Wall clock time and date at job start Tue Mar 31 2020 13:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 112.84810 * 2 1 4 4 C 1.38235 * 119.99966 * 50.33512 * 3 2 1 5 5 C 1.38226 * 120.00050 * 179.72217 * 4 3 2 6 6 C 1.38242 * 120.00013 * 0.26068 * 5 4 3 7 7 C 1.38231 * 119.99689 * 0.02562 * 6 5 4 8 8 C 1.38236 * 120.00574 * 359.97438 * 7 6 5 9 9 C 1.53777 * 113.61274 * 131.19723 * 2 1 3 10 10 C 1.53961 * 87.02056 * 89.23233 * 9 2 1 11 11 N 1.46499 * 113.53299 * 270.81089 * 10 9 2 12 12 S 1.65606 * 119.99869 * 244.80882 * 11 10 9 13 13 O 1.42102 * 104.27593 * 181.07424 * 12 11 10 14 14 O 1.42102 * 104.27447 * 308.92555 * 12 11 10 15 15 C 1.81395 * 104.44901 * 64.99897 * 12 11 10 16 16 C 1.53007 * 109.46840 * 179.97438 * 15 12 11 17 17 C 1.50701 * 109.47159 * 179.97438 * 16 15 12 18 18 H 1.08002 * 119.99917 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00050 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00114 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99731 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47607 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47185 * 120.00039 * 21 19 17 24 24 H 1.48506 * 109.47178 * 239.99534 * 21 19 17 25 25 C 1.53779 * 113.61413 * 228.80514 * 2 1 3 26 26 H 1.08997 * 109.47387 * 77.60958 * 1 2 3 27 27 H 1.09003 * 109.46920 * 197.60760 * 1 2 3 28 28 H 1.08997 * 109.47479 * 317.60721 * 1 2 3 29 29 H 1.08000 * 119.99641 * 359.97438 * 4 3 2 30 30 H 1.08002 * 120.00497 * 180.27362 * 5 4 3 31 31 H 1.07998 * 119.99967 * 180.02562 * 6 5 4 32 32 H 1.08001 * 120.00203 * 179.97438 * 7 6 5 33 33 H 1.07997 * 120.00671 * 179.97438 * 8 7 6 34 34 H 1.08997 * 113.61354 * 203.74493 * 9 2 1 35 35 H 1.08992 * 113.61843 * 334.65093 * 9 2 1 36 36 H 1.08998 * 113.74419 * 139.94257 * 10 9 2 37 37 H 0.96994 * 120.00357 * 64.80744 * 11 10 9 38 38 H 1.08999 * 109.47142 * 299.99743 * 15 12 11 39 39 H 1.08993 * 109.47503 * 60.00654 * 15 12 11 40 40 H 1.08996 * 109.47193 * 300.00593 * 16 15 12 41 41 H 1.09003 * 109.46983 * 60.00188 * 16 15 12 42 42 H 0.96993 * 120.00006 * 180.02562 * 20 19 17 43 43 H 1.09005 * 113.61762 * 25.34545 * 25 2 1 44 44 H 1.09005 * 113.61381 * 156.25326 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1151 1.3888 0.0000 4 6 1.6793 2.3224 0.9216 5 6 2.2201 3.5945 0.9253 6 6 3.1930 3.9347 0.0039 7 6 3.6245 3.0028 -0.9214 8 6 3.0837 1.7307 -0.9252 9 6 2.1459 -0.9281 1.0602 10 6 2.0950 -2.0420 -0.0014 11 7 0.8376 -2.7938 -0.0005 12 16 0.8345 -4.4017 0.3957 13 8 -0.5256 -4.7921 0.2655 14 8 1.8417 -4.9683 -0.4313 15 6 1.3440 -4.4399 2.1362 16 6 1.3794 -5.8892 2.6255 17 6 1.8032 -5.9211 4.0713 18 1 2.0247 -4.9998 4.5896 19 6 1.9082 -7.1264 4.7325 20 7 1.6390 -8.2484 4.1014 21 14 2.4329 -7.1658 6.5249 22 1 2.6764 -5.7801 7.0000 23 1 1.3597 -7.7881 7.3413 24 1 3.6802 -7.9607 6.6582 25 6 2.1460 -0.9280 -1.0603 26 1 -0.3634 0.2205 -1.0037 27 1 -0.3633 -0.9796 0.3109 28 1 -0.3634 0.7589 0.6928 29 1 0.9192 2.0567 1.6413 30 1 1.8829 4.3226 1.6481 31 1 3.6158 4.9284 0.0071 32 1 4.3843 3.2686 -1.6415 33 1 3.4206 1.0027 -1.6484 34 1 3.1584 -0.6478 1.3506 35 1 1.4939 -1.1080 1.9149 36 1 2.9737 -2.6869 -0.0033 37 1 0.0069 -2.3498 -0.2320 38 1 2.3358 -3.9986 2.2343 39 1 0.6326 -3.8719 2.7356 40 1 0.3874 -6.3302 2.5274 41 1 2.0906 -6.4577 2.0262 42 1 1.7125 -9.0962 4.5666 43 1 1.4939 -1.1080 -1.9150 44 1 3.1585 -0.6477 -1.3506 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264713070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:10 Heat of formation + Delta-G solvation = -32.323316 kcal Electronic energy + Delta-G solvation = -25045.131563 eV Core-core repulsion = 21475.962445 eV Total energy + Delta-G solvation = -3569.169118 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.85424 -38.51166 -36.56464 -35.43555 -33.89181 -33.47275 -31.31351 -31.16239 -30.57610 -29.01135 -26.10398 -25.55169 -23.92997 -22.55824 -21.65765 -21.56615 -19.14645 -18.96448 -17.76723 -17.12511 -16.47984 -16.09442 -15.49995 -15.36117 -15.23656 -14.91976 -14.58763 -14.43667 -13.94266 -13.76277 -13.56836 -13.36178 -13.12772 -12.78199 -12.51786 -12.32214 -12.26919 -11.79655 -11.74087 -11.59739 -11.52903 -11.42321 -11.39876 -11.09665 -10.99341 -10.95293 -10.54306 -10.41576 -10.38273 -10.24586 -9.76943 -9.43822 -9.14546 -9.02883 -8.86077 -8.50915 -6.12799 -4.18197 0.79078 1.13545 1.17596 3.10251 3.24993 3.32382 3.35685 3.54485 4.17882 4.26587 4.30892 4.37716 4.44694 4.61670 4.70230 4.74598 4.76712 4.87760 4.88887 5.17123 5.22480 5.23214 5.29999 5.31825 5.50346 5.51213 5.61825 5.67642 5.69800 5.77034 5.79101 5.81897 5.90053 5.91238 6.01647 6.24102 6.29079 6.33447 6.43745 6.49497 6.78006 7.10138 7.30433 7.36403 7.80585 8.17446 8.85597 9.46672 10.98335 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016001 B = 0.002975 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.518385 B = 9410.427739 C =10514.330074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 C -0.058 4.058 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.129 4.129 7 C -0.119 4.119 8 C -0.121 4.121 9 C -0.144 4.144 10 C 0.128 3.872 11 N -1.110 6.110 12 S 2.590 3.410 13 O -0.968 6.968 14 O -0.966 6.966 15 C -0.587 4.587 16 C 0.027 3.973 17 C -0.519 4.519 18 H 0.062 0.938 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.138 4.138 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.412 0.588 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.264 0.736 43 H 0.079 0.921 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.479 23.716 -9.314 25.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.048 4.048 3 C -0.058 4.058 4 C -0.133 4.133 5 C -0.137 4.137 6 C -0.147 4.147 7 C -0.137 4.137 8 C -0.139 4.139 9 C -0.183 4.183 10 C 0.020 3.980 11 N -0.869 5.869 12 S 2.687 3.313 13 O -0.959 6.959 14 O -0.956 6.956 15 C -0.721 4.721 16 C -0.012 4.012 17 C -0.558 4.558 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.177 4.177 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.250 0.750 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.385 22.718 -9.897 24.819 hybrid contribution 0.147 0.585 1.495 1.612 sum 1.532 23.303 -8.401 24.818 Atomic orbital electron populations 1.21856 0.92445 1.02624 1.02485 1.20786 0.95612 0.90277 0.98120 1.19694 0.96126 0.94707 0.95317 1.21021 1.00193 0.93187 0.98887 1.21142 0.97154 0.96555 0.98889 1.21134 0.97982 0.99471 0.96128 1.21147 0.99926 0.93723 0.98917 1.21188 0.97062 0.96618 0.99011 1.23677 1.02166 0.95227 0.97270 1.21575 0.86792 0.93013 0.96664 1.55963 1.14314 1.30725 1.85855 1.05654 0.74475 0.72271 0.78851 1.93554 1.34827 1.80286 1.87188 1.93544 1.61153 1.75693 1.65219 1.30448 1.11000 1.10483 1.20148 1.18969 0.98958 0.84811 0.98424 1.21041 1.46771 0.92988 0.95032 0.91983 1.25071 0.95195 0.95581 0.98681 1.69963 1.48281 0.97779 1.36849 0.86422 0.78331 0.78190 0.84387 1.19638 1.20815 1.20807 1.23531 1.02203 0.94875 0.97100 0.91929 0.91129 0.91791 0.86068 0.86272 0.86403 0.86242 0.85570 0.88794 0.89982 0.87367 0.75031 0.86222 0.86128 0.94877 0.94837 0.92588 0.90265 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.68 37.16 0.32 -0.81 16 2 C -0.05 -0.42 1.17 -154.85 -0.18 -0.60 16 3 C -0.06 -0.52 5.02 -104.62 -0.53 -1.05 16 4 C -0.11 -1.01 9.15 -39.59 -0.36 -1.37 16 5 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 6 C -0.13 -1.01 10.05 -39.58 -0.40 -1.41 16 7 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 8 C -0.12 -1.03 9.19 -39.58 -0.36 -1.39 16 9 C -0.14 -1.37 6.99 -25.83 -0.18 -1.56 16 10 C 0.13 1.39 4.40 -67.02 -0.30 1.10 16 11 N -1.11 -13.84 5.28 -4.12 -0.02 -13.86 16 12 S 2.59 45.19 5.43 -107.50 -0.58 44.60 16 13 O -0.97 -19.81 18.08 -57.54 -1.04 -20.85 16 14 O -0.97 -19.74 17.56 -57.54 -1.01 -20.75 16 15 C -0.59 -10.93 6.01 37.16 0.22 -10.71 16 16 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 17 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 21 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C -0.14 -1.23 6.46 -25.92 -0.17 -1.40 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.60 4.95 -51.93 -0.26 0.34 16 28 H 0.06 0.49 6.71 -51.93 -0.35 0.14 16 29 H 0.12 0.95 7.15 -52.49 -0.38 0.57 16 30 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 32 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 33 H 0.13 0.91 5.80 -52.49 -0.30 0.61 16 34 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 35 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 36 H 0.11 1.21 7.75 -51.93 -0.40 0.80 16 37 H 0.41 4.43 5.81 -34.47 -0.20 4.23 16 38 H 0.12 1.98 8.14 -51.92 -0.42 1.56 16 39 H 0.12 2.01 8.14 -51.93 -0.42 1.59 16 40 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 44 H 0.10 0.74 6.01 -51.93 -0.31 0.43 16 LS Contribution 366.66 15.07 5.53 5.53 Total: -1.00 -34.90 366.66 -11.07 -45.98 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.38 Total: 3.35 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: -3.27 Total: -34.39 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.71 Total: -39.57 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -2.05 Total: -41.60 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 45.19 SS G_CDS: -0.58 Total: 44.60 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.90 -11.07 -45.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264713070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.654 kcal (2) G-P(sol) polarization free energy of solvation -34.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds