Wall clock time and date at job start Tue Mar 31 2020 14:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38282 * 119.92800 * 2 1 4 4 C 1.38103 * 120.07861 * 179.97438 * 3 2 1 5 5 C 1.38915 * 119.91900 * 0.02562 * 4 3 2 6 6 N 1.39681 * 120.06681 * 179.97438 * 5 4 3 7 7 C 1.46502 * 119.99708 * 238.91795 * 6 5 4 8 8 C 1.50699 * 109.47235 * 275.00368 * 7 6 5 9 9 H 1.08000 * 120.00075 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00150 * 179.97438 * 8 7 6 11 11 N 1.31524 * 119.99992 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00395 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46741 * 60.00325 * 12 10 8 14 14 H 1.48496 * 109.47162 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.46867 * 300.00938 * 12 10 8 16 16 S 1.65592 * 120.00325 * 58.92384 * 6 5 4 17 17 O 1.42101 * 104.28033 * 148.12987 * 16 6 5 18 18 O 1.42105 * 104.27866 * 20.27617 * 16 6 5 19 19 C 1.81398 * 104.45008 * 264.20185 * 16 6 5 20 20 C 1.53002 * 109.46980 * 179.97438 * 19 16 6 21 21 C 1.53003 * 109.46905 * 180.02562 * 20 19 16 22 22 C 1.52999 * 117.49599 * 243.74824 * 21 20 19 23 23 C 1.53001 * 117.50138 * 175.08691 * 21 20 19 24 24 C 1.38904 * 119.85248 * 0.25383 * 5 4 3 25 25 C 1.38101 * 119.92474 * 359.49424 * 24 5 4 26 26 H 1.08996 * 109.47387 * 89.99309 * 1 2 3 27 27 H 1.09000 * 109.47256 * 210.00185 * 1 2 3 28 28 H 1.09003 * 109.46654 * 329.99354 * 1 2 3 29 29 H 1.08006 * 119.95802 * 359.95965 * 3 2 1 30 30 H 1.07998 * 120.04074 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.46958 * 35.00475 * 7 6 5 32 32 H 1.08995 * 109.47145 * 155.00090 * 7 6 5 33 33 H 0.96997 * 119.99695 * 179.97438 * 11 10 8 34 34 H 1.09005 * 109.46877 * 60.00262 * 19 16 6 35 35 H 1.08992 * 109.46968 * 300.00015 * 19 16 6 36 36 H 1.09001 * 109.47178 * 299.99589 * 20 19 16 37 37 H 1.08997 * 109.47204 * 60.00134 * 20 19 16 38 38 H 1.08999 * 115.55041 * 29.41744 * 21 20 19 39 39 H 1.08997 * 117.50103 * 359.97438 * 22 21 20 40 40 H 1.09000 * 117.49848 * 145.02284 * 22 21 20 41 41 H 1.08993 * 117.49839 * 214.97889 * 23 21 20 42 42 H 1.09004 * 117.49337 * 359.97438 * 23 21 20 43 43 H 1.08003 * 120.03479 * 179.72725 * 24 5 4 44 44 H 1.08007 * 119.96344 * 180.25553 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2021 0.0005 5 6 4.2740 -0.0001 0.0005 6 7 5.6708 -0.0001 0.0005 7 6 6.4033 -0.6551 -1.0861 8 6 6.5472 -2.1238 -0.7810 9 1 6.1340 -2.5290 0.1308 10 6 7.2054 -2.9506 -1.6665 11 7 7.7082 -2.4573 -2.7773 12 14 7.3845 -4.7711 -1.2882 13 1 6.0382 -5.3843 -1.1579 14 1 8.1268 -5.4350 -2.3897 15 1 8.1310 -4.9411 -0.0157 16 16 6.4988 0.7402 1.2287 17 8 7.6869 -0.0277 1.3632 18 8 5.5554 0.8215 2.2883 19 6 6.8787 2.3935 0.5864 20 6 7.6520 3.1857 1.6426 21 6 7.9719 4.5804 1.1010 22 6 9.4460 4.9433 0.9106 23 6 8.6443 5.5711 2.0536 24 6 3.5778 -1.2021 -0.0053 25 6 2.1969 -1.1985 -0.0006 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5140 29 1 1.6550 2.1327 -0.0007 30 1 4.1162 2.1384 0.0001 31 1 5.8559 -0.5299 -2.0203 32 1 7.3915 -0.2051 -1.1810 33 1 8.1716 -3.0389 -3.4000 34 1 5.9504 2.9137 0.3502 35 1 7.4840 2.3026 -0.3154 36 1 7.0463 3.2766 2.5442 37 1 8.5803 2.6657 1.8793 38 1 7.2581 4.9802 0.3808 39 1 10.1879 4.1886 1.1715 40 1 9.7019 5.5822 0.0654 41 1 8.3732 6.6226 1.9598 42 1 8.8584 5.2293 3.0662 43 1 4.1160 -2.1385 -0.0098 44 1 1.6549 -2.1328 -0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271240886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:16 Heat of formation + Delta-G solvation = -27.693562 kcal Electronic energy + Delta-G solvation = -25599.456775 eV Core-core repulsion = 22030.488418 eV Total energy + Delta-G solvation = -3568.968357 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.15752 -37.84488 -36.56376 -35.76897 -35.32751 -32.74286 -32.41079 -31.09215 -30.53367 -27.43327 -25.57005 -24.60548 -22.68253 -22.52054 -22.20907 -21.02513 -20.56302 -18.57297 -17.40543 -16.80468 -16.08160 -15.94436 -15.72610 -15.14639 -15.02146 -14.73280 -14.30617 -14.19297 -13.99216 -13.51792 -13.25943 -13.02298 -12.74335 -12.51635 -12.20638 -12.06369 -11.89306 -11.76825 -11.70479 -11.59335 -11.55111 -11.49628 -11.24552 -11.02604 -10.91457 -10.82979 -10.69268 -10.53298 -10.22376 -10.13017 -10.04461 -9.69141 -8.72195 -8.51085 -8.46971 -7.63362 -6.10548 -4.13986 0.68206 1.73698 1.85211 3.16618 3.32421 3.36041 3.41284 3.61695 4.13018 4.24274 4.41270 4.46499 4.61311 4.62166 4.76360 4.94348 5.03594 5.14400 5.19476 5.24764 5.29617 5.38247 5.43787 5.47986 5.49727 5.68840 5.72161 5.74599 5.77046 5.83847 5.86860 5.96125 5.97514 6.10277 6.14145 6.39915 6.47350 6.72351 6.97767 7.01013 7.08909 7.26810 7.32602 7.73502 7.87870 8.12036 8.86475 9.50600 10.98334 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.008444 B = 0.005550 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3315.102841 B = 5044.132990 C = 7646.499911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.110 4.110 3 C -0.106 4.106 4 C -0.146 4.146 5 C 0.181 3.819 6 N -0.941 5.941 7 C 0.254 3.746 8 C -0.526 4.526 9 H 0.063 0.937 10 C 0.064 3.936 11 N -0.896 5.896 12 Si 0.896 3.104 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.274 1.274 16 S 2.598 3.402 17 O -0.930 6.930 18 O -0.961 6.961 19 C -0.637 4.637 20 C -0.080 4.080 21 C -0.145 4.145 22 C -0.181 4.181 23 C -0.183 4.183 24 C -0.105 4.105 25 C -0.108 4.108 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.265 0.735 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.143 0.857 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.433 13.034 4.948 15.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.111 4.111 3 C -0.125 4.125 4 C -0.167 4.167 5 C 0.086 3.914 6 N -0.771 5.771 7 C 0.134 3.866 8 C -0.565 4.565 9 H 0.082 0.918 10 C -0.138 4.138 11 N -0.535 5.535 12 Si 0.724 3.276 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.199 1.199 16 S 2.692 3.308 17 O -0.920 6.920 18 O -0.951 6.951 19 C -0.764 4.764 20 C -0.119 4.119 21 C -0.164 4.164 22 C -0.218 4.218 23 C -0.220 4.220 24 C -0.126 4.126 25 C -0.127 4.127 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.137 0.863 30 H 0.131 0.869 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.146 0.854 35 H 0.153 0.847 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.161 0.839 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.016 12.595 5.582 15.032 hybrid contribution 0.278 -0.470 -0.643 0.843 sum -5.738 12.124 4.940 14.294 Atomic orbital electron populations 1.20707 0.91693 1.02216 1.01778 1.19798 0.95649 0.93293 1.02371 1.20642 0.93177 0.97287 1.01382 1.21103 0.94884 0.96443 1.04281 1.17308 0.82699 0.93176 0.98240 1.55550 1.10921 1.67819 1.42805 1.19257 0.90659 0.92972 0.83741 1.21371 1.36374 0.92654 1.06065 0.91844 1.24908 0.95003 0.99097 0.94817 1.69903 1.37168 1.36036 1.10345 0.86580 0.78416 0.84529 0.78125 1.20076 1.21172 1.19917 1.05484 0.74609 0.76539 0.74165 1.93650 1.48320 1.65410 1.84608 1.93560 1.61864 1.87259 1.52433 1.30835 1.10113 1.24338 1.11145 1.20875 1.00330 0.94242 0.96404 1.22226 0.96223 0.95116 1.02829 1.23110 0.94234 1.03864 1.00605 1.23018 1.04821 0.98380 0.95782 1.21595 0.93746 0.98981 0.98264 1.20936 0.93826 0.97280 1.00658 0.91684 0.91908 0.92045 0.86342 0.86890 0.94153 0.94052 0.92563 0.85449 0.84660 0.90165 0.90218 0.87376 0.88407 0.88716 0.88749 0.88619 0.83900 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 36.01 0.36 -0.78 16 2 C -0.11 -1.59 5.88 -104.59 -0.62 -2.21 16 3 C -0.11 -1.55 9.69 -39.61 -0.38 -1.93 16 4 C -0.15 -2.41 9.31 -39.38 -0.37 -2.78 16 5 C 0.18 3.55 4.82 -83.78 -0.40 3.15 16 6 N -0.94 -19.70 2.79 -59.81 -0.17 -19.87 16 7 C 0.25 6.20 4.88 -5.19 -0.03 6.18 16 8 C -0.53 -14.32 8.18 -34.44 -0.28 -14.60 16 9 H 0.06 1.73 6.98 -52.49 -0.37 1.37 16 10 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.90 -25.56 13.29 55.43 0.74 -24.82 16 12 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 16 S 2.60 50.13 5.08 -107.50 -0.55 49.58 16 17 O -0.93 -21.56 17.20 -57.54 -0.99 -22.55 16 18 O -0.96 -19.85 16.86 -57.54 -0.97 -20.82 16 19 C -0.64 -8.85 6.14 37.16 0.23 -8.62 16 20 C -0.08 -1.00 5.50 -26.73 -0.15 -1.15 16 21 C -0.14 -1.54 5.73 -90.62 -0.52 -2.06 16 22 C -0.18 -1.78 10.18 -26.69 -0.27 -2.05 16 23 C -0.18 -1.67 10.26 -26.69 -0.27 -1.95 16 24 C -0.10 -2.04 9.51 -39.39 -0.37 -2.42 16 25 C -0.11 -1.75 9.69 -39.62 -0.38 -2.13 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 29 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 30 H 0.11 1.57 6.63 -52.49 -0.35 1.22 16 31 H 0.04 1.02 8.09 -51.93 -0.42 0.60 16 32 H 0.04 1.04 7.77 -51.93 -0.40 0.63 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.13 1.48 6.72 -51.92 -0.35 1.13 16 35 H 0.14 1.80 8.14 -51.93 -0.42 1.38 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.99 7.88 -51.93 -0.41 0.58 16 38 H 0.11 1.07 8.08 -51.93 -0.42 0.65 16 39 H 0.10 0.97 8.03 -51.93 -0.42 0.55 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.14 3.01 6.19 -52.48 -0.32 2.68 16 44 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -32.94 377.11 -11.64 -44.58 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.81 Total: 3.41 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: -3.56 Total: -31.68 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.57 Total: -44.69 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -1.96 Total: -43.36 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 50.13 SS G_CDS: -0.55 Total: 49.58 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.94 -11.64 -44.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271240886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.888 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds