Wall clock time and date at job start Tue Mar 31 2020 13:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 112.84810 * 2 1 4 4 C 1.38235 * 119.99966 * 50.33512 * 3 2 1 5 5 C 1.38226 * 120.00050 * 179.72217 * 4 3 2 6 6 C 1.38242 * 120.00013 * 0.26068 * 5 4 3 7 7 C 1.38231 * 119.99689 * 0.02562 * 6 5 4 8 8 C 1.38236 * 120.00574 * 359.97438 * 7 6 5 9 9 C 1.53777 * 113.61274 * 131.19723 * 2 1 3 10 10 C 1.53961 * 87.02056 * 89.23233 * 9 2 1 11 11 N 1.46499 * 113.53299 * 270.81089 * 10 9 2 12 12 S 1.65606 * 119.99869 * 244.80882 * 11 10 9 13 13 O 1.42102 * 104.27593 * 181.07424 * 12 11 10 14 14 O 1.42102 * 104.27447 * 308.92555 * 12 11 10 15 15 C 1.81395 * 104.44901 * 64.99897 * 12 11 10 16 16 C 1.53007 * 109.46840 * 179.97438 * 15 12 11 17 17 C 1.50701 * 109.47159 * 179.97438 * 16 15 12 18 18 H 1.08002 * 119.99917 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00050 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00114 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99731 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47607 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47185 * 120.00039 * 21 19 17 24 24 H 1.48506 * 109.47178 * 239.99534 * 21 19 17 25 25 C 1.53779 * 113.61413 * 228.80514 * 2 1 3 26 26 H 1.08997 * 109.47387 * 77.60958 * 1 2 3 27 27 H 1.09003 * 109.46920 * 197.60760 * 1 2 3 28 28 H 1.08997 * 109.47479 * 317.60721 * 1 2 3 29 29 H 1.08000 * 119.99641 * 359.97438 * 4 3 2 30 30 H 1.08002 * 120.00497 * 180.27362 * 5 4 3 31 31 H 1.07998 * 119.99967 * 180.02562 * 6 5 4 32 32 H 1.08001 * 120.00203 * 179.97438 * 7 6 5 33 33 H 1.07997 * 120.00671 * 179.97438 * 8 7 6 34 34 H 1.08997 * 113.61354 * 203.74493 * 9 2 1 35 35 H 1.08992 * 113.61843 * 334.65093 * 9 2 1 36 36 H 1.08998 * 113.74419 * 139.94257 * 10 9 2 37 37 H 0.96994 * 120.00357 * 64.80744 * 11 10 9 38 38 H 1.08999 * 109.47142 * 299.99743 * 15 12 11 39 39 H 1.08993 * 109.47503 * 60.00654 * 15 12 11 40 40 H 1.08996 * 109.47193 * 300.00593 * 16 15 12 41 41 H 1.09003 * 109.46983 * 60.00188 * 16 15 12 42 42 H 0.96993 * 120.00006 * 180.02562 * 20 19 17 43 43 H 1.09005 * 113.61762 * 25.34545 * 25 2 1 44 44 H 1.09005 * 113.61381 * 156.25326 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1151 1.3888 0.0000 4 6 1.6793 2.3224 0.9216 5 6 2.2201 3.5945 0.9253 6 6 3.1930 3.9347 0.0039 7 6 3.6245 3.0028 -0.9214 8 6 3.0837 1.7307 -0.9252 9 6 2.1459 -0.9281 1.0602 10 6 2.0950 -2.0420 -0.0014 11 7 0.8376 -2.7938 -0.0005 12 16 0.8345 -4.4017 0.3957 13 8 -0.5256 -4.7921 0.2655 14 8 1.8417 -4.9683 -0.4313 15 6 1.3440 -4.4399 2.1362 16 6 1.3794 -5.8892 2.6255 17 6 1.8032 -5.9211 4.0713 18 1 2.0247 -4.9998 4.5896 19 6 1.9082 -7.1264 4.7325 20 7 1.6390 -8.2484 4.1014 21 14 2.4329 -7.1658 6.5249 22 1 2.6764 -5.7801 7.0000 23 1 1.3597 -7.7881 7.3413 24 1 3.6802 -7.9607 6.6582 25 6 2.1460 -0.9280 -1.0603 26 1 -0.3634 0.2205 -1.0037 27 1 -0.3633 -0.9796 0.3109 28 1 -0.3634 0.7589 0.6928 29 1 0.9192 2.0567 1.6413 30 1 1.8829 4.3226 1.6481 31 1 3.6158 4.9284 0.0071 32 1 4.3843 3.2686 -1.6415 33 1 3.4206 1.0027 -1.6484 34 1 3.1584 -0.6478 1.3506 35 1 1.4939 -1.1080 1.9149 36 1 2.9737 -2.6869 -0.0033 37 1 0.0069 -2.3498 -0.2320 38 1 2.3358 -3.9986 2.2343 39 1 0.6326 -3.8719 2.7356 40 1 0.3874 -6.3302 2.5274 41 1 2.0906 -6.4577 2.0262 42 1 1.7125 -9.0962 4.5666 43 1 1.4939 -1.1080 -1.9150 44 1 3.1585 -0.6477 -1.3506 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264713070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:10 Heat of formation + Delta-G solvation = -54.741892 kcal Electronic energy + Delta-G solvation = -25046.103705 eV Core-core repulsion = 21475.962445 eV Total energy + Delta-G solvation = -3570.141260 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.56358 -39.16818 -38.12112 -36.99751 -35.88058 -34.39888 -33.11040 -31.91768 -31.30724 -29.66274 -27.59919 -26.75441 -24.63813 -23.56235 -23.15543 -22.31956 -20.44575 -19.70491 -19.19069 -18.41774 -17.75363 -17.21486 -17.00113 -16.52050 -16.30188 -16.10337 -15.79447 -15.19111 -15.12069 -14.59778 -14.48775 -14.36811 -14.25593 -13.87523 -13.70974 -13.46469 -13.38362 -13.19506 -13.10144 -12.94607 -12.91597 -12.76631 -12.47516 -12.30280 -12.23657 -12.11192 -12.01709 -11.76955 -11.65415 -11.28490 -11.14592 -10.90129 -10.64784 -10.26993 -9.73636 -9.48225 -8.25392 -6.39006 -0.66176 0.53581 0.58427 1.41531 1.41832 1.55210 1.83885 2.38523 2.82144 2.94394 3.08348 3.28017 3.51537 3.59627 3.76413 3.86233 3.95722 4.09679 4.15427 4.22961 4.25473 4.32138 4.37748 4.58377 4.64056 4.73164 4.78171 4.83761 4.85396 4.96572 5.01912 5.16425 5.18030 5.24424 5.25564 5.29292 5.30309 5.33920 5.49006 5.69374 5.69854 5.71498 5.81776 6.07473 6.15685 6.21114 6.75245 7.31228 8.87186 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016001 B = 0.002975 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.518385 B = 9410.427739 C =10514.330074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.041 4.041 3 C -0.069 4.069 4 C -0.127 4.127 5 C -0.129 4.129 6 C -0.137 4.137 7 C -0.127 4.127 8 C -0.132 4.132 9 C -0.142 4.142 10 C 0.111 3.889 11 N -1.090 6.090 12 S 2.618 3.382 13 O -1.000 7.000 14 O -0.997 6.997 15 C -0.585 4.585 16 C 0.020 3.980 17 C -0.536 4.536 18 H 0.076 0.924 19 C -0.005 4.005 20 N -0.935 5.935 21 Si 0.973 3.027 22 H -0.255 1.255 23 H -0.279 1.279 24 H -0.279 1.279 25 C -0.133 4.133 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.126 0.874 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.423 0.577 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.005 0.995 41 H 0.007 0.993 42 H 0.267 0.733 43 H 0.081 0.919 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.196 26.322 -8.684 27.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.041 4.041 3 C -0.069 4.069 4 C -0.145 4.145 5 C -0.147 4.147 6 C -0.155 4.155 7 C -0.145 4.145 8 C -0.150 4.150 9 C -0.181 4.181 10 C 0.003 3.997 11 N -0.853 5.853 12 S 2.715 3.285 13 O -0.991 6.991 14 O -0.987 6.987 15 C -0.717 4.717 16 C -0.019 4.019 17 C -0.575 4.575 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.575 5.575 21 Si 0.797 3.203 22 H -0.178 1.178 23 H -0.205 1.205 24 H -0.204 1.204 25 C -0.172 4.172 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.144 0.856 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.264 0.736 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.024 0.976 41 H 0.025 0.975 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.096 25.341 -9.263 27.062 hybrid contribution -0.064 -0.127 1.228 1.236 sum 2.033 25.214 -8.035 26.541 Atomic orbital electron populations 1.21898 0.92256 1.02584 1.03036 1.20716 0.95741 0.90225 0.97429 1.19745 0.96594 0.94720 0.95815 1.21188 1.00604 0.93574 0.99170 1.21404 0.97212 0.96741 0.99333 1.21433 0.97819 1.00362 0.95857 1.21429 1.00219 0.93605 0.99281 1.21390 0.97105 0.97232 0.99233 1.23686 1.02771 0.94536 0.97094 1.21870 0.85544 0.93455 0.98841 1.55459 1.15818 1.28887 1.85177 1.04523 0.72990 0.73157 0.77848 1.93503 1.36413 1.81783 1.87355 1.93503 1.62045 1.77338 1.65794 1.30337 1.13310 1.06439 1.21633 1.18827 0.96515 0.88651 0.97922 1.21554 1.46163 0.93632 0.96127 0.90540 1.26114 0.95201 0.95211 1.03778 1.70108 1.49773 0.98572 1.39052 0.85274 0.77806 0.78961 0.78265 1.17849 1.20477 1.20432 1.23570 1.03284 0.93574 0.96736 0.91415 0.91472 0.91155 0.85575 0.84840 0.84682 0.84598 0.84610 0.88062 0.89943 0.87695 0.73620 0.83908 0.83909 0.97634 0.97512 0.92436 0.90033 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.68 71.98 0.62 -1.43 16 2 C -0.04 -0.63 1.17 -52.40 -0.06 -0.70 16 3 C -0.07 -1.10 5.02 -19.86 -0.10 -1.20 16 4 C -0.13 -2.00 9.15 22.27 0.20 -1.80 16 5 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 6 C -0.14 -1.86 10.05 22.27 0.22 -1.63 16 7 C -0.13 -1.76 10.05 22.27 0.22 -1.53 16 8 C -0.13 -1.97 9.19 22.27 0.20 -1.77 16 9 C -0.14 -2.40 6.99 31.18 0.22 -2.19 16 10 C 0.11 2.21 4.40 45.58 0.20 2.41 16 11 N -1.09 -25.81 5.28 -166.95 -0.88 -26.69 16 12 S 2.62 91.28 5.43 -56.49 -0.31 90.97 16 13 O -1.00 -41.34 18.08 -127.65 -2.31 -43.65 16 14 O -1.00 -41.13 17.56 -127.65 -2.24 -43.37 16 15 C -0.58 -21.51 6.01 71.98 0.43 -21.07 16 16 C 0.02 1.02 4.98 29.85 0.15 1.17 16 17 C -0.54 -29.45 9.11 25.60 0.23 -29.22 16 18 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 19 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 20 N -0.94 -56.93 13.29 21.45 0.28 -56.64 16 21 Si 0.97 43.14 29.54 68.60 2.03 45.16 16 22 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 25 C -0.13 -2.09 6.46 31.12 0.20 -1.89 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 1.01 4.95 -2.39 -0.01 1.00 16 28 H 0.07 0.94 6.71 -2.39 -0.02 0.92 16 29 H 0.13 1.75 7.15 -2.91 -0.02 1.73 16 30 H 0.13 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 32 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 33 H 0.14 1.65 5.80 -2.91 -0.02 1.63 16 34 H 0.10 1.59 8.09 -2.39 -0.02 1.57 16 35 H 0.08 1.40 8.10 -2.39 -0.02 1.38 16 36 H 0.11 2.20 7.75 -2.39 -0.02 2.18 16 37 H 0.42 8.46 5.81 -96.75 -0.56 7.90 16 38 H 0.14 4.53 8.14 -2.39 -0.02 4.51 16 39 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16 40 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 43 H 0.08 1.27 8.10 -2.38 -0.02 1.25 16 44 H 0.11 1.45 6.01 -2.38 -0.01 1.44 16 Total: -1.00 -75.79 366.66 0.45 -75.33 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.44 Total: 21.16 kcal Atomic # 6 Polarization: -65.72 SS G_CDS: 3.44 Total: -62.28 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -0.60 Total: -83.33 kcal Atomic # 8 Polarization: -82.47 SS G_CDS: -4.55 Total: -87.02 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 91.28 SS G_CDS: -0.31 Total: 90.97 kcal Total: -75.79 0.45 -75.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264713070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.592 kcal (2) G-P(sol) polarization free energy of solvation -75.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds