Wall clock time and date at job start Tue Mar 31 2020 14:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38282 * 119.92800 * 2 1 4 4 C 1.38103 * 120.07861 * 179.97438 * 3 2 1 5 5 C 1.38915 * 119.91900 * 0.02562 * 4 3 2 6 6 N 1.39681 * 120.06681 * 179.97438 * 5 4 3 7 7 C 1.46502 * 119.99708 * 238.91795 * 6 5 4 8 8 C 1.50699 * 109.47235 * 275.00368 * 7 6 5 9 9 H 1.08000 * 120.00075 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00150 * 179.97438 * 8 7 6 11 11 N 1.31524 * 119.99992 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00395 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46741 * 60.00325 * 12 10 8 14 14 H 1.48496 * 109.47162 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.46867 * 300.00938 * 12 10 8 16 16 S 1.65592 * 120.00325 * 58.92384 * 6 5 4 17 17 O 1.42101 * 104.28033 * 148.12987 * 16 6 5 18 18 O 1.42105 * 104.27866 * 20.27617 * 16 6 5 19 19 C 1.81398 * 104.45008 * 264.20185 * 16 6 5 20 20 C 1.53002 * 109.46980 * 179.97438 * 19 16 6 21 21 C 1.53003 * 109.46905 * 180.02562 * 20 19 16 22 22 C 1.52999 * 117.49599 * 243.74824 * 21 20 19 23 23 C 1.53001 * 117.50138 * 175.08691 * 21 20 19 24 24 C 1.38904 * 119.85248 * 0.25383 * 5 4 3 25 25 C 1.38101 * 119.92474 * 359.49424 * 24 5 4 26 26 H 1.08996 * 109.47387 * 89.99309 * 1 2 3 27 27 H 1.09000 * 109.47256 * 210.00185 * 1 2 3 28 28 H 1.09003 * 109.46654 * 329.99354 * 1 2 3 29 29 H 1.08006 * 119.95802 * 359.95965 * 3 2 1 30 30 H 1.07998 * 120.04074 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.46958 * 35.00475 * 7 6 5 32 32 H 1.08995 * 109.47145 * 155.00090 * 7 6 5 33 33 H 0.96997 * 119.99695 * 179.97438 * 11 10 8 34 34 H 1.09005 * 109.46877 * 60.00262 * 19 16 6 35 35 H 1.08992 * 109.46968 * 300.00015 * 19 16 6 36 36 H 1.09001 * 109.47178 * 299.99589 * 20 19 16 37 37 H 1.08997 * 109.47204 * 60.00134 * 20 19 16 38 38 H 1.08999 * 115.55041 * 29.41744 * 21 20 19 39 39 H 1.08997 * 117.50103 * 359.97438 * 22 21 20 40 40 H 1.09000 * 117.49848 * 145.02284 * 22 21 20 41 41 H 1.08993 * 117.49839 * 214.97889 * 23 21 20 42 42 H 1.09004 * 117.49337 * 359.97438 * 23 21 20 43 43 H 1.08003 * 120.03479 * 179.72725 * 24 5 4 44 44 H 1.08007 * 119.96344 * 180.25553 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2021 0.0005 5 6 4.2740 -0.0001 0.0005 6 7 5.6708 -0.0001 0.0005 7 6 6.4033 -0.6551 -1.0861 8 6 6.5472 -2.1238 -0.7810 9 1 6.1340 -2.5290 0.1308 10 6 7.2054 -2.9506 -1.6665 11 7 7.7082 -2.4573 -2.7773 12 14 7.3845 -4.7711 -1.2882 13 1 6.0382 -5.3843 -1.1579 14 1 8.1268 -5.4350 -2.3897 15 1 8.1310 -4.9411 -0.0157 16 16 6.4988 0.7402 1.2287 17 8 7.6869 -0.0277 1.3632 18 8 5.5554 0.8215 2.2883 19 6 6.8787 2.3935 0.5864 20 6 7.6520 3.1857 1.6426 21 6 7.9719 4.5804 1.1010 22 6 9.4460 4.9433 0.9106 23 6 8.6443 5.5711 2.0536 24 6 3.5778 -1.2021 -0.0053 25 6 2.1969 -1.1985 -0.0006 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5140 29 1 1.6550 2.1327 -0.0007 30 1 4.1162 2.1384 0.0001 31 1 5.8559 -0.5299 -2.0203 32 1 7.3915 -0.2051 -1.1810 33 1 8.1716 -3.0389 -3.4000 34 1 5.9504 2.9137 0.3502 35 1 7.4840 2.3026 -0.3154 36 1 7.0463 3.2766 2.5442 37 1 8.5803 2.6657 1.8793 38 1 7.2581 4.9802 0.3808 39 1 10.1879 4.1886 1.1715 40 1 9.7019 5.5822 0.0654 41 1 8.3732 6.6226 1.9598 42 1 8.8584 5.2293 3.0662 43 1 4.1160 -2.1385 -0.0098 44 1 1.6549 -2.1328 -0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271240886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:15 Heat of formation + Delta-G solvation = -47.299035 kcal Electronic energy + Delta-G solvation = -25600.306932 eV Core-core repulsion = 22030.488418 eV Total energy + Delta-G solvation = -3569.818514 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.46543 -38.65367 -38.18868 -37.28883 -36.94702 -34.71931 -33.47586 -32.42239 -31.80935 -29.21812 -26.89446 -25.71648 -24.54482 -23.50485 -23.21917 -22.26962 -21.47648 -20.06033 -18.90941 -18.75434 -17.64178 -17.43371 -16.81022 -16.53748 -16.26550 -16.15984 -15.84859 -15.39366 -14.97980 -14.71322 -14.56548 -14.42121 -14.27706 -13.88008 -13.66799 -13.43647 -13.23001 -13.15837 -12.99701 -12.95377 -12.84086 -12.72142 -12.61548 -12.56184 -12.33489 -12.32658 -12.06582 -12.03009 -11.74518 -11.56025 -11.11731 -10.87169 -10.61490 -10.31618 -9.79336 -9.02265 -8.22870 -6.32615 -0.79259 0.45347 0.56379 1.36043 1.39464 1.46343 1.63901 2.38574 2.79026 2.85035 2.91474 3.07494 3.17232 3.45842 3.73537 3.81185 3.96693 4.05800 4.10369 4.12292 4.16394 4.28022 4.39806 4.50817 4.55951 4.62016 4.72839 4.79212 4.82101 4.84143 4.95599 4.96911 5.04918 5.11192 5.19057 5.26353 5.27067 5.28225 5.30373 5.47281 5.64423 5.76832 5.79757 5.89374 6.06524 6.31832 6.72034 7.34438 8.84937 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.008444 B = 0.005550 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3315.102841 B = 5044.132990 C = 7646.499911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.104 4.104 3 C -0.103 4.103 4 C -0.150 4.150 5 C 0.142 3.858 6 N -0.947 5.947 7 C 0.270 3.730 8 C -0.539 4.539 9 H 0.049 0.951 10 C 0.016 3.984 11 N -0.923 5.923 12 Si 0.951 3.049 13 H -0.265 1.265 14 H -0.274 1.274 15 H -0.279 1.279 16 S 2.587 3.413 17 O -0.985 6.985 18 O -0.982 6.982 19 C -0.599 4.599 20 C -0.089 4.089 21 C -0.154 4.154 22 C -0.190 4.190 23 C -0.172 4.172 24 C -0.140 4.140 25 C -0.115 4.115 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.161 0.839 30 H 0.139 0.861 31 H 0.026 0.974 32 H 0.029 0.971 33 H 0.268 0.732 34 H 0.162 0.838 35 H 0.145 0.855 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.456 15.620 4.967 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.105 4.105 3 C -0.121 4.121 4 C -0.171 4.171 5 C 0.048 3.952 6 N -0.775 5.775 7 C 0.148 3.852 8 C -0.578 4.578 9 H 0.067 0.933 10 C -0.183 4.183 11 N -0.563 5.563 12 Si 0.776 3.224 13 H -0.190 1.190 14 H -0.199 1.199 15 H -0.204 1.204 16 S 2.688 3.312 17 O -0.976 6.976 18 O -0.972 6.972 19 C -0.732 4.732 20 C -0.128 4.128 21 C -0.174 4.174 22 C -0.227 4.227 23 C -0.209 4.209 24 C -0.162 4.162 25 C -0.134 4.134 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.178 0.822 30 H 0.157 0.843 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.180 0.820 35 H 0.163 0.837 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.140 0.860 39 H 0.109 0.891 40 H 0.125 0.875 41 H 0.131 0.869 42 H 0.116 0.884 43 H 0.127 0.873 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.080 15.117 5.627 18.041 hybrid contribution 0.825 -1.155 -0.603 1.542 sum -7.256 13.961 5.025 16.517 Atomic orbital electron populations 1.20788 0.88424 1.03783 1.03149 1.20307 0.97955 0.92425 0.99811 1.21181 0.92498 0.99074 0.99340 1.21445 0.96055 0.96132 1.03462 1.17653 0.82081 0.94563 1.00863 1.55305 1.11751 1.68857 1.41627 1.18774 0.90210 0.91805 0.84381 1.21650 1.36037 0.94576 1.05511 0.93263 1.25653 0.94836 1.03078 0.94778 1.69983 1.37882 1.37360 1.11035 0.85720 0.78783 0.80076 0.77853 1.19009 1.19893 1.20433 1.05569 0.73316 0.78435 0.73928 1.93575 1.49864 1.68668 1.85474 1.93514 1.62059 1.88196 1.53436 1.30497 1.12300 1.18947 1.11492 1.21041 1.00064 0.95337 0.96365 1.22210 0.97024 0.94060 1.04084 1.23211 0.93688 1.04126 1.01637 1.23133 1.03266 0.98953 0.95550 1.21563 0.95471 0.98019 1.01109 1.21183 0.92544 0.99298 1.00373 0.90218 0.91045 0.89896 0.82183 0.84308 0.95565 0.95288 0.92324 0.82036 0.83665 0.89213 0.90873 0.85980 0.89140 0.87521 0.86932 0.88406 0.87261 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.81 10.01 71.24 0.71 -1.10 16 2 C -0.10 -2.75 5.88 -19.84 -0.12 -2.86 16 3 C -0.10 -2.65 9.69 22.25 0.22 -2.44 16 4 C -0.15 -4.72 9.31 22.40 0.21 -4.51 16 5 C 0.14 5.74 4.82 38.21 0.18 5.92 16 6 N -0.95 -41.37 2.79 -343.13 -0.96 -42.33 16 7 C 0.27 13.96 4.88 85.63 0.42 14.37 16 8 C -0.54 -31.05 8.18 25.60 0.21 -30.84 16 9 H 0.05 2.90 6.98 -2.91 -0.02 2.88 16 10 C 0.02 0.93 5.46 84.65 0.46 1.39 16 11 N -0.92 -54.29 13.29 21.45 0.28 -54.01 16 12 Si 0.95 45.46 29.54 68.60 2.03 47.49 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 14 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 15 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 16 S 2.59 102.85 5.08 -56.49 -0.29 102.56 16 17 O -0.99 -48.45 17.20 -127.65 -2.20 -50.65 16 18 O -0.98 -41.40 16.86 -127.65 -2.15 -43.56 16 19 C -0.60 -15.75 6.14 71.98 0.44 -15.31 16 20 C -0.09 -2.08 5.50 30.60 0.17 -1.91 16 21 C -0.15 -2.86 5.73 -10.79 -0.06 -2.92 16 22 C -0.19 -3.33 10.18 30.62 0.31 -3.02 16 23 C -0.17 -2.65 10.26 30.62 0.31 -2.34 16 24 C -0.14 -5.76 9.51 22.40 0.21 -5.54 16 25 C -0.12 -3.71 9.69 22.25 0.22 -3.50 16 26 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 28 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 29 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 30 H 0.14 3.44 6.63 -2.91 -0.02 3.42 16 31 H 0.03 1.40 8.09 -2.39 -0.02 1.38 16 32 H 0.03 1.55 7.77 -2.39 -0.02 1.53 16 33 H 0.27 14.86 8.31 -92.71 -0.77 14.08 16 34 H 0.16 3.19 6.72 -2.39 -0.02 3.17 16 35 H 0.15 3.67 8.14 -2.39 -0.02 3.66 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.07 1.80 7.88 -2.39 -0.02 1.78 16 38 H 0.12 1.94 8.08 -2.39 -0.02 1.92 16 39 H 0.09 1.70 8.03 -2.39 -0.02 1.68 16 40 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.11 5.07 6.19 -2.91 -0.02 5.05 16 44 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -75.92 377.11 1.60 -74.32 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.98 Total: 20.77 kcal Atomic # 6 Polarization: -58.49 SS G_CDS: 3.90 Total: -54.59 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -0.67 Total: -96.34 kcal Atomic # 8 Polarization: -89.86 SS G_CDS: -4.35 Total: -94.20 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: 102.85 SS G_CDS: -0.29 Total: 102.56 kcal Total: -75.92 1.60 -74.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271240886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.022 kcal (2) G-P(sol) polarization free energy of solvation -75.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds