Wall clock time and date at job start Tue Mar 31 2020 14:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38257 * 119.99674 * 2 1 4 4 C 1.38216 * 119.99537 * 180.02562 * 3 2 1 5 5 C 1.38248 * 120.00528 * 359.97438 * 4 3 2 6 6 C 1.38215 * 119.99785 * 359.81526 * 5 4 3 7 7 C 1.38216 * 120.00288 * 180.02562 * 2 1 3 8 8 C 1.50696 * 119.99637 * 359.97438 * 7 2 1 9 9 H 1.09004 * 110.89117 * 358.24345 * 8 7 2 10 10 C 1.55164 * 111.03695 * 122.14896 * 8 7 2 11 11 C 1.54334 * 103.01782 * 153.39377 * 10 8 7 12 12 N 1.47021 * 107.27035 * 338.13800 * 11 10 8 13 13 S 1.65601 * 125.65227 * 178.85076 * 12 11 10 14 14 O 1.42095 * 104.27612 * 25.76380 * 13 12 11 15 15 O 1.42101 * 104.27644 * 153.62544 * 13 12 11 16 16 C 1.81399 * 104.44749 * 269.69584 * 13 12 11 17 17 C 1.53004 * 109.47107 * 180.02562 * 16 13 12 18 18 C 1.50700 * 109.47249 * 180.02562 * 17 16 13 19 19 H 1.08006 * 120.00045 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99991 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00074 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00068 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47187 * 59.99321 * 22 20 18 24 24 H 1.48494 * 109.47305 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47127 * 299.99944 * 22 20 18 26 26 C 1.47430 * 108.69842 * 358.58879 * 12 11 10 27 27 H 1.08998 * 109.47256 * 264.49629 * 1 2 3 28 28 H 1.08994 * 109.47560 * 24.50502 * 1 2 3 29 29 H 1.09006 * 109.46936 * 144.50082 * 1 2 3 30 30 H 1.07991 * 120.00356 * 359.97262 * 3 2 1 31 31 H 1.08009 * 119.99677 * 179.97438 * 4 3 2 32 32 H 1.08003 * 120.00302 * 179.97438 * 5 4 3 33 33 H 1.07999 * 120.00128 * 180.23275 * 6 5 4 34 34 H 1.08993 * 110.71978 * 271.95238 * 10 8 7 35 35 H 1.09000 * 110.71829 * 35.22869 * 10 8 7 36 36 H 1.09008 * 109.98802 * 218.66587 * 11 10 8 37 37 H 1.09001 * 109.78259 * 97.49931 * 11 10 8 38 38 H 1.09002 * 109.47505 * 299.99907 * 16 13 12 39 39 H 1.08995 * 109.47297 * 59.99876 * 16 13 12 40 40 H 1.08998 * 109.46964 * 299.99806 * 17 16 13 41 41 H 1.08995 * 109.47179 * 59.99760 * 17 16 13 42 42 H 0.96995 * 120.00488 * 180.02562 * 21 20 18 43 43 H 1.09007 * 110.36244 * 143.19319 * 26 12 11 44 44 H 1.08994 * 110.36794 * 265.51235 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1973 -0.0005 5 6 4.2716 0.0001 -0.0005 6 6 3.5806 -1.1969 0.0039 7 6 2.1981 -1.1969 -0.0005 8 6 1.4446 -2.5020 -0.0005 9 1 0.3687 -2.3297 0.0311 10 6 1.8330 -3.3694 -1.2270 11 6 1.5643 -4.8073 -0.7350 12 7 1.5918 -4.7781 0.7346 13 16 1.3303 -6.0747 1.7310 14 8 1.6912 -7.2006 0.9428 15 8 2.0415 -5.7533 2.9184 16 6 -0.4579 -6.0579 2.0356 17 6 -0.8294 -7.2227 2.9556 18 6 -2.3151 -7.2091 3.2083 19 1 -2.9325 -6.4458 2.7580 20 6 -2.8860 -8.1705 4.0150 21 7 -2.1341 -9.0996 4.5636 22 14 -4.7273 -8.1533 4.3288 23 1 -5.4505 -8.2913 3.0391 24 1 -5.0879 -9.2837 5.2215 25 1 -5.1075 -6.8712 4.9745 26 6 1.8972 -3.4044 1.1744 27 1 -0.3634 -0.0986 1.0229 28 1 -0.3634 0.9350 -0.4262 29 1 -0.3633 -0.8367 -0.5968 30 1 1.6582 2.1326 -0.0004 31 1 4.1203 2.1327 -0.0010 32 1 5.3517 0.0001 -0.0014 33 1 4.1206 -2.1321 0.0077 34 1 1.2042 -3.1288 -2.0842 35 1 2.8872 -3.2404 -1.4723 36 1 2.3379 -5.4791 -1.1070 37 1 0.5851 -5.1387 -1.0809 38 1 -0.7368 -5.1172 2.5104 39 1 -0.9887 -6.1585 1.0890 40 1 -0.5506 -8.1635 2.4813 41 1 -0.2986 -7.1216 3.9022 42 1 -2.5357 -9.7762 5.1308 43 1 1.3364 -3.1616 2.0771 44 1 2.9670 -3.2911 1.3495 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264730875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:21 Heat of formation + Delta-G solvation = -82.254232 kcal Electronic energy + Delta-G solvation = -25077.398901 eV Core-core repulsion = 21506.064616 eV Total energy + Delta-G solvation = -3571.334285 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.92402 -38.83751 -38.22096 -37.05843 -35.91075 -34.04652 -33.14403 -33.11428 -30.76657 -29.28006 -27.62048 -27.53817 -24.53029 -23.64690 -22.96912 -22.16221 -20.91227 -19.95317 -19.12851 -18.34414 -17.84226 -17.11353 -17.06014 -16.59039 -16.48461 -15.83947 -15.60943 -15.24213 -14.75789 -14.65222 -14.51268 -14.40777 -14.23147 -13.91757 -13.76123 -13.71170 -13.27517 -13.21121 -13.15343 -13.04048 -12.91503 -12.82242 -12.73346 -12.39783 -12.25570 -12.19136 -12.17743 -12.04051 -11.76717 -11.60685 -11.33368 -11.19474 -10.64996 -9.94247 -9.62575 -9.38668 -8.26828 -6.41481 -0.77847 0.47710 0.54552 1.40415 1.44124 1.52347 1.72002 2.37595 2.81592 2.84503 3.05958 3.07706 3.51697 3.77906 3.80743 3.99708 4.07000 4.09455 4.12926 4.26055 4.28684 4.34732 4.45292 4.53027 4.56584 4.72272 4.73039 4.83919 4.86939 4.90681 4.96127 5.02505 5.05429 5.09556 5.22988 5.24499 5.25809 5.32150 5.39307 5.44889 5.66790 5.67201 5.69157 5.82385 6.04558 6.19308 6.71929 7.28837 8.85367 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017789 B = 0.002986 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.635707 B = 9374.736236 C =10252.213574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.089 4.089 3 C -0.129 4.129 4 C -0.126 4.126 5 C -0.134 4.134 6 C -0.123 4.123 7 C -0.082 4.082 8 C -0.059 4.059 9 H 0.111 0.889 10 C -0.108 4.108 11 C 0.107 3.893 12 N -1.013 6.013 13 S 2.629 3.371 14 O -0.992 6.992 15 O -0.994 6.994 16 C -0.585 4.585 17 C 0.021 3.979 18 C -0.541 4.541 19 H 0.077 0.923 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.975 3.025 23 H -0.262 1.262 24 H -0.284 1.284 25 H -0.262 1.262 26 C 0.121 3.879 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.006 0.994 41 H 0.005 0.995 42 H 0.268 0.732 43 H 0.076 0.924 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.661 22.798 -14.355 28.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.144 4.144 5 C -0.152 4.152 6 C -0.141 4.141 7 C -0.082 4.082 8 C -0.079 4.079 9 H 0.129 0.871 10 C -0.147 4.147 11 C -0.017 4.017 12 N -0.852 5.852 13 S 2.728 3.272 14 O -0.982 6.982 15 O -0.985 6.985 16 C -0.717 4.717 17 C -0.018 4.018 18 C -0.580 4.580 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.574 5.574 22 Si 0.798 3.202 23 H -0.187 1.187 24 H -0.210 1.210 25 H -0.187 1.187 26 C -0.004 4.004 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.124 0.876 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.024 0.976 41 H 0.024 0.976 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.361 21.965 -13.890 27.300 hybrid contribution -1.034 -0.382 0.576 1.244 sum 7.327 21.583 -13.314 26.396 Atomic orbital electron populations 1.20919 0.90179 1.03725 1.02912 1.20034 0.97002 0.92534 0.99289 1.21306 0.94615 0.97949 1.00830 1.21426 0.94573 0.98723 0.99648 1.21361 1.00761 0.92458 1.00652 1.21185 0.93904 0.98768 1.00220 1.19498 0.93588 0.93645 1.01519 1.21424 1.01139 0.90800 0.94521 0.87120 1.22741 1.03433 0.90940 0.97588 1.22016 1.02756 0.99418 0.77533 1.58480 1.86404 1.22955 1.17338 1.04257 0.78310 0.72188 0.72399 1.93486 1.83160 1.51395 1.70201 1.93491 1.71566 1.83971 1.49424 1.30367 1.22602 1.08528 1.10200 1.18820 0.98593 0.91262 0.93146 1.21490 0.92676 1.13485 1.30304 0.90507 1.26142 1.04177 0.94753 0.95187 1.70096 1.38173 1.16288 1.32891 0.85347 0.78090 0.78104 0.78617 1.18663 1.20979 1.18688 1.22244 1.01033 0.79110 0.97998 0.90949 0.90445 0.90475 0.84519 0.84395 0.84812 0.85799 0.87587 0.89929 0.91391 0.90050 0.84143 0.83920 0.97556 0.97644 0.92345 0.90514 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 9.22 71.23 0.66 -0.80 16 2 C -0.09 -1.38 5.88 -19.87 -0.12 -1.50 16 3 C -0.13 -1.85 9.68 22.27 0.22 -1.63 16 4 C -0.13 -1.76 10.05 22.27 0.22 -1.53 16 5 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 6 C -0.12 -2.09 8.29 22.27 0.18 -1.91 16 7 C -0.08 -1.39 5.00 -19.87 -0.10 -1.49 16 8 C -0.06 -0.99 3.00 -10.15 -0.03 -1.02 16 9 H 0.11 1.62 5.76 -2.39 -0.01 1.61 16 10 C -0.11 -1.62 6.36 31.79 0.20 -1.41 16 11 C 0.11 2.24 6.90 86.73 0.60 2.83 16 12 N -1.01 -27.27 3.62 -506.39 -1.83 -29.11 16 13 S 2.63 98.33 5.65 -56.49 -0.32 98.01 16 14 O -0.99 -42.81 17.60 -127.65 -2.25 -45.06 16 15 O -0.99 -43.39 17.61 -127.65 -2.25 -45.64 16 16 C -0.58 -22.48 6.12 71.98 0.44 -22.04 16 17 C 0.02 1.10 4.98 29.85 0.15 1.25 16 18 C -0.54 -30.12 9.11 25.60 0.23 -29.88 16 19 H 0.08 3.92 7.74 -2.91 -0.02 3.89 16 20 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 21 N -0.94 -57.31 13.29 21.45 0.28 -57.03 16 22 Si 0.98 43.22 29.54 68.60 2.03 45.25 16 23 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 26 C 0.12 2.78 6.30 86.85 0.55 3.32 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.08 0.73 8.05 -2.39 -0.02 0.71 16 29 H 0.08 0.84 6.47 -2.38 -0.02 0.83 16 30 H 0.14 1.41 8.06 -2.92 -0.02 1.38 16 31 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 32 H 0.13 1.56 8.06 -2.91 -0.02 1.53 16 33 H 0.12 2.01 7.02 -2.91 -0.02 1.99 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 1.17 7.07 -2.39 -0.02 1.15 16 36 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.14 4.74 8.14 -2.39 -0.02 4.72 16 39 H 0.14 4.76 8.14 -2.39 -0.02 4.74 16 40 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 43 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.07 1.60 6.77 -2.39 -0.02 1.58 16 Total: -1.00 -76.58 369.62 0.53 -76.05 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.98 Total: 14.94 kcal Atomic # 6 Polarization: -61.31 SS G_CDS: 3.89 Total: -57.42 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -1.55 Total: -86.13 kcal Atomic # 8 Polarization: -86.21 SS G_CDS: -4.49 Total: -90.70 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 98.33 SS G_CDS: -0.32 Total: 98.01 kcal Total: -76.58 0.53 -76.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264730875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.204 kcal (2) G-P(sol) polarization free energy of solvation -76.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds