Wall clock time and date at job start Tue Mar 31 2020 14:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38238 * 119.99886 * 2 1 4 4 C 1.38223 * 120.00039 * 180.02562 * 3 2 1 5 5 C 1.38234 * 120.00296 * 359.97438 * 4 3 2 6 6 S 1.76201 * 120.00384 * 179.97438 * 5 4 3 7 7 O 1.42095 * 104.27630 * 333.93203 * 6 5 4 8 8 O 1.42104 * 104.27637 * 206.07326 * 6 5 4 9 9 C 1.81398 * 104.44594 * 90.00412 * 6 5 4 10 10 C 1.53008 * 109.47200 * 179.97438 * 9 6 5 11 11 C 1.53003 * 109.47212 * 179.97438 * 10 9 6 12 12 N 1.46496 * 109.46867 * 179.97438 * 11 10 9 13 13 C 1.36935 * 120.00168 * 270.00096 * 12 11 10 14 14 H 1.07997 * 119.99803 * 144.92408 * 13 12 11 15 15 C 1.38812 * 120.00029 * 324.92336 * 13 12 11 16 16 N 1.31620 * 119.99923 * 337.94615 * 15 13 12 17 17 Si 1.86798 * 120.00018 * 157.95106 * 15 13 12 18 18 H 1.48498 * 109.47670 * 59.99599 * 17 15 13 19 19 H 1.48500 * 109.47161 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46770 * 299.99456 * 17 15 13 21 21 C 1.46503 * 119.99704 * 90.00219 * 12 11 10 22 22 C 1.53004 * 117.49740 * 183.23422 * 21 12 11 23 23 C 1.52995 * 117.49870 * 114.57730 * 21 12 11 24 24 C 1.38242 * 119.99730 * 0.26016 * 5 4 3 25 25 C 1.38231 * 119.99968 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47074 * 89.99752 * 1 2 3 27 27 H 1.09003 * 109.46745 * 209.99768 * 1 2 3 28 28 H 1.08996 * 109.47093 * 329.99716 * 1 2 3 29 29 H 1.08005 * 119.99869 * 359.97438 * 3 2 1 30 30 H 1.08005 * 120.00211 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.47539 * 60.00062 * 9 6 5 32 32 H 1.09000 * 109.47540 * 300.00197 * 9 6 5 33 33 H 1.09001 * 109.46702 * 60.00110 * 10 9 6 34 34 H 1.08994 * 109.46972 * 300.00094 * 10 9 6 35 35 H 1.08995 * 109.46805 * 60.00115 * 11 10 9 36 36 H 1.09000 * 109.47048 * 300.00092 * 11 10 9 37 37 H 0.96995 * 119.99672 * 175.76702 * 16 15 13 38 38 H 1.08999 * 115.55313 * 328.90767 * 21 12 11 39 39 H 1.09001 * 117.49599 * 0.02562 * 22 21 12 40 40 H 1.09000 * 117.49619 * 145.02077 * 22 21 12 41 41 H 1.09002 * 117.50220 * 214.97803 * 23 21 12 42 42 H 1.09001 * 117.50083 * 359.97438 * 23 21 12 43 43 H 1.07999 * 119.99902 * 179.72691 * 24 5 4 44 44 H 1.07996 * 120.00112 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0005 6 16 6.0338 0.0002 -0.0019 7 8 6.3837 1.2369 -0.6079 8 8 6.3837 -1.2371 -0.6069 9 6 6.4876 0.0008 1.7544 10 6 8.0119 0.0002 1.8872 11 6 8.3948 0.0014 3.3686 12 7 9.8542 0.0003 3.4957 13 6 10.5353 -1.1861 3.5564 14 1 11.5112 -1.2723 3.1020 15 6 9.9713 -2.2780 4.2019 16 7 9.0313 -2.0952 5.1049 17 14 10.5466 -4.0066 3.7892 18 1 11.9977 -4.1281 4.0800 19 1 9.7928 -4.9883 4.6098 20 1 10.3059 -4.2777 2.3490 21 6 10.5850 1.2685 3.5580 22 6 12.1126 1.2015 3.6143 23 6 11.3171 1.5987 4.8602 24 6 3.5806 -1.1971 -0.0054 25 6 2.1982 -1.1971 0.0005 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6582 2.1325 -0.0004 30 1 4.1205 2.1326 -0.0010 31 1 6.0811 -0.8890 2.2351 32 1 6.0811 0.8909 2.2345 33 1 8.4188 0.8899 1.4065 34 1 8.4181 -0.8901 1.4073 35 1 7.9878 -0.8879 3.8497 36 1 7.9886 0.8921 3.8481 37 1 8.5941 -2.8597 5.5113 38 1 10.1375 2.0965 3.0084 39 1 12.5737 0.2139 3.6045 40 1 12.6699 1.9857 3.1019 41 1 11.3515 2.6441 5.1672 42 1 11.2546 0.8727 5.6708 43 1 4.1206 -2.1324 -0.0099 44 1 1.6583 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271627184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:09 Heat of formation + Delta-G solvation = -5.067918 kcal Electronic energy + Delta-G solvation = -24831.537377 eV Core-core repulsion = 21263.550142 eV Total energy + Delta-G solvation = -3567.987235 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.51884 -37.17981 -36.88876 -35.73315 -34.48899 -33.26833 -32.57712 -31.24981 -30.13073 -27.59016 -26.07102 -23.90693 -23.06873 -22.14964 -21.47134 -21.00416 -19.70954 -18.92655 -17.76515 -16.57672 -16.18567 -15.81098 -15.54367 -15.42180 -15.12038 -14.66494 -14.51038 -14.21818 -14.15982 -13.75400 -13.65322 -12.92473 -12.70084 -12.66074 -12.47363 -12.24229 -12.03378 -11.87402 -11.81076 -11.68779 -11.36064 -11.17306 -11.09865 -10.91660 -10.73481 -10.71865 -10.45362 -10.22111 -9.91730 -9.69220 -9.61159 -9.31706 -9.24723 -9.22022 -8.50818 -6.63743 -5.85004 -3.44423 0.19998 0.67417 1.10075 3.04362 3.25697 3.35081 3.40747 3.44976 4.03854 4.24445 4.41241 4.47326 4.52769 4.70864 4.87250 4.90987 4.95990 5.10035 5.15327 5.18320 5.28061 5.36989 5.40304 5.42308 5.64190 5.74290 5.75714 5.90054 5.93150 5.94875 6.07699 6.09397 6.19818 6.25419 6.35195 6.49341 6.55113 6.63969 6.65310 6.96338 7.03138 7.20687 7.57646 7.75710 8.41263 9.08763 9.71642 10.26757 11.10835 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015513 B = 0.003255 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.457607 B = 8598.934063 C = 9382.558179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.039 4.039 3 C -0.145 4.145 4 C -0.021 4.021 5 C -0.662 4.662 6 S 2.481 3.519 7 O -0.945 6.945 8 O -0.941 6.941 9 C -0.581 4.581 10 C -0.132 4.132 11 C 0.154 3.846 12 N -0.551 5.551 13 C -0.259 4.259 14 H 0.068 0.932 15 C 0.011 3.989 16 N -0.884 5.884 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.117 3.883 22 C -0.196 4.196 23 C -0.220 4.220 24 C -0.019 4.019 25 C -0.144 4.144 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.130 0.870 30 H 0.142 0.858 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.031 0.969 37 H 0.256 0.744 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.143 0.857 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.723 5.569 -7.477 18.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.039 4.039 3 C -0.164 4.164 4 C -0.040 4.040 5 C -0.748 4.748 6 S 2.663 3.337 7 O -0.942 6.942 8 O -0.938 6.938 9 C -0.713 4.713 10 C -0.174 4.174 11 C 0.026 3.974 12 N -0.267 5.267 13 C -0.388 4.388 14 H 0.086 0.914 15 C -0.189 4.189 16 N -0.526 5.526 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.215 1.215 20 H -0.205 1.205 21 C 0.008 3.992 22 C -0.234 4.234 23 C -0.261 4.261 24 C -0.038 4.038 25 C -0.163 4.163 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.148 0.852 30 H 0.159 0.841 31 H 0.153 0.847 32 H 0.148 0.852 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.123 0.877 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.160 0.840 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.323 5.425 -8.094 18.159 hybrid contribution -0.446 -0.898 0.482 1.112 sum -15.770 4.527 -7.612 18.086 Atomic orbital electron populations 1.20923 0.90724 1.03366 1.02840 1.20255 0.96390 0.93403 0.93859 1.21166 0.94220 0.97900 1.03077 1.20975 0.94634 0.96839 0.91510 1.30820 1.26974 0.99276 1.17686 1.06153 0.73822 0.74714 0.79058 1.93529 1.81881 1.44579 1.74237 1.93552 1.81719 1.44343 1.74172 1.30194 1.08122 1.11682 1.21328 1.22159 0.87223 1.02859 1.05172 1.20959 0.84022 1.02699 0.89715 1.43442 1.01662 0.99922 1.81691 1.19087 1.03405 0.87651 1.28694 0.91429 1.25130 0.99640 0.99243 0.94924 1.70033 1.28035 1.30002 1.24537 0.86489 0.78526 0.84241 0.78394 1.20585 1.21493 1.20475 1.21264 0.90308 0.90423 0.97199 1.23044 0.95617 1.02142 1.02608 1.23356 1.09051 0.99609 0.94115 1.21016 0.94663 0.96967 0.91174 1.21183 0.94227 0.97946 1.02914 0.90510 0.90992 0.91017 0.85181 0.84074 0.84712 0.85175 0.91865 0.90283 0.87709 0.95007 0.93423 0.89368 0.88426 0.90670 0.91183 0.89017 0.83960 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.01 36.01 0.36 -0.38 16 2 C -0.04 -0.36 5.88 -104.62 -0.62 -0.98 16 3 C -0.14 -1.41 9.70 -39.59 -0.38 -1.79 16 4 C -0.02 -0.24 9.47 -39.59 -0.37 -0.61 16 5 C -0.66 -8.49 5.66 -39.58 -0.22 -8.72 16 6 S 2.48 36.82 5.16 -107.50 -0.55 36.26 16 7 O -0.95 -16.07 17.13 -57.54 -0.99 -17.05 16 8 O -0.94 -16.86 17.12 -57.54 -0.98 -17.85 16 9 C -0.58 -8.28 5.98 37.16 0.22 -8.05 16 10 C -0.13 -2.46 5.55 -26.73 -0.15 -2.61 16 11 C 0.15 3.36 5.34 -4.04 -0.02 3.34 16 12 N -0.55 -13.22 2.78 -165.67 -0.46 -13.68 16 13 C -0.26 -6.79 8.63 -15.06 -0.13 -6.92 16 14 H 0.07 1.78 6.55 -52.49 -0.34 1.43 16 15 C 0.01 0.29 4.96 -17.43 -0.09 0.21 16 16 N -0.88 -24.22 11.33 55.49 0.63 -23.59 16 17 Si 0.89 21.05 29.61 -169.99 -5.03 16.02 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.12 2.47 6.56 -67.93 -0.45 2.02 16 22 C -0.20 -3.84 9.80 -26.69 -0.26 -4.10 16 23 C -0.22 -4.44 10.36 -26.70 -0.28 -4.72 16 24 C -0.02 -0.23 9.47 -39.58 -0.37 -0.61 16 25 C -0.14 -1.45 9.70 -39.58 -0.38 -1.84 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 28 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 29 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 30 H 0.14 1.43 7.57 -52.48 -0.40 1.03 16 31 H 0.13 1.76 8.14 -51.92 -0.42 1.34 16 32 H 0.13 1.50 8.14 -51.92 -0.42 1.08 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.11 2.55 5.35 -51.93 -0.28 2.28 16 36 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 37 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 38 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 39 H 0.10 2.08 6.37 -51.93 -0.33 1.75 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 43 H 0.14 1.58 7.56 -52.49 -0.40 1.19 16 44 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 376.88 15.07 5.68 5.68 Total: -1.00 -32.90 376.88 -11.65 -44.55 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.79 Total: 5.42 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: -3.14 Total: -35.76 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.17 Total: -37.27 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -1.97 Total: -34.90 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Atomic # 16 Polarization: 36.82 SS G_CDS: -0.55 Total: 36.26 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.90 -11.65 -44.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271627184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.478 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds