Wall clock time and date at job start Tue Mar 31 2020 14:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38263 * 120.00340 * 2 1 4 4 C 1.38207 * 120.00101 * 180.20967 * 3 2 1 5 5 C 1.38257 * 120.00171 * 359.85910 * 4 3 2 6 6 C 1.38207 * 119.99946 * 359.95361 * 5 4 3 7 7 C 1.38222 * 120.00207 * 179.81708 * 2 1 3 8 8 C 1.50703 * 119.99591 * 359.97438 * 7 2 1 9 9 H 1.08989 * 110.88824 * 2.15953 * 8 7 2 10 10 C 1.55159 * 111.00134 * 238.27561 * 8 7 2 11 11 C 1.54324 * 102.94134 * 206.42598 * 10 8 7 12 12 N 1.47020 * 107.39983 * 22.11770 * 11 10 8 13 13 S 1.65607 * 125.64915 * 181.10210 * 12 11 10 14 14 O 1.42095 * 104.27758 * 206.09623 * 13 12 11 15 15 O 1.42104 * 104.27244 * 333.95537 * 13 12 11 16 16 C 1.81398 * 104.44868 * 90.02229 * 13 12 11 17 17 C 1.53001 * 109.47395 * 180.02562 * 16 13 12 18 18 C 1.50696 * 109.47323 * 180.02562 * 17 16 13 19 19 H 1.08000 * 120.00010 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99901 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00089 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00055 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47359 * 59.99804 * 22 20 18 24 24 H 1.48492 * 109.47129 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46721 * 299.99757 * 22 20 18 26 26 C 1.47743 * 108.53125 * 1.18235 * 12 11 10 27 27 H 1.09002 * 109.47367 * 270.18685 * 1 2 3 28 28 H 1.08997 * 109.47393 * 30.18641 * 1 2 3 29 29 H 1.09005 * 109.47495 * 150.18726 * 1 2 3 30 30 H 1.07999 * 119.99321 * 0.03902 * 3 2 1 31 31 H 1.07999 * 119.99705 * 179.82927 * 4 3 2 32 32 H 1.08000 * 120.00004 * 179.97438 * 5 4 3 33 33 H 1.08006 * 120.00017 * 180.02562 * 6 5 4 34 34 H 1.09004 * 110.72010 * 88.06387 * 10 8 7 35 35 H 1.08995 * 110.87585 * 324.86236 * 10 8 7 36 36 H 1.09002 * 109.88322 * 141.61300 * 11 10 8 37 37 H 1.09000 * 109.88025 * 262.62465 * 11 10 8 38 38 H 1.08999 * 109.47318 * 300.00373 * 16 13 12 39 39 H 1.09000 * 109.47370 * 60.00371 * 16 13 12 40 40 H 1.08999 * 109.47130 * 300.00412 * 17 16 13 41 41 H 1.09000 * 109.46622 * 59.99836 * 17 16 13 42 42 H 0.96996 * 120.00050 * 179.97438 * 21 20 18 43 43 H 1.09003 * 110.29227 * 216.94505 * 26 12 11 44 44 H 1.08996 * 110.53057 * 94.67717 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5803 1.1973 -0.0044 5 6 4.2716 -0.0001 -0.0058 6 6 3.5806 -1.1969 -0.0019 7 6 2.1980 -1.1970 0.0038 8 6 1.4445 -2.5021 0.0086 9 1 0.3690 -2.3300 -0.0300 10 6 1.8265 -3.3603 1.2435 11 6 1.5558 -4.8008 0.7604 12 7 1.5944 -4.7862 -0.7093 13 16 1.3360 -6.0919 -1.6946 14 8 2.0516 -5.7817 -2.8824 15 8 1.6937 -7.2106 -0.8947 16 6 -0.4510 -6.0774 -2.0058 17 6 -0.8199 -7.2511 -2.9154 18 6 -2.3044 -7.2386 -3.1744 19 1 -2.9229 -6.4702 -2.7347 20 6 -2.8730 -8.2084 -3.9728 21 7 -2.1199 -9.1445 -4.5079 22 14 -4.7130 -8.1925 -4.2946 23 1 -5.0890 -6.9173 -4.9562 24 1 -5.0710 -9.3318 -5.1772 25 1 -5.4418 -8.3156 -3.0065 26 6 1.9041 -3.4128 -1.1572 27 1 -0.3634 0.0034 1.0277 28 1 -0.3634 0.8883 -0.5167 29 1 -0.3634 -0.8917 -0.5109 30 1 1.6582 2.1326 0.0006 31 1 4.1203 2.1326 -0.0072 32 1 5.3516 -0.0001 -0.0097 33 1 4.1206 -2.1323 -0.0026 34 1 1.1928 -3.1138 2.0954 35 1 2.8786 -3.2298 1.4967 36 1 2.3244 -5.4713 1.1448 37 1 0.5739 -5.1280 1.1022 38 1 -0.9853 -6.1690 -1.0602 39 1 -0.7279 -5.1410 -2.4903 40 1 -0.2856 -7.1599 -3.8610 41 1 -0.5431 -8.1873 -2.4305 42 1 -2.5200 -9.8268 -5.0692 43 1 1.3483 -3.1768 -2.0647 44 1 2.9745 -3.2987 -1.3285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264730877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:25 Heat of formation + Delta-G solvation = -59.313377 kcal Electronic energy + Delta-G solvation = -25073.077782 eV Core-core repulsion = 21502.738287 eV Total energy + Delta-G solvation = -3570.339495 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.23138 -37.98951 -36.59873 -35.43346 -33.89200 -33.37879 -32.38910 -31.15866 -29.91665 -28.48146 -26.97106 -25.60298 -23.68018 -22.39995 -21.53201 -21.42230 -20.19664 -18.59304 -17.57810 -17.06894 -16.56033 -16.05730 -15.57285 -15.43556 -15.03513 -14.77451 -14.55638 -14.11547 -13.73376 -13.62429 -13.49003 -13.31999 -13.23298 -12.93628 -12.60756 -12.50321 -12.40350 -11.83497 -11.75753 -11.62612 -11.56084 -11.45275 -11.40385 -11.33278 -11.07079 -10.97231 -10.92636 -10.62044 -10.44146 -10.37654 -9.77210 -9.34755 -8.99846 -8.80268 -8.70018 -8.50492 -6.12667 -4.18471 0.72596 1.11337 1.16547 3.04550 3.26748 3.31573 3.33355 3.48612 4.23194 4.28608 4.37825 4.43277 4.49881 4.66694 4.69064 4.81404 4.86562 4.95273 5.04558 5.13589 5.22297 5.25054 5.37776 5.39860 5.44949 5.47320 5.57408 5.60548 5.64860 5.71458 5.74163 5.84085 5.87263 5.94234 5.99104 6.17265 6.28060 6.29865 6.45615 6.48533 6.48829 6.79217 7.29404 7.35657 7.79950 8.17142 8.84646 9.46178 10.98367 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.002983 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.391217 B = 9384.818369 C =10261.320872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.124 4.124 6 C -0.110 4.110 7 C -0.070 4.070 8 C -0.070 4.070 9 H 0.101 0.899 10 C -0.117 4.117 11 C 0.120 3.880 12 N -1.020 6.020 13 S 2.605 3.395 14 O -0.961 6.961 15 O -0.961 6.961 16 C -0.589 4.589 17 C 0.028 3.972 18 C -0.521 4.521 19 H 0.061 0.939 20 C 0.058 3.942 21 N -0.891 5.891 22 Si 0.901 3.099 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.132 3.868 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.266 0.734 43 H 0.077 0.923 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.914 20.467 12.736 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.079 4.079 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.142 4.142 6 C -0.128 4.128 7 C -0.071 4.071 8 C -0.090 4.090 9 H 0.119 0.881 10 C -0.156 4.156 11 C -0.006 4.006 12 N -0.856 5.856 13 S 2.705 3.295 14 O -0.952 6.952 15 O -0.952 6.952 16 C -0.722 4.722 17 C -0.011 4.011 18 C -0.560 4.560 19 H 0.079 0.921 20 C -0.145 4.145 21 N -0.529 5.529 22 Si 0.728 3.272 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C 0.006 3.994 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.619 19.622 12.273 25.064 hybrid contribution -1.542 0.303 -0.140 1.577 sum 8.078 19.926 12.133 24.688 Atomic orbital electron populations 1.20904 0.91210 1.03185 1.02509 1.19789 0.96086 0.92521 0.99527 1.21007 0.94272 0.97367 1.01199 1.21119 0.94324 0.98022 1.00442 1.21114 0.99853 0.92472 1.00781 1.21048 0.93658 0.98320 0.99761 1.19478 0.93489 0.93575 1.00529 1.21508 1.00581 0.91172 0.95703 0.88118 1.22722 1.02491 0.93209 0.97188 1.21666 1.01890 0.97445 0.79601 1.59012 1.86983 1.23342 1.16297 1.05337 0.79133 0.72064 0.72983 1.93540 1.70800 1.83444 1.47391 1.93535 1.82980 1.49547 1.69137 1.30489 1.21085 1.10286 1.10350 1.18961 0.99186 0.89627 0.93313 1.20963 0.91614 1.12551 1.30921 0.92098 1.25072 0.98620 0.95263 0.95515 1.69944 1.35719 1.14737 1.32455 0.86523 0.84710 0.77701 0.78298 1.20069 1.21055 1.20072 1.22049 1.00854 0.79865 0.96621 0.91049 0.91501 0.90752 0.86196 0.86286 0.86164 0.85802 0.90026 0.90428 0.91020 0.91494 0.86268 0.86307 0.94861 0.94849 0.92448 0.90461 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.43 36.00 0.34 -0.54 16 2 C -0.08 -0.70 5.88 -104.62 -0.62 -1.32 16 3 C -0.12 -0.99 9.70 -39.58 -0.38 -1.38 16 4 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 5 C -0.12 -1.04 10.05 -39.59 -0.40 -1.44 16 6 C -0.11 -1.01 8.29 -39.59 -0.33 -1.34 16 7 C -0.07 -0.66 5.00 -104.62 -0.52 -1.18 16 8 C -0.07 -0.66 3.03 -89.62 -0.27 -0.93 16 9 H 0.10 0.88 5.58 -51.94 -0.29 0.59 16 10 C -0.12 -1.02 6.36 -24.90 -0.16 -1.18 16 11 C 0.12 1.35 6.89 -3.06 -0.02 1.33 16 12 N -1.02 -14.20 3.63 -111.18 -0.40 -14.61 16 13 S 2.61 48.19 5.65 -107.50 -0.61 47.58 16 14 O -0.96 -20.45 17.62 -57.54 -1.01 -21.46 16 15 O -0.96 -20.36 17.60 -57.54 -1.01 -21.37 16 16 C -0.59 -11.40 6.12 37.16 0.23 -11.17 16 17 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 18 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 22 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C 0.13 1.58 6.32 -2.35 -0.01 1.56 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 29 H 0.07 0.55 6.07 -51.93 -0.32 0.24 16 30 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.12 1.05 7.02 -52.48 -0.37 0.69 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.63 7.11 -51.93 -0.37 0.27 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 39 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 0.83 6.74 -51.93 -0.35 0.48 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -34.92 369.41 -11.58 -46.50 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.73 Total: -0.94 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: -3.09 Total: -31.60 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.33 Total: -40.47 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -2.03 Total: -42.83 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 48.19 SS G_CDS: -0.61 Total: 47.58 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.92 -11.58 -46.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264730877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.814 kcal (2) G-P(sol) polarization free energy of solvation -34.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds