Wall clock time and date at job start Tue Mar 31 2020 14:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38263 * 120.00340 * 2 1 4 4 C 1.38207 * 120.00101 * 180.20967 * 3 2 1 5 5 C 1.38257 * 120.00171 * 359.85910 * 4 3 2 6 6 C 1.38207 * 119.99946 * 359.95361 * 5 4 3 7 7 C 1.38222 * 120.00207 * 179.81708 * 2 1 3 8 8 C 1.50703 * 119.99591 * 359.97438 * 7 2 1 9 9 H 1.08989 * 110.88824 * 2.15953 * 8 7 2 10 10 C 1.55159 * 111.00134 * 238.27561 * 8 7 2 11 11 C 1.54324 * 102.94134 * 206.42598 * 10 8 7 12 12 N 1.47020 * 107.39983 * 22.11770 * 11 10 8 13 13 S 1.65607 * 125.64915 * 181.10210 * 12 11 10 14 14 O 1.42095 * 104.27758 * 206.09623 * 13 12 11 15 15 O 1.42104 * 104.27244 * 333.95537 * 13 12 11 16 16 C 1.81398 * 104.44868 * 90.02229 * 13 12 11 17 17 C 1.53001 * 109.47395 * 180.02562 * 16 13 12 18 18 C 1.50696 * 109.47323 * 180.02562 * 17 16 13 19 19 H 1.08000 * 120.00010 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99901 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00089 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00055 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47359 * 59.99804 * 22 20 18 24 24 H 1.48492 * 109.47129 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46721 * 299.99757 * 22 20 18 26 26 C 1.47743 * 108.53125 * 1.18235 * 12 11 10 27 27 H 1.09002 * 109.47367 * 270.18685 * 1 2 3 28 28 H 1.08997 * 109.47393 * 30.18641 * 1 2 3 29 29 H 1.09005 * 109.47495 * 150.18726 * 1 2 3 30 30 H 1.07999 * 119.99321 * 0.03902 * 3 2 1 31 31 H 1.07999 * 119.99705 * 179.82927 * 4 3 2 32 32 H 1.08000 * 120.00004 * 179.97438 * 5 4 3 33 33 H 1.08006 * 120.00017 * 180.02562 * 6 5 4 34 34 H 1.09004 * 110.72010 * 88.06387 * 10 8 7 35 35 H 1.08995 * 110.87585 * 324.86236 * 10 8 7 36 36 H 1.09002 * 109.88322 * 141.61300 * 11 10 8 37 37 H 1.09000 * 109.88025 * 262.62465 * 11 10 8 38 38 H 1.08999 * 109.47318 * 300.00373 * 16 13 12 39 39 H 1.09000 * 109.47370 * 60.00371 * 16 13 12 40 40 H 1.08999 * 109.47130 * 300.00412 * 17 16 13 41 41 H 1.09000 * 109.46622 * 59.99836 * 17 16 13 42 42 H 0.96996 * 120.00050 * 179.97438 * 21 20 18 43 43 H 1.09003 * 110.29227 * 216.94505 * 26 12 11 44 44 H 1.08996 * 110.53057 * 94.67717 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5803 1.1973 -0.0044 5 6 4.2716 -0.0001 -0.0058 6 6 3.5806 -1.1969 -0.0019 7 6 2.1980 -1.1970 0.0038 8 6 1.4445 -2.5021 0.0086 9 1 0.3690 -2.3300 -0.0300 10 6 1.8265 -3.3603 1.2435 11 6 1.5558 -4.8008 0.7604 12 7 1.5944 -4.7862 -0.7093 13 16 1.3360 -6.0919 -1.6946 14 8 2.0516 -5.7817 -2.8824 15 8 1.6937 -7.2106 -0.8947 16 6 -0.4510 -6.0774 -2.0058 17 6 -0.8199 -7.2511 -2.9154 18 6 -2.3044 -7.2386 -3.1744 19 1 -2.9229 -6.4702 -2.7347 20 6 -2.8730 -8.2084 -3.9728 21 7 -2.1199 -9.1445 -4.5079 22 14 -4.7130 -8.1925 -4.2946 23 1 -5.0890 -6.9173 -4.9562 24 1 -5.0710 -9.3318 -5.1772 25 1 -5.4418 -8.3156 -3.0065 26 6 1.9041 -3.4128 -1.1572 27 1 -0.3634 0.0034 1.0277 28 1 -0.3634 0.8883 -0.5167 29 1 -0.3634 -0.8917 -0.5109 30 1 1.6582 2.1326 0.0006 31 1 4.1203 2.1326 -0.0072 32 1 5.3516 -0.0001 -0.0097 33 1 4.1206 -2.1323 -0.0026 34 1 1.1928 -3.1138 2.0954 35 1 2.8786 -3.2298 1.4967 36 1 2.3244 -5.4713 1.1448 37 1 0.5739 -5.1280 1.1022 38 1 -0.9853 -6.1690 -1.0602 39 1 -0.7279 -5.1410 -2.4903 40 1 -0.2856 -7.1599 -3.8610 41 1 -0.5431 -8.1873 -2.4305 42 1 -2.5200 -9.8268 -5.0692 43 1 1.3483 -3.1768 -2.0647 44 1 2.9745 -3.2987 -1.3285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264730877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:24 Heat of formation + Delta-G solvation = -81.295243 kcal Electronic energy + Delta-G solvation = -25074.030987 eV Core-core repulsion = 21502.738287 eV Total energy + Delta-G solvation = -3571.292700 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.92106 -38.82058 -38.21969 -37.05785 -35.91057 -34.05025 -33.14366 -33.10982 -30.76082 -29.27132 -27.62215 -27.54542 -24.53325 -23.64532 -22.96673 -22.16744 -20.90611 -19.95098 -19.12622 -18.34213 -17.84854 -17.11277 -17.06140 -16.59194 -16.48670 -15.84061 -15.60204 -15.24121 -14.73327 -14.64403 -14.53853 -14.40948 -14.23447 -13.92301 -13.75990 -13.71356 -13.27623 -13.21330 -13.16605 -13.03350 -12.91505 -12.82214 -12.72709 -12.39724 -12.25555 -12.19504 -12.17721 -12.02770 -11.76739 -11.61009 -11.30212 -11.19568 -10.64961 -9.94659 -9.62317 -9.38552 -8.26829 -6.41468 -0.77882 0.47921 0.54489 1.40424 1.44162 1.52363 1.71802 2.37602 2.81696 2.84684 3.05896 3.07543 3.51857 3.77885 3.80321 3.99753 4.07038 4.09330 4.13132 4.25003 4.28612 4.34833 4.44628 4.52854 4.56103 4.72265 4.73047 4.85118 4.86943 4.91468 4.94864 5.03617 5.05498 5.09119 5.23039 5.24419 5.25676 5.31760 5.40239 5.44405 5.66801 5.66934 5.69231 5.82965 6.04581 6.19388 6.71952 7.28846 8.85356 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.002983 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.391217 B = 9384.818369 C =10261.320872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.088 4.088 3 C -0.129 4.129 4 C -0.126 4.126 5 C -0.134 4.134 6 C -0.123 4.123 7 C -0.082 4.082 8 C -0.060 4.060 9 H 0.112 0.888 10 C -0.107 4.107 11 C 0.107 3.893 12 N -1.013 6.013 13 S 2.629 3.371 14 O -0.994 6.994 15 O -0.992 6.992 16 C -0.585 4.585 17 C 0.021 3.979 18 C -0.541 4.541 19 H 0.077 0.923 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.975 3.025 23 H -0.262 1.262 24 H -0.284 1.284 25 H -0.262 1.262 26 C 0.121 3.879 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.005 0.995 41 H 0.006 0.994 42 H 0.268 0.732 43 H 0.076 0.924 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.600 22.962 14.212 28.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.088 4.088 3 C -0.147 4.147 4 C -0.144 4.144 5 C -0.152 4.152 6 C -0.141 4.141 7 C -0.083 4.083 8 C -0.080 4.080 9 H 0.130 0.870 10 C -0.146 4.146 11 C -0.017 4.017 12 N -0.852 5.852 13 S 2.729 3.271 14 O -0.984 6.984 15 O -0.982 6.982 16 C -0.717 4.717 17 C -0.018 4.018 18 C -0.579 4.579 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.574 5.574 22 Si 0.799 3.201 23 H -0.187 1.187 24 H -0.210 1.210 25 H -0.187 1.187 26 C -0.004 4.004 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.124 0.876 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.023 0.977 41 H 0.024 0.976 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.303 22.123 13.755 27.342 hybrid contribution -1.031 -0.389 -0.560 1.236 sum 7.272 21.734 13.195 26.445 Atomic orbital electron populations 1.20936 0.90185 1.03457 1.03223 1.20032 0.97005 0.92531 0.99280 1.21293 0.94608 0.97961 1.00841 1.21422 0.94572 0.98718 0.99647 1.21360 1.00759 0.92459 1.00660 1.21184 0.93904 0.98767 1.00223 1.19498 0.93584 0.93644 1.01526 1.21450 1.01185 0.90766 0.94561 0.87016 1.22723 1.03445 0.90927 0.97506 1.22001 1.02733 0.99407 0.77602 1.58554 1.86345 1.23069 1.17271 1.04249 0.78302 0.72173 0.72402 1.93490 1.71384 1.84131 1.49444 1.93487 1.83239 1.51809 1.69708 1.30368 1.22603 1.08469 1.10269 1.18819 0.98600 0.91180 0.93217 1.21488 0.92747 1.12890 1.30825 0.90506 1.26145 1.04161 0.94759 0.95202 1.70099 1.38174 1.15730 1.33444 0.85345 0.78088 0.78079 0.78637 1.18698 1.20980 1.18652 1.22308 1.01051 0.79081 0.97974 0.90055 0.90732 0.90994 0.84525 0.84398 0.84819 0.85803 0.87633 0.89914 0.91447 0.90071 0.83925 0.84136 0.97655 0.97554 0.92348 0.90528 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 9.43 71.23 0.67 -0.79 16 2 C -0.09 -1.38 5.88 -19.87 -0.12 -1.49 16 3 C -0.13 -1.84 9.70 22.27 0.22 -1.63 16 4 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 5 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 6 C -0.12 -2.09 8.29 22.27 0.18 -1.91 16 7 C -0.08 -1.39 5.00 -19.86 -0.10 -1.49 16 8 C -0.06 -1.01 3.03 -10.15 -0.03 -1.04 16 9 H 0.11 1.64 5.58 -2.39 -0.01 1.63 16 10 C -0.11 -1.60 6.36 31.78 0.20 -1.40 16 11 C 0.11 2.24 6.89 86.73 0.60 2.83 16 12 N -1.01 -27.31 3.63 -505.67 -1.84 -29.15 16 13 S 2.63 98.39 5.65 -56.49 -0.32 98.07 16 14 O -0.99 -43.41 17.62 -127.65 -2.25 -45.66 16 15 O -0.99 -42.85 17.60 -127.65 -2.25 -45.10 16 16 C -0.58 -22.49 6.12 71.98 0.44 -22.05 16 17 C 0.02 1.10 4.98 29.85 0.15 1.25 16 18 C -0.54 -30.11 9.11 25.60 0.23 -29.88 16 19 H 0.08 3.92 7.74 -2.91 -0.02 3.89 16 20 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 21 N -0.94 -57.32 13.29 21.45 0.28 -57.03 16 22 Si 0.98 43.23 29.54 68.60 2.03 45.25 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 25 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 26 C 0.12 2.76 6.32 86.79 0.55 3.31 16 27 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 29 H 0.07 0.89 6.07 -2.38 -0.01 0.88 16 30 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 32 H 0.13 1.56 8.06 -2.91 -0.02 1.53 16 33 H 0.12 2.01 7.02 -2.91 -0.02 1.99 16 34 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.08 1.17 7.11 -2.39 -0.02 1.16 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.14 4.76 8.14 -2.39 -0.02 4.74 16 39 H 0.14 4.74 8.14 -2.39 -0.02 4.72 16 40 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 43 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.07 1.61 6.74 -2.39 -0.02 1.59 16 Total: -1.00 -76.61 369.41 0.55 -76.06 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.98 Total: 14.95 kcal Atomic # 6 Polarization: -61.31 SS G_CDS: 3.91 Total: -57.41 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -1.55 Total: -86.18 kcal Atomic # 8 Polarization: -86.26 SS G_CDS: -4.50 Total: -90.75 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 98.39 SS G_CDS: -0.32 Total: 98.07 kcal Total: -76.61 0.55 -76.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264730877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.231 kcal (2) G-P(sol) polarization free energy of solvation -76.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds