120 4.120 8 C -0.079 4.079 9 C -0.130 4.130 10 C 0.183 3.817 11 H 0.098 0.902 12 N -1.095 6.095 13 S 2.631 3.369 14 O -0.982 6.982 15 O -0.990 6.990 16 C -0.614 4.614 17 C -0.098 4.098 18 C 0.016 3.984 19 C -0.629 4.629 20 H 0.051 0.949 21 C -0.036 4.036 22 N -0.935 5.935 23 Si 1.118 2.882 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.280 1.280 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.132 0.868 31 H 0.119 0.881 32 H 0.140 0.860 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.425 0.575 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.066 0.934 41 H 0.066 0.934 42 H -0.001 1.001 43 H 0.000 1.000 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.904 -22.458 -2.165 26.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.157 4.157 4 C -0.124 4.124 5 C -0.137 4.137 6 C -0.084 4.084 7 C -0.138 4.138 8 C -0.115 4.115 9 C -0.169 4.169 10 C 0.076 3.924 11 H 0.116 0.884 12 N -0.854 5.854 13 S 2.726 3.274 14 O -0.972 6.972 15 O -0.980 6.980 16 C -0.745 4.745 17 C -0.138 4.138 18 C -0.022 4.022 19 C -0.667 4.667 20 H 0.069 0.931 21 C -0.234 4.234 22 N -0.572 5.572 23 Si 0.939 3.061 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.206 1.206 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.150 0.850 31 H 0.137 0.863 32 H 0.158 0.842 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.261 0.739 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.017 0.983 43 H 0.019 0.981 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.543 -21.125 -2.115 24.659 hybrid contribution -1.221 -0.855 0.203 1.505 sum -13.764 -21.980 -1.911 26.005 Atomic orbital electron populations 1.20839 0.89313 1.03716 1.03095 1.20185 0.97436 0.92695 0.97958 1.21174 0.93722 0.98711 1.02067 1.20826 0.94712 0.97519 0.99294 1.20725 0.95291 0.94041 1.03608 1.20915 0.94020 0.95745 0.97720 1.20760 0.92629 0.98459 1.01908 1.21108 0.91601 0.95492 1.03330 1.22737 0.98302 0.92913 1.02930 1.20288 0.90122 0.99415 0.82571 0.88395 1.55430 1.50010 1.64780 1.15217 1.04232 0.73771 0.76354 0.73061 1.93554 1.60104 1.77842 1.65673 1.93538 1.84510 1.86988 1.33009 1.30580 1.09892 1.20358 1.13642 1.21178 0.95647 0.95238 1.01704 1.19116 0.95912 0.92122 0.95065 1.22582 1.01386 0.95711 1.47018 0.93061 1.27414 1.02631 1.00397 0.92967 1.70892 1.04795 1.38412 1.43148 0.82929 0.72263 0.73555 0.77381 1.19704 1.19489 1.20557 0.90400 0.91011 0.90229 0.85012 0.86292 0.84171 0.88575 0.89096 0.88599 0.89213 0.73885 0.83792 0.83849 0.91492 0.91579 0.98272 0.98129 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 71.24 0.71 -0.53 16 2 C -0.08 -1.35 5.88 -19.89 -0.12 -1.47 16 3 C -0.14 -2.65 9.70 22.24 0.22 -2.44 16 4 C -0.10 -2.21 10.03 22.25 0.22 -1.99 16 5 C -0.13 -2.65 5.78 -19.58 -0.11 -2.76 16 6 C -0.08 -1.40 6.14 -19.54 -0.12 -1.52 16 7 C -0.12 -1.86 9.70 22.30 0.22 -1.64 16 8 C -0.08 -0.99 6.77 30.52 0.21 -0.78 16 9 C -0.13 -1.97 6.78 31.51 0.21 -1.75 16 10 C 0.18 3.51 3.34 44.92 0.15 3.66 16 11 H 0.10 1.87 7.67 -2.39 -0.02 1.85 16 12 N -1.09 -22.72 5.32 -169.72 -0.90 -23.63 16 13 S 2.63 75.13 5.32 -56.49 -0.30 74.83 16 14 O -0.98 -33.05 17.80 -127.65 -2.27 -35.32 16 15 O -0.99 -34.45 18.08 -127.65 -2.31 -36.75 16 16 C -0.61 -18.60 6.05 71.98 0.44 -18.17 16 17 C -0.10 -4.06 5.16 30.60 0.16 -3.90 16 18 C 0.02 0.83 4.28 29.85 0.13 0.95 16 19 C -0.63 -36.44 9.11 25.60 0.23 -36.21 16 20 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 21 C -0.04 -2.12 5.46 84.65 0.46 -1.66 16 22 N -0.94 -57.80 13.65 21.45 0.29 -57.51 16 23 Si 1.12 50.74 29.90 68.60 2.05 52.80 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 27 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 29 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 30 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.12 2.50 8.06 -2.91 -0.02 2.48 16 32 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 33 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.09 1.38 8.08 -2.39 -0.02 1.36 16 37 H 0.42 7.45 8.92 -96.74 -0.86 6.59 16 38 H 0.14 3.90 8.14 -2.39 -0.02 3.88 16 39 H 0.14 3.79 7.93 -2.39 -0.02 3.77 16 40 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.00 -0.05 8.01 -2.39 -0.02 -0.07 16 43 H 0.00 0.02 8.01 -2.39 -0.02 0.00 16 44 H 0.26 15.93 7.22 -92.71 -0.67 15.26 16 Total: -1.00 -76.69 376.51 -0.21 -76.90 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.23 Total: 18.88 kcal Atomic # 6 Polarization: -73.20 SS G_CDS: 3.01 Total: -70.19 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -0.61 Total: -81.14 kcal Atomic # 8 Polarization: -67.49 SS G_CDS: -4.58 Total: -72.07 kcal Atomic # 14 Polarization: 50.74 SS G_CDS: 2.05 Total: 52.80 kcal Atomic # 16 Polarization: 75.13 SS G_CDS: -0.30 Total: 74.83 kcal Total: -76.69 -0.21 -76.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264569493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.812 kcal (2) G-P(sol) polarization free energy of solvation -76.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds