Wall clock time and date at job start Tue Mar 31 2020 14:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38259 * 120.00097 * 2 1 4 4 C 1.38203 * 120.00063 * 180.02562 * 3 2 1 5 5 C 1.38262 * 120.00190 * 359.76477 * 4 3 2 6 6 C 1.38213 * 119.99554 * 0.46673 * 5 4 3 7 7 S 1.76205 * 119.99975 * 179.78812 * 6 5 4 8 8 O 1.42101 * 104.27822 * 153.65277 * 7 6 5 9 9 O 1.42098 * 104.27448 * 25.79631 * 7 6 5 10 10 C 1.81397 * 104.44832 * 269.72424 * 7 6 5 11 11 C 1.52998 * 109.47034 * 179.97438 * 10 7 6 12 12 C 1.52997 * 109.47232 * 180.02562 * 11 10 7 13 13 N 1.46496 * 109.47499 * 179.97438 * 12 11 10 14 14 C 1.36943 * 120.00274 * 270.00442 * 13 12 11 15 15 H 1.07997 * 120.00300 * 144.92526 * 14 13 12 16 16 C 1.38817 * 119.99408 * 324.92321 * 14 13 12 17 17 N 1.31620 * 120.00119 * 337.93451 * 16 14 13 18 18 Si 1.86796 * 119.99584 * 157.93810 * 16 14 13 19 19 H 1.48491 * 109.47473 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47099 * 120.00190 * 18 16 14 21 21 H 1.48498 * 109.47119 * 239.99265 * 18 16 14 22 22 C 1.46504 * 120.00237 * 89.99677 * 13 12 11 23 23 C 1.53000 * 117.49921 * 183.24237 * 22 13 12 24 24 C 1.52998 * 117.49703 * 114.57839 * 22 13 12 25 25 C 1.38210 * 119.99826 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47749 * 270.02496 * 1 2 3 27 27 H 1.09003 * 109.47597 * 30.02788 * 1 2 3 28 28 H 1.08998 * 109.47450 * 150.02618 * 1 2 3 29 29 H 1.08000 * 119.99631 * 359.97438 * 3 2 1 30 30 H 1.07995 * 120.00171 * 179.97438 * 4 3 2 31 31 H 1.07995 * 120.00615 * 180.25612 * 5 4 3 32 32 H 1.09005 * 109.47119 * 59.99871 * 10 7 6 33 33 H 1.08992 * 109.47222 * 299.99923 * 10 7 6 34 34 H 1.09005 * 109.47181 * 60.00021 * 11 10 7 35 35 H 1.09004 * 109.47441 * 300.00150 * 11 10 7 36 36 H 1.09005 * 109.47091 * 59.99879 * 12 11 10 37 37 H 1.08998 * 109.47356 * 300.00334 * 12 11 10 38 38 H 0.96995 * 119.99672 * 175.91349 * 17 16 14 39 39 H 1.09004 * 115.54877 * 328.91115 * 22 13 12 40 40 H 1.08998 * 117.50153 * 359.97438 * 23 22 13 41 41 H 1.08995 * 117.49708 * 145.02504 * 23 22 13 42 42 H 1.08995 * 117.49988 * 214.98174 * 24 22 13 43 43 H 1.08997 * 117.49880 * 359.97438 * 24 22 13 44 44 H 1.08004 * 120.00107 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5803 1.1973 -0.0005 5 6 4.2717 0.0000 0.0038 6 6 3.5806 -1.1970 -0.0010 7 16 4.4616 -2.7230 -0.0011 8 8 3.5659 -3.6447 0.6051 9 8 5.7084 -2.4077 0.6032 10 6 4.6866 -3.1156 -1.7577 11 6 5.4491 -4.4352 -1.8917 12 6 5.6395 -4.7661 -3.3732 13 7 6.3701 -6.0294 -3.5016 14 6 7.7382 -6.0261 -3.5622 15 1 8.3008 -6.8286 -3.1086 16 6 8.4018 -4.9911 -4.2067 17 7 7.7737 -4.2676 -5.1091 18 14 10.1863 -4.6253 -3.7933 19 1 10.6584 -5.5749 -2.7539 20 1 11.0179 -4.7739 -5.0147 21 1 10.3013 -3.2357 -3.2825 22 6 5.6372 -7.2963 -3.5650 23 6 6.4589 -8.5857 -3.6223 24 6 5.7172 -8.0942 -4.8680 25 6 2.1980 -1.1970 0.0005 26 1 -0.3634 0.0004 1.0276 27 1 -0.3634 0.8897 -0.5143 28 1 -0.3634 -0.8902 -0.5134 29 1 1.6583 2.1326 -0.0004 30 1 4.1203 2.1326 -0.0010 31 1 5.3516 -0.0001 0.0076 32 1 5.2536 -2.3183 -2.2384 33 1 3.7122 -3.2083 -2.2370 34 1 4.8825 -5.2327 -1.4108 35 1 6.4237 -4.3421 -1.4124 36 1 6.2063 -3.9685 -3.8537 37 1 4.6652 -4.8591 -3.8529 38 1 8.2179 -3.5076 -5.5164 39 1 4.6963 -7.3232 -3.0153 40 1 7.5448 -8.4913 -3.6133 41 1 6.0584 -9.4608 -3.1108 42 1 4.8291 -8.6463 -5.1754 43 1 6.3147 -7.6763 -5.6782 44 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274276944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:11 Heat of formation + Delta-G solvation = -24.081044 kcal Electronic energy + Delta-G solvation = -24916.924815 eV Core-core repulsion = 21348.113109 eV Total energy + Delta-G solvation = -3568.811706 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.30113 -38.89066 -38.19573 -37.04224 -36.07803 -34.35309 -33.86556 -32.27030 -31.90046 -27.92708 -27.81368 -25.69676 -24.31390 -23.11283 -22.85507 -22.45200 -21.47567 -19.87225 -18.66507 -18.26654 -17.45503 -17.24201 -17.04284 -16.89329 -16.35705 -16.22409 -15.78352 -15.27852 -15.19186 -14.76767 -14.57285 -14.25034 -14.20090 -13.76420 -13.35514 -13.29661 -13.19665 -13.15964 -13.09962 -13.03732 -12.80727 -12.70811 -12.66865 -12.53225 -12.18039 -12.12793 -11.95364 -11.76778 -11.52658 -11.35828 -11.26079 -10.88159 -10.48062 -10.32072 -9.79328 -8.55379 -7.82014 -5.46097 -0.96953 -0.18318 0.26927 1.42542 1.47761 1.56254 1.92069 2.40579 2.48556 2.87507 3.12084 3.13359 3.38609 3.44277 3.73112 3.87713 3.92034 3.93107 4.05816 4.28893 4.31290 4.34601 4.37572 4.48849 4.50430 4.55764 4.62623 4.80692 4.83996 4.87008 4.90726 4.94948 4.96908 5.08039 5.08710 5.23199 5.28345 5.31487 5.38389 5.44802 5.54924 5.68313 5.81948 5.87980 6.44687 7.14060 7.83879 8.32742 9.09287 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.003373 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.903638 B = 8298.581286 C = 9160.569186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.113 4.113 3 C -0.068 4.068 4 C -0.138 4.138 5 C -0.053 4.053 6 C -0.658 4.658 7 S 2.496 3.504 8 O -0.969 6.969 9 O -0.978 6.978 10 C -0.576 4.576 11 C -0.129 4.129 12 C 0.152 3.848 13 N -0.572 5.572 14 C -0.262 4.262 15 H 0.060 0.940 16 C -0.033 4.033 17 N -0.910 5.910 18 Si 0.944 3.056 19 H -0.271 1.271 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.096 3.904 23 C -0.185 4.185 24 C -0.214 4.214 25 C -0.045 4.045 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.163 0.837 30 H 0.158 0.842 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.162 0.838 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.253 0.747 39 H 0.115 0.885 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.055 0.945 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.435 11.019 8.098 20.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.114 4.114 3 C -0.086 4.086 4 C -0.157 4.157 5 C -0.072 4.072 6 C -0.747 4.747 7 S 2.682 3.318 8 O -0.966 6.966 9 O -0.975 6.975 10 C -0.708 4.708 11 C -0.170 4.170 12 C 0.025 3.975 13 N -0.289 5.289 14 C -0.392 4.392 15 H 0.077 0.923 16 C -0.230 4.230 17 N -0.554 5.554 18 Si 0.772 3.228 19 H -0.195 1.195 20 H -0.218 1.218 21 H -0.211 1.211 22 C -0.012 4.012 23 C -0.223 4.223 24 C -0.255 4.255 25 C -0.064 4.064 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.180 0.820 30 H 0.176 0.824 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.180 0.820 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.133 0.867 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.121 0.879 43 H 0.073 0.927 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.092 10.677 8.735 20.447 hybrid contribution 1.169 0.631 -0.656 1.481 sum -13.923 11.308 8.079 19.672 Atomic orbital electron populations 1.20904 0.88341 1.04407 1.03584 1.20458 0.98218 0.92694 0.99987 1.21804 0.94299 0.98936 0.93538 1.21657 0.95156 0.98503 1.00351 1.21214 1.00893 0.91847 0.93229 1.30316 1.06465 1.18647 1.19249 1.05183 0.73597 0.74399 0.78581 1.93491 1.65317 1.62976 1.74864 1.93501 1.44563 1.84289 1.75179 1.30091 1.11839 1.07423 1.21440 1.21917 0.98988 0.93364 1.02755 1.20898 0.95103 0.90021 0.91471 1.43680 1.02158 1.00717 1.82364 1.19290 0.82799 1.09300 1.27807 0.92265 1.25682 1.00757 1.01288 0.95301 1.70142 1.39132 1.20359 1.25792 0.85582 0.81628 0.78024 0.77565 1.19534 1.21772 1.21125 1.21603 0.96575 0.84748 0.98266 1.23051 0.98849 0.98081 1.02306 1.23261 1.02567 1.06796 0.92849 1.21109 0.91629 1.00190 0.93489 0.90033 0.89410 0.90651 0.81973 0.82390 0.84203 0.83673 0.82014 0.90918 0.92627 0.90364 0.93788 0.93799 0.86738 0.90813 0.87103 0.87868 0.92652 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 10.01 71.24 0.71 -0.52 16 2 C -0.11 -1.91 5.88 -19.87 -0.12 -2.03 16 3 C -0.07 -1.00 9.70 22.27 0.22 -0.79 16 4 C -0.14 -2.37 10.05 22.27 0.22 -2.15 16 5 C -0.05 -1.21 9.47 22.27 0.21 -1.00 16 6 C -0.66 -16.47 5.66 22.27 0.13 -16.35 16 7 S 2.50 74.63 5.16 -56.49 -0.29 74.33 16 8 O -0.97 -32.94 17.13 -127.65 -2.19 -35.13 16 9 O -0.98 -36.10 17.12 -127.65 -2.19 -38.28 16 10 C -0.58 -16.18 5.98 71.98 0.43 -15.75 16 11 C -0.13 -4.82 5.55 30.59 0.17 -4.65 16 12 C 0.15 6.71 5.34 86.38 0.46 7.17 16 13 N -0.57 -27.75 2.78 -678.03 -1.88 -29.64 16 14 C -0.26 -14.06 8.63 84.03 0.73 -13.34 16 15 H 0.06 3.22 6.55 -2.91 -0.02 3.21 16 16 C -0.03 -1.78 4.96 84.86 0.42 -1.35 16 17 N -0.91 -51.27 11.33 21.65 0.25 -51.02 16 18 Si 0.94 44.29 29.61 68.60 2.03 46.32 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 21 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 22 C 0.10 3.96 6.56 44.99 0.30 4.25 16 23 C -0.18 -7.02 9.80 30.62 0.30 -6.72 16 24 C -0.21 -8.39 10.36 30.62 0.32 -8.08 16 25 C -0.05 -0.99 9.13 22.27 0.20 -0.78 16 26 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.09 0.61 8.09 -2.39 -0.02 0.59 16 28 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 29 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 30 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 31 H 0.14 3.14 7.56 -2.91 -0.02 3.12 16 32 H 0.15 3.80 8.14 -2.39 -0.02 3.78 16 33 H 0.16 3.48 8.14 -2.39 -0.02 3.46 16 34 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 35 H 0.05 2.30 8.14 -2.38 -0.02 2.29 16 36 H 0.08 3.92 5.35 -2.38 -0.01 3.91 16 37 H 0.04 1.78 8.07 -2.39 -0.02 1.76 16 38 H 0.25 13.70 8.32 -92.71 -0.77 12.93 16 39 H 0.12 4.06 8.14 -2.38 -0.02 4.05 16 40 H 0.07 3.16 6.37 -2.39 -0.02 3.14 16 41 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 42 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 43 H 0.05 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.15 2.89 7.57 -2.91 -0.02 2.87 16 Total: -1.00 -72.77 376.87 1.40 -71.36 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.98 Total: 24.13 kcal Atomic # 6 Polarization: -66.78 SS G_CDS: 4.70 Total: -62.08 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -1.64 Total: -80.66 kcal Atomic # 8 Polarization: -69.04 SS G_CDS: -4.37 Total: -73.41 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 74.63 SS G_CDS: -0.29 Total: 74.33 kcal Total: -72.77 1.40 -71.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274276944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.281 kcal (2) G-P(sol) polarization free energy of solvation -72.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds