Wall clock time and date at job start Tue Mar 31 2020 14:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38259 * 120.00097 * 2 1 4 4 C 1.38203 * 120.00063 * 180.02562 * 3 2 1 5 5 C 1.38262 * 120.00190 * 359.76477 * 4 3 2 6 6 C 1.38213 * 119.99554 * 0.46673 * 5 4 3 7 7 S 1.76205 * 119.99975 * 179.78812 * 6 5 4 8 8 O 1.42101 * 104.27822 * 153.65277 * 7 6 5 9 9 O 1.42098 * 104.27448 * 25.79631 * 7 6 5 10 10 C 1.81397 * 104.44832 * 269.72424 * 7 6 5 11 11 C 1.52998 * 109.47034 * 179.97438 * 10 7 6 12 12 C 1.52997 * 109.47232 * 180.02562 * 11 10 7 13 13 N 1.46496 * 109.47499 * 179.97438 * 12 11 10 14 14 C 1.36943 * 120.00274 * 270.00442 * 13 12 11 15 15 H 1.07997 * 120.00300 * 144.92526 * 14 13 12 16 16 C 1.38817 * 119.99408 * 324.92321 * 14 13 12 17 17 N 1.31620 * 120.00119 * 337.93451 * 16 14 13 18 18 Si 1.86796 * 119.99584 * 157.93810 * 16 14 13 19 19 H 1.48491 * 109.47473 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47099 * 120.00190 * 18 16 14 21 21 H 1.48498 * 109.47119 * 239.99265 * 18 16 14 22 22 C 1.46504 * 120.00237 * 89.99677 * 13 12 11 23 23 C 1.53000 * 117.49921 * 183.24237 * 22 13 12 24 24 C 1.52998 * 117.49703 * 114.57839 * 22 13 12 25 25 C 1.38210 * 119.99826 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47749 * 270.02496 * 1 2 3 27 27 H 1.09003 * 109.47597 * 30.02788 * 1 2 3 28 28 H 1.08998 * 109.47450 * 150.02618 * 1 2 3 29 29 H 1.08000 * 119.99631 * 359.97438 * 3 2 1 30 30 H 1.07995 * 120.00171 * 179.97438 * 4 3 2 31 31 H 1.07995 * 120.00615 * 180.25612 * 5 4 3 32 32 H 1.09005 * 109.47119 * 59.99871 * 10 7 6 33 33 H 1.08992 * 109.47222 * 299.99923 * 10 7 6 34 34 H 1.09005 * 109.47181 * 60.00021 * 11 10 7 35 35 H 1.09004 * 109.47441 * 300.00150 * 11 10 7 36 36 H 1.09005 * 109.47091 * 59.99879 * 12 11 10 37 37 H 1.08998 * 109.47356 * 300.00334 * 12 11 10 38 38 H 0.96995 * 119.99672 * 175.91349 * 17 16 14 39 39 H 1.09004 * 115.54877 * 328.91115 * 22 13 12 40 40 H 1.08998 * 117.50153 * 359.97438 * 23 22 13 41 41 H 1.08995 * 117.49708 * 145.02504 * 23 22 13 42 42 H 1.08995 * 117.49988 * 214.98174 * 24 22 13 43 43 H 1.08997 * 117.49880 * 359.97438 * 24 22 13 44 44 H 1.08004 * 120.00107 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5803 1.1973 -0.0005 5 6 4.2717 0.0000 0.0038 6 6 3.5806 -1.1970 -0.0010 7 16 4.4616 -2.7230 -0.0011 8 8 3.5659 -3.6447 0.6051 9 8 5.7084 -2.4077 0.6032 10 6 4.6866 -3.1156 -1.7577 11 6 5.4491 -4.4352 -1.8917 12 6 5.6395 -4.7661 -3.3732 13 7 6.3701 -6.0294 -3.5016 14 6 7.7382 -6.0261 -3.5622 15 1 8.3008 -6.8286 -3.1086 16 6 8.4018 -4.9911 -4.2067 17 7 7.7737 -4.2676 -5.1091 18 14 10.1863 -4.6253 -3.7933 19 1 10.6584 -5.5749 -2.7539 20 1 11.0179 -4.7739 -5.0147 21 1 10.3013 -3.2357 -3.2825 22 6 5.6372 -7.2963 -3.5650 23 6 6.4589 -8.5857 -3.6223 24 6 5.7172 -8.0942 -4.8680 25 6 2.1980 -1.1970 0.0005 26 1 -0.3634 0.0004 1.0276 27 1 -0.3634 0.8897 -0.5143 28 1 -0.3634 -0.8902 -0.5134 29 1 1.6583 2.1326 -0.0004 30 1 4.1203 2.1326 -0.0010 31 1 5.3516 -0.0001 0.0076 32 1 5.2536 -2.3183 -2.2384 33 1 3.7122 -3.2083 -2.2370 34 1 4.8825 -5.2327 -1.4108 35 1 6.4237 -4.3421 -1.4124 36 1 6.2063 -3.9685 -3.8537 37 1 4.6652 -4.8591 -3.8529 38 1 8.2179 -3.5076 -5.5164 39 1 4.6963 -7.3232 -3.0153 40 1 7.5448 -8.4913 -3.6133 41 1 6.0584 -9.4608 -3.1108 42 1 4.8291 -8.6463 -5.1754 43 1 6.3147 -7.6763 -5.6782 44 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274276944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:12 Heat of formation + Delta-G solvation = -4.893791 kcal Electronic energy + Delta-G solvation = -24916.092794 eV Core-core repulsion = 21348.113109 eV Total energy + Delta-G solvation = -3567.979684 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.51786 -37.18500 -36.90455 -35.74493 -34.49659 -33.14285 -32.58537 -31.45067 -30.13325 -27.26375 -26.11605 -24.01130 -23.35699 -22.04722 -21.47734 -20.99584 -19.71040 -18.70833 -17.60865 -16.64729 -16.17418 -16.09346 -15.76400 -15.43565 -15.13860 -14.63780 -14.47871 -14.20917 -14.10935 -13.65111 -13.44025 -12.93563 -12.68827 -12.60232 -12.47462 -12.28307 -12.04193 -11.88753 -11.81750 -11.69949 -11.42963 -11.18025 -11.09960 -10.93628 -10.74183 -10.71272 -10.44782 -10.19349 -9.93168 -9.70093 -9.61857 -9.48443 -9.26819 -9.01507 -8.52242 -6.64339 -5.85698 -3.44941 0.18540 0.69026 1.06355 3.02612 3.25764 3.32746 3.42282 3.45639 4.02321 4.21283 4.40659 4.52222 4.59095 4.75563 4.86673 4.95288 4.97996 5.03682 5.06553 5.27481 5.29155 5.32565 5.41645 5.46392 5.63131 5.74743 5.79613 5.89610 5.91215 6.03572 6.07175 6.08563 6.17279 6.24922 6.34370 6.49020 6.54368 6.63046 6.64900 6.95557 7.02731 7.20337 7.57043 7.75807 8.40721 9.08199 9.71055 10.26053 11.10169 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.003373 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.903638 B = 8298.581286 C = 9160.569186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.110 4.110 3 C -0.073 4.073 4 C -0.137 4.137 5 C -0.030 4.030 6 C -0.651 4.651 7 S 2.479 3.521 8 O -0.944 6.944 9 O -0.940 6.940 10 C -0.581 4.581 11 C -0.132 4.132 12 C 0.154 3.846 13 N -0.551 5.551 14 C -0.258 4.258 15 H 0.069 0.931 16 C 0.011 3.989 17 N -0.884 5.884 18 Si 0.894 3.106 19 H -0.274 1.274 20 H -0.289 1.289 21 H -0.285 1.285 22 C 0.117 3.883 23 C -0.195 4.195 24 C -0.220 4.220 25 C -0.027 4.027 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.032 0.968 38 H 0.255 0.745 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.140 9.852 7.497 18.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.111 4.111 3 C -0.091 4.091 4 C -0.156 4.156 5 C -0.049 4.049 6 C -0.736 4.736 7 S 2.661 3.339 8 O -0.942 6.942 9 O -0.937 6.937 10 C -0.713 4.713 11 C -0.174 4.174 12 C 0.026 3.974 13 N -0.268 5.268 14 C -0.387 4.387 15 H 0.087 0.913 16 C -0.190 4.190 17 N -0.526 5.526 18 Si 0.723 3.277 19 H -0.198 1.198 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.008 3.992 23 C -0.234 4.234 24 C -0.261 4.261 25 C -0.046 4.046 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.110 0.890 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.818 9.568 8.128 17.942 hybrid contribution 0.589 0.929 -0.492 1.205 sum -12.229 10.497 7.636 17.834 Atomic orbital electron populations 1.20816 0.90509 1.03197 1.02664 1.20060 0.96565 0.93159 1.01305 1.21334 0.94455 0.97733 0.95546 1.21292 0.94431 0.98345 1.01556 1.21021 1.00598 0.91148 0.92102 1.30851 1.06039 1.20161 1.16590 1.06209 0.74491 0.74060 0.79109 1.93532 1.65036 1.61358 1.74231 1.93553 1.42471 1.83485 1.74202 1.30188 1.10542 1.09310 1.21251 1.22158 0.99287 0.90780 1.05180 1.20959 0.95368 0.91383 0.89698 1.43462 1.02526 0.99103 1.81663 1.19176 0.81280 1.09634 1.28624 0.91330 1.25133 0.97949 1.00917 0.94975 1.70048 1.38029 1.19836 1.24682 0.86363 0.84947 0.78386 0.78021 1.19829 1.21590 1.21129 1.21267 0.95357 0.85396 0.97199 1.23042 1.00210 0.97519 1.02601 1.23356 1.01840 1.06818 0.94106 1.20875 0.92065 0.98844 0.92767 0.90927 0.91332 0.91036 0.85445 0.85061 0.84000 0.84683 0.85159 0.91843 0.90284 0.87694 0.94998 0.93523 0.89366 0.88429 0.90666 0.91184 0.89021 0.84140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.11 -1.09 5.88 -104.63 -0.62 -1.70 16 3 C -0.07 -0.66 9.70 -39.59 -0.38 -1.05 16 4 C -0.14 -1.36 10.05 -39.59 -0.40 -1.75 16 5 C -0.03 -0.36 9.47 -39.58 -0.37 -0.73 16 6 C -0.65 -8.38 5.66 -39.58 -0.22 -8.60 16 7 S 2.48 36.78 5.16 -107.50 -0.55 36.22 16 8 O -0.94 -16.03 17.13 -57.54 -0.99 -17.01 16 9 O -0.94 -16.80 17.12 -57.54 -0.98 -17.79 16 10 C -0.58 -8.25 5.98 37.16 0.22 -8.03 16 11 C -0.13 -2.45 5.55 -26.73 -0.15 -2.60 16 12 C 0.15 3.35 5.34 -4.05 -0.02 3.33 16 13 N -0.55 -13.21 2.78 -165.66 -0.46 -13.67 16 14 C -0.26 -6.75 8.63 -15.05 -0.13 -6.88 16 15 H 0.07 1.81 6.55 -52.49 -0.34 1.46 16 16 C 0.01 0.28 4.96 -17.43 -0.09 0.19 16 17 N -0.88 -24.19 11.33 55.49 0.63 -23.56 16 18 Si 0.89 21.02 29.61 -169.99 -5.03 15.99 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.12 2.45 6.56 -67.93 -0.45 2.01 16 23 C -0.20 -3.82 9.80 -26.69 -0.26 -4.08 16 24 C -0.22 -4.42 10.36 -26.69 -0.28 -4.70 16 25 C -0.03 -0.31 9.13 -39.58 -0.36 -0.67 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 28 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 30 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.14 1.58 7.56 -52.49 -0.40 1.18 16 32 H 0.13 1.76 8.14 -51.92 -0.42 1.34 16 33 H 0.13 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 36 H 0.11 2.56 5.35 -51.93 -0.28 2.28 16 37 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 38 H 0.25 6.71 8.32 -40.82 -0.34 6.37 16 39 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 40 H 0.10 2.07 6.37 -51.93 -0.33 1.74 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 44 H 0.14 1.47 7.57 -52.48 -0.40 1.08 16 LS Contribution 376.87 15.07 5.68 5.68 Total: -1.00 -32.83 376.87 -11.65 -44.48 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.79 Total: 5.37 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: -3.14 Total: -35.71 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.17 Total: -37.23 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -1.97 Total: -34.80 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Atomic # 16 Polarization: 36.78 SS G_CDS: -0.55 Total: 36.22 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.83 -11.65 -44.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274276944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.582 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds