Wall clock time and date at job start Tue Mar 31 2020 14:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38260 * 119.99989 * 2 1 4 4 C 1.38214 * 119.99910 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.99976 * 359.97438 * 4 3 2 6 6 C 1.38209 * 120.00145 * 0.02927 * 5 4 3 7 7 C 1.38214 * 120.00156 * 180.02562 * 2 1 3 8 8 C 1.50695 * 119.99895 * 359.97438 * 7 2 1 9 9 H 1.09006 * 109.47591 * 35.46420 * 8 7 2 10 10 N 1.46499 * 109.47342 * 155.46480 * 8 7 2 11 11 S 1.65600 * 120.00159 * 244.57059 * 10 8 7 12 12 O 1.42104 * 104.27839 * 179.04008 * 11 10 8 13 13 O 1.42102 * 104.27680 * 306.89365 * 11 10 8 14 14 C 1.81399 * 104.45200 * 62.96734 * 11 10 8 15 15 C 1.53000 * 109.47520 * 180.02562 * 14 11 10 16 16 C 1.50701 * 109.47194 * 180.02562 * 15 14 11 17 17 H 1.07995 * 119.99706 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99845 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00228 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99865 * 359.97438 * 18 16 15 21 21 H 1.48491 * 109.47321 * 90.00188 * 20 18 16 22 22 H 1.48502 * 109.46761 * 210.00193 * 20 18 16 23 23 H 1.48498 * 109.47088 * 329.99564 * 20 18 16 24 24 C 1.53002 * 109.47238 * 275.46293 * 8 7 2 25 25 C 1.52997 * 117.50140 * 244.40198 * 24 8 7 26 26 C 1.52998 * 60.00012 * 252.51068 * 25 24 8 27 27 H 1.09001 * 109.46588 * 269.97725 * 1 2 3 28 28 H 1.08997 * 109.46886 * 29.97103 * 1 2 3 29 29 H 1.08996 * 109.47040 * 149.98073 * 1 2 3 30 30 H 1.08000 * 119.99876 * 0.02562 * 3 2 1 31 31 H 1.07997 * 119.99982 * 180.02562 * 4 3 2 32 32 H 1.08002 * 119.99538 * 180.29533 * 5 4 3 33 33 H 1.08000 * 119.99907 * 179.97438 * 6 5 4 34 34 H 0.97000 * 120.00243 * 64.56341 * 10 8 7 35 35 H 1.09003 * 109.47044 * 300.00236 * 14 11 10 36 36 H 1.08996 * 109.46731 * 59.99783 * 14 11 10 37 37 H 1.09003 * 109.46740 * 299.99915 * 15 14 11 38 38 H 1.08997 * 109.47199 * 59.99751 * 15 14 11 39 39 H 0.96996 * 120.00537 * 179.97438 * 19 18 16 40 40 H 1.08999 * 115.54716 * 30.11291 * 24 8 7 41 41 H 1.09005 * 117.50013 * 0.02562 * 25 24 8 42 42 H 1.08998 * 117.50064 * 145.01429 * 25 24 8 43 43 H 1.09005 * 117.49812 * 252.50952 * 26 25 24 44 44 H 1.08995 * 117.52229 * 107.48609 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5807 -1.1969 -0.0006 7 6 2.1981 -1.1969 -0.0005 8 6 1.4447 -2.5020 -0.0005 9 1 0.5378 -2.3981 -0.5964 10 7 2.2884 -3.5531 -0.5746 11 16 1.8471 -4.2874 -1.9918 12 8 2.8930 -5.2151 -2.2463 13 8 0.5169 -4.7292 -1.7581 14 6 1.8680 -2.9520 -3.2193 15 6 1.4720 -3.5106 -4.5875 16 6 1.4899 -2.4012 -5.6074 17 1 1.7567 -1.3981 -5.3093 18 6 1.1658 -2.6670 -6.9209 19 7 1.1810 -1.6989 -7.8108 20 14 0.7052 -4.4025 -7.4364 21 1 -0.7616 -4.5874 -7.2969 22 1 1.0991 -4.6193 -8.8517 23 1 1.4120 -5.3801 -6.5705 24 6 1.0713 -2.8754 1.4355 25 6 1.6937 -4.1450 2.0200 26 6 0.2118 -4.1245 1.6399 27 1 -0.3632 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5141 30 1 1.6583 2.1327 0.0004 31 1 4.1205 2.1326 -0.0001 32 1 5.3517 0.0001 0.0039 33 1 4.1207 -2.1322 -0.0010 34 1 3.1056 -3.8188 -0.1248 35 1 1.1603 -2.1769 -2.9250 36 1 2.8698 -2.5266 -3.2762 37 1 2.1794 -4.2858 -4.8820 38 1 0.4700 -3.9358 -4.5302 39 1 0.9534 -1.8860 -8.7349 40 1 0.9089 -2.0365 2.1122 41 1 2.3695 -4.7141 1.3816 42 1 1.9412 -4.1415 3.0815 43 1 -0.5158 -4.1075 2.4515 44 1 -0.0880 -4.6801 0.7515 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264822435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:13 Heat of formation + Delta-G solvation = -28.231777 kcal Electronic energy + Delta-G solvation = -26025.190156 eV Core-core repulsion = 22456.198461 eV Total energy + Delta-G solvation = -3568.991695 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.10518 -37.86620 -36.70277 -35.59872 -34.15522 -33.94263 -32.98774 -31.48488 -30.78812 -27.26149 -26.33948 -25.97393 -22.52434 -22.21275 -21.40410 -21.26510 -20.29589 -19.03668 -17.72294 -17.11386 -16.87465 -16.32555 -15.69772 -15.40706 -15.33911 -14.87261 -14.61060 -14.30432 -14.15465 -13.64723 -13.49818 -13.13938 -13.10074 -12.80198 -12.44596 -12.25325 -12.06242 -11.90466 -11.76669 -11.68516 -11.53194 -11.46076 -11.25885 -11.19905 -11.19494 -11.06993 -10.53299 -10.44572 -10.23485 -10.13699 -9.81542 -9.51100 -9.22862 -8.83788 -8.66017 -8.64150 -6.16029 -4.17173 0.62936 1.27117 1.35029 2.93610 3.26292 3.33714 3.37854 3.63824 3.73693 4.07950 4.35947 4.41534 4.55175 4.70762 4.74015 4.81089 4.89528 4.98019 4.99548 5.06411 5.15619 5.24156 5.28893 5.37481 5.51272 5.54970 5.57863 5.60394 5.62034 5.74460 5.79376 5.86011 5.98190 6.03847 6.12092 6.20309 6.28076 6.44105 6.46900 6.59218 6.81434 6.90916 6.95224 6.98848 7.54943 8.37449 8.85728 9.43617 10.96413 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012045 B = 0.004754 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.053863 B = 5887.983544 C = 7165.092825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 C -0.119 4.119 4 C -0.116 4.116 5 C -0.125 4.125 6 C -0.099 4.099 7 C -0.096 4.096 8 C 0.223 3.777 9 H 0.106 0.894 10 N -1.118 6.118 11 S 2.585 3.415 12 O -0.966 6.966 13 O -0.963 6.963 14 C -0.580 4.580 15 C -0.006 4.006 16 C -0.518 4.518 17 H 0.078 0.922 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.868 3.132 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.262 1.262 24 C -0.156 4.156 25 C -0.175 4.175 26 C -0.176 4.176 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.414 0.586 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.032 0.968 38 H 0.028 0.972 39 H 0.266 0.734 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.887 2.894 21.468 21.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.075 4.075 3 C -0.137 4.137 4 C -0.134 4.134 5 C -0.143 4.143 6 C -0.117 4.117 7 C -0.097 4.097 8 C 0.115 3.885 9 H 0.124 0.876 10 N -0.875 5.875 11 S 2.682 3.318 12 O -0.956 6.956 13 O -0.953 6.953 14 C -0.713 4.713 15 C -0.045 4.045 16 C -0.557 4.557 17 H 0.096 0.904 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.694 3.306 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.187 1.187 24 C -0.176 4.176 25 C -0.212 4.212 26 C -0.213 4.213 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.249 0.751 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.130 0.870 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.478 2.021 21.114 21.262 hybrid contribution 0.376 -0.073 -0.382 0.541 sum 1.853 1.948 20.732 20.906 Atomic orbital electron populations 1.20932 0.91131 1.03522 1.02465 1.19709 0.96076 0.92393 0.99302 1.21002 0.94268 0.97368 1.01020 1.21131 0.94345 0.98038 0.99928 1.21113 0.99846 0.92502 1.00865 1.20902 0.93463 0.98151 0.99221 1.19933 0.94131 0.93954 1.01723 1.19129 0.91993 0.83430 0.93942 0.87629 1.55976 1.36110 1.53125 1.42242 1.05769 0.74419 0.76814 0.74787 1.93564 1.57408 1.60088 1.84587 1.93551 1.38269 1.79671 1.83784 1.30284 1.10979 1.16690 1.13343 1.19406 0.96916 0.98371 0.89840 1.20837 1.47742 0.95339 0.91757 0.90386 1.24971 0.94556 0.97054 0.96432 1.69876 1.48382 1.32087 1.03003 0.86948 0.79730 0.85469 0.78455 1.19648 1.20738 1.18652 1.22521 1.06157 0.92707 0.96247 1.22935 0.96886 1.00523 1.00864 1.23104 0.93443 1.00695 1.04070 0.90900 0.91144 0.90929 0.86049 0.86244 0.86162 0.86036 0.75087 0.85822 0.85427 0.95016 0.95406 0.92392 0.86986 0.88502 0.89017 0.88843 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 9.60 36.01 0.35 -0.82 16 2 C -0.07 -0.82 5.88 -104.62 -0.62 -1.43 16 3 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 4 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 5 C -0.13 -1.32 10.05 -39.59 -0.40 -1.72 16 6 C -0.10 -1.09 9.32 -39.59 -0.37 -1.46 16 7 C -0.10 -1.09 5.02 -104.63 -0.52 -1.61 16 8 C 0.22 2.54 2.20 -69.08 -0.15 2.39 16 9 H 0.11 1.26 5.71 -51.93 -0.30 0.96 16 10 N -1.12 -13.73 3.57 -5.88 -0.02 -13.75 16 11 S 2.58 43.26 5.33 -107.50 -0.57 42.69 16 12 O -0.97 -18.80 18.08 -57.54 -1.04 -19.84 16 13 O -0.96 -18.06 17.10 -57.54 -0.98 -19.05 16 14 C -0.58 -10.75 5.96 37.16 0.22 -10.53 16 15 C -0.01 -0.14 4.05 -27.88 -0.11 -0.26 16 16 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 17 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 18 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 19 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 20 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 24 C -0.16 -1.55 5.72 -90.62 -0.52 -2.07 16 25 C -0.17 -1.68 9.76 -26.73 -0.26 -1.94 16 26 C -0.18 -1.85 10.22 -26.73 -0.27 -2.12 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.07 0.71 6.04 -51.93 -0.31 0.40 16 30 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 31 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.12 1.17 6.58 -52.49 -0.35 0.83 16 34 H 0.41 4.23 6.45 -34.47 -0.22 4.01 16 35 H 0.12 2.11 8.14 -51.92 -0.42 1.68 16 36 H 0.13 2.22 8.14 -51.93 -0.42 1.80 16 37 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 38 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.11 1.00 8.08 -51.93 -0.42 0.58 16 41 H 0.10 0.96 6.29 -51.93 -0.33 0.63 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.11 1.40 7.56 -51.93 -0.39 1.01 16 LS Contribution 369.62 15.07 5.57 5.57 Total: -1.00 -34.24 369.62 -11.28 -45.52 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.47 Total: 5.97 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: -3.87 Total: -37.63 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.75 Total: -40.07 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -2.02 Total: -38.89 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 16 Polarization: 43.26 SS G_CDS: -0.57 Total: 42.69 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.24 -11.28 -45.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264822435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.293 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds