Wall clock time and date at job start Tue Mar 31 2020 14:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.19711 * 2 1 4 4 C 1.52790 * 109.19876 * 119.33442 * 2 1 3 5 5 N 1.47232 * 107.90324 * 167.84664 * 4 2 1 6 6 S 1.65606 * 121.33512 * 115.76883 * 5 4 2 7 7 O 1.42094 * 104.27817 * 333.92948 * 6 5 4 8 8 O 1.42106 * 104.27580 * 206.07179 * 6 5 4 9 9 C 1.81396 * 104.45103 * 90.00164 * 6 5 4 10 10 C 1.52997 * 109.47360 * 179.97438 * 9 6 5 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 6 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99594 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99875 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47061 * 90.00257 * 15 13 11 17 17 H 1.48497 * 109.46906 * 209.99430 * 15 13 11 18 18 H 1.48498 * 109.47403 * 329.99876 * 15 13 11 19 19 C 1.46677 * 117.32923 * 296.03993 * 5 4 2 20 20 C 1.50403 * 109.90455 * 44.02921 * 19 5 4 21 21 C 1.38837 * 117.82970 * 169.31694 * 20 19 5 22 22 C 1.37963 * 120.50428 * 179.05413 * 21 20 19 23 23 C 1.38254 * 119.71838 * 0.03920 * 22 21 20 24 24 C 1.37917 * 119.82983 * 0.23028 * 23 22 21 25 25 C 1.37670 * 122.32160 * 348.83039 * 20 19 5 26 26 H 1.08999 * 109.47381 * 300.66277 * 1 2 3 27 27 H 1.09004 * 109.46988 * 60.66013 * 1 2 3 28 28 H 1.09000 * 109.47106 * 180.65987 * 1 2 3 29 29 H 1.09002 * 109.47404 * 179.34165 * 3 2 1 30 30 H 1.09008 * 109.46705 * 299.33847 * 3 2 1 31 31 H 1.08997 * 109.47565 * 59.33352 * 3 2 1 32 32 H 1.09005 * 109.77745 * 48.24845 * 4 2 1 33 33 H 1.09004 * 109.77856 * 287.45081 * 4 2 1 34 34 H 1.09002 * 109.47134 * 59.99751 * 9 6 5 35 35 H 1.08998 * 109.46953 * 300.00489 * 9 6 5 36 36 H 1.09002 * 109.47153 * 59.99820 * 10 9 6 37 37 H 1.09001 * 109.46832 * 300.00011 * 10 9 6 38 38 H 0.97002 * 119.99739 * 180.02562 * 14 13 11 39 39 H 1.08995 * 109.44226 * 164.18405 * 19 5 4 40 40 H 1.09004 * 109.43723 * 284.06215 * 19 5 4 41 41 H 1.07996 * 119.74294 * 359.05140 * 21 20 19 42 42 H 1.08001 * 120.13507 * 180.02562 * 22 21 20 43 43 H 1.08004 * 120.09132 * 180.25494 * 23 22 21 44 44 H 1.07998 * 119.70551 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0330 1.4449 0.0000 4 6 2.0324 -0.7069 1.2579 5 7 3.4747 -0.9528 1.0934 6 16 4.5895 -0.2336 2.0846 7 8 3.9502 0.9562 2.5258 8 8 5.7736 -0.1816 1.3006 9 6 4.7885 -1.3975 3.4616 10 6 5.8069 -0.8397 4.4578 11 6 5.9717 -1.8064 5.6021 12 1 5.4069 -2.7268 5.6171 13 6 6.8444 -1.5163 6.6294 14 7 6.9886 -2.3601 7.6277 15 14 7.8218 0.0754 6.6031 16 1 7.0496 1.1418 7.2901 17 1 9.1161 -0.1270 7.3024 18 1 8.0765 0.4767 5.1963 19 6 3.8849 -1.8555 0.0125 20 6 3.1140 -1.5387 -1.2395 21 6 3.5261 -2.1362 -2.4230 22 6 2.8469 -1.8997 -3.6004 23 6 1.7481 -1.0607 -3.6011 24 6 1.3411 -0.4623 -2.4271 25 6 2.0254 -0.6960 -1.2402 26 1 -0.3634 0.5241 0.8840 27 1 -0.3633 0.5036 -0.8959 28 1 -0.3633 -1.0276 0.0118 29 1 3.1230 1.4502 0.0118 30 1 1.6769 1.9536 -0.8959 31 1 1.6575 1.9605 0.8839 32 1 1.5086 -1.6547 1.3825 33 1 1.8632 -0.0740 2.1292 34 1 5.1416 -2.3554 3.0796 35 1 3.8297 -1.5368 3.9610 36 1 5.4542 0.1183 4.8399 37 1 6.7656 -0.7008 3.9580 38 1 7.6022 -2.1559 8.3507 39 1 4.9510 -1.7324 -0.1780 40 1 3.6861 -2.8863 0.3057 41 1 4.3850 -2.7909 -2.4219 42 1 3.1725 -2.3679 -4.5176 43 1 1.2095 -0.8746 -4.5186 44 1 0.4827 0.1931 -2.4300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270299235.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:43 Heat of formation + Delta-G solvation = -53.457116 kcal Electronic energy + Delta-G solvation = -26012.156976 eV Core-core repulsion = 22442.071428 eV Total energy + Delta-G solvation = -3570.085548 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.56097 -37.19912 -36.76172 -35.58694 -34.94024 -33.96471 -31.50439 -31.33965 -30.19270 -27.38989 -27.07913 -26.02067 -24.90566 -23.15315 -21.51122 -21.17521 -19.48641 -18.36021 -17.72737 -17.12463 -16.87525 -15.98679 -15.77140 -15.23833 -15.10916 -14.50968 -14.42703 -14.23002 -14.17780 -13.89206 -13.61799 -13.32668 -12.85895 -12.74763 -12.63731 -12.31732 -12.15364 -12.05197 -11.92311 -11.76166 -11.67512 -11.53435 -11.49392 -11.27159 -11.22243 -11.18650 -10.80144 -10.64243 -10.46359 -10.17387 -9.76156 -9.45107 -9.02467 -8.80650 -8.69681 -8.67848 -6.18118 -4.19530 0.57711 1.20905 1.22965 2.84883 3.25369 3.32851 3.36976 3.58520 4.15844 4.33662 4.34473 4.35804 4.51907 4.63886 4.82278 4.84543 4.92743 5.06560 5.08266 5.13537 5.24809 5.32425 5.34287 5.44810 5.48578 5.51254 5.54822 5.60392 5.71227 5.75108 5.81320 5.86039 5.93591 5.95579 6.02452 6.25309 6.25763 6.31607 6.37792 6.48852 6.61158 6.79307 6.85254 6.91724 7.52941 8.34971 8.82963 9.41484 10.94270 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.024455 B = 0.003413 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.706445 B = 8202.980839 C = 8561.873988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.040 4.040 3 C -0.135 4.135 4 C 0.130 3.870 5 N -1.005 6.005 6 S 2.587 3.413 7 O -0.957 6.957 8 O -0.962 6.962 9 C -0.582 4.582 10 C -0.007 4.007 11 C -0.520 4.520 12 H 0.078 0.922 13 C 0.072 3.928 14 N -0.895 5.895 15 Si 0.869 3.131 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.262 1.262 19 C 0.156 3.844 20 C -0.083 4.083 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.054 4.054 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.028 0.972 37 H 0.032 0.968 38 H 0.267 0.733 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.534 1.711 -20.953 25.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.041 4.041 3 C -0.192 4.192 4 C 0.005 3.995 5 N -0.840 5.840 6 S 2.686 3.314 7 O -0.948 6.948 8 O -0.953 6.953 9 C -0.715 4.715 10 C -0.046 4.046 11 C -0.559 4.559 12 H 0.096 0.904 13 C -0.131 4.131 14 N -0.533 5.533 15 Si 0.695 3.305 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.186 1.186 19 C 0.030 3.970 20 C -0.084 4.084 21 C -0.134 4.134 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.137 4.137 25 C -0.054 4.054 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.124 0.876 40 H 0.099 0.901 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.014 2.535 -20.946 24.790 hybrid contribution 0.395 0.061 0.290 0.494 sum -12.619 2.596 -20.657 24.345 Atomic orbital electron populations 1.21946 0.93204 1.02267 1.02438 1.19763 0.95737 0.95951 0.92667 1.21876 1.01703 0.93640 1.02021 1.21506 0.79823 1.00455 0.97726 1.57941 1.17985 1.62996 1.45055 1.05790 0.73164 0.76390 0.76019 1.93544 1.75108 1.43271 1.82831 1.93537 1.47132 1.86831 1.67781 1.30351 1.10028 1.15524 1.15623 1.19413 0.92760 0.97697 0.94746 1.20846 1.25653 1.05910 1.03474 0.90392 1.24985 0.96269 0.96779 0.95053 1.69880 1.37000 1.36118 1.10318 0.86930 0.80157 0.84160 0.79251 1.19630 1.20705 1.18626 1.20177 0.99569 0.93357 0.83866 1.19724 0.96046 0.97577 0.95071 1.21066 1.00152 1.00193 0.92013 1.21034 0.96136 0.99019 0.97869 1.21050 0.97372 0.97904 0.97896 1.21226 1.00066 1.00234 0.92145 1.19396 0.94765 0.96568 0.94714 0.91732 0.91980 0.92210 0.92655 0.92709 0.91318 0.90682 0.88292 0.85638 0.85614 0.95389 0.94993 0.92352 0.87595 0.90117 0.85765 0.86116 0.86301 0.85958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 7.91 37.15 0.29 -0.84 16 2 C -0.04 -0.42 0.69 -155.82 -0.11 -0.53 16 3 C -0.14 -1.61 8.20 37.16 0.30 -1.31 16 4 C 0.13 1.49 5.00 -3.75 -0.02 1.47 16 5 N -1.00 -13.37 2.89 -115.25 -0.33 -13.70 16 6 S 2.59 44.24 5.47 -107.50 -0.59 43.65 16 7 O -0.96 -18.07 16.59 -57.54 -0.95 -19.02 16 8 O -0.96 -18.91 16.62 -57.54 -0.96 -19.87 16 9 C -0.58 -10.61 6.12 37.16 0.23 -10.38 16 10 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 11 C -0.52 -14.48 9.66 -34.44 -0.33 -14.81 16 12 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 13 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 14 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 15 Si 0.87 21.44 27.47 -169.99 -4.67 16.77 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 19 C 0.16 1.84 6.25 -5.24 -0.03 1.81 16 20 C -0.08 -0.96 5.81 -104.75 -0.61 -1.56 16 21 C -0.12 -1.17 9.62 -39.46 -0.38 -1.55 16 22 C -0.12 -1.12 10.05 -39.68 -0.40 -1.51 16 23 C -0.12 -1.11 10.04 -39.69 -0.40 -1.51 16 24 C -0.12 -1.15 8.96 -39.42 -0.35 -1.51 16 25 C -0.05 -0.61 4.74 -104.60 -0.50 -1.10 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.44 6.26 -51.93 -0.33 0.11 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.79 7.80 -51.93 -0.41 0.39 16 30 H 0.05 0.57 8.10 -51.92 -0.42 0.15 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.10 1.13 7.06 -51.93 -0.37 0.76 16 34 H 0.13 2.08 8.14 -51.92 -0.42 1.66 16 35 H 0.13 2.07 8.14 -51.93 -0.42 1.65 16 36 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 37 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.11 1.31 6.87 -51.93 -0.36 0.95 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.12 1.03 8.05 -52.49 -0.42 0.61 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 44 H 0.12 0.97 6.17 -52.49 -0.32 0.65 16 LS Contribution 360.77 15.07 5.44 5.44 Total: -1.00 -33.96 360.77 -10.58 -44.53 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.78 Total: 0.08 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: -2.51 Total: -31.66 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.44 Total: -39.92 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -1.91 Total: -38.89 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 44.24 SS G_CDS: -0.59 Total: 43.65 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.96 -10.58 -44.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270299235.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.924 kcal (2) G-P(sol) polarization free energy of solvation -33.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds