Wall clock time and date at job start Tue Mar 31 2020 13:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38010 * 119.74503 * 2 1 4 4 C 1.38224 * 119.71846 * 180.02562 * 3 2 1 5 5 C 1.37953 * 119.82180 * 0.20129 * 4 3 2 6 6 C 1.38935 * 120.58927 * 359.94402 * 5 4 3 7 7 C 1.37721 * 119.51398 * 359.69017 * 6 5 4 8 8 C 1.50405 * 122.32746 * 180.55627 * 7 6 5 9 9 N 1.46692 * 109.89198 * 349.21530 * 8 7 6 10 10 S 1.65597 * 121.34433 * 224.25145 * 9 8 7 11 11 O 1.42104 * 104.27664 * 153.64408 * 10 9 8 12 12 O 1.42108 * 104.27669 * 25.79281 * 10 9 8 13 13 C 1.81391 * 104.45133 * 269.71864 * 10 9 8 14 14 C 1.53006 * 109.47235 * 180.02562 * 13 10 9 15 15 C 1.52997 * 109.47127 * 180.02562 * 14 13 10 16 16 C 1.50696 * 109.47055 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00290 * 0.02562 * 16 15 14 18 18 C 1.37887 * 120.00079 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99685 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00129 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46879 * 60.00177 * 20 18 16 22 22 H 1.48494 * 109.47196 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47151 * 300.00589 * 20 18 16 24 24 C 1.47236 * 117.30491 * 43.97922 * 9 8 7 25 25 C 1.50601 * 117.62051 * 179.62440 * 6 5 4 26 26 H 1.08998 * 109.47609 * 269.97679 * 1 2 3 27 27 H 1.08999 * 109.47459 * 29.97803 * 1 2 3 28 28 H 1.09000 * 109.47313 * 149.97895 * 1 2 3 29 29 H 1.08001 * 120.13879 * 0.02562 * 3 2 1 30 30 H 1.07992 * 120.08673 * 180.17762 * 4 3 2 31 31 H 1.08004 * 119.70187 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.41281 * 229.03034 * 8 7 6 33 33 H 1.09002 * 109.23527 * 109.28441 * 8 7 6 34 34 H 1.09001 * 109.47423 * 60.00430 * 13 10 9 35 35 H 1.09001 * 109.47260 * 300.00293 * 13 10 9 36 36 H 1.09001 * 109.47002 * 299.99604 * 14 13 10 37 37 H 1.08993 * 109.46955 * 60.00042 * 14 13 10 38 38 H 1.09001 * 109.47289 * 299.99953 * 15 14 13 39 39 H 1.09004 * 109.47261 * 59.99697 * 15 14 13 40 40 H 0.96999 * 119.99910 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.77539 * 55.53546 * 24 9 8 42 42 H 1.09002 * 109.77497 * 176.33406 * 24 9 8 43 43 H 1.08997 * 109.19875 * 39.96369 * 25 6 5 44 44 H 1.09005 * 109.15941 * 280.65291 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1916 1.1983 0.0000 4 6 3.5739 1.1976 -0.0005 5 6 4.2594 0.0005 -0.0053 6 6 3.5728 -1.2074 -0.0084 7 6 2.1956 -1.2050 -0.0002 8 6 1.3891 -2.4745 0.0094 9 7 2.2637 -3.6234 -0.2495 10 16 1.8194 -4.8249 -1.2989 11 8 3.0520 -5.3611 -1.7599 12 8 0.9155 -4.1917 -2.1942 13 6 0.9481 -6.0319 -0.2624 14 6 0.4826 -7.2051 -1.1273 15 6 -0.2529 -8.2228 -0.2531 16 6 -0.7119 -9.3779 -1.1050 17 1 -0.4999 -9.3857 -2.1640 18 6 -1.4017 -10.4256 -0.5324 19 7 -1.6594 -10.4164 0.7573 20 14 -1.9701 -11.8579 -1.5883 21 1 -0.7921 -12.5060 -2.2188 22 1 -2.6840 -12.8456 -0.7399 23 1 -2.8864 -11.3603 -2.6457 24 6 3.5551 -3.6618 0.4566 25 6 4.3878 -2.4737 -0.0222 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3634 0.8901 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 1.6497 2.1325 0.0004 30 1 4.1157 2.1318 0.0024 31 1 5.3394 0.0022 -0.0061 32 1 0.6213 -2.4218 -0.7624 33 1 0.9155 -2.5917 0.9842 34 1 0.0837 -5.5561 0.2009 35 1 1.6209 -6.3974 0.5134 36 1 -0.1901 -6.8399 -1.9033 37 1 1.3472 -7.6807 -1.5901 38 1 0.4194 -8.5880 0.5233 39 1 -1.1175 -7.7468 0.2096 40 1 -2.1450 -11.1532 1.1601 41 1 3.3901 -3.5872 1.5314 42 1 4.0738 -4.5924 0.2262 43 1 5.2497 -2.3524 0.6338 44 1 4.7344 -2.6650 -1.0378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276992291.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:28 Heat of formation + Delta-G solvation = -65.818672 kcal Electronic energy + Delta-G solvation = -25082.074830 eV Core-core repulsion = 21511.453245 eV Total energy + Delta-G solvation = -3570.621585 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.34967 -37.03458 -36.82810 -35.75747 -34.68072 -34.08123 -32.19715 -31.55903 -30.30735 -27.82552 -27.09350 -25.35357 -23.97615 -23.66050 -21.14399 -20.80938 -20.36012 -18.55425 -17.64910 -16.84017 -16.65170 -16.05455 -15.84371 -15.42048 -15.30788 -14.72201 -14.61686 -14.49108 -14.14012 -13.86895 -13.58412 -13.16664 -12.94272 -12.70606 -12.56238 -12.50717 -12.28935 -12.21386 -11.97437 -11.80383 -11.78263 -11.76084 -11.52165 -11.24956 -11.06295 -10.90537 -10.88477 -10.82471 -10.44647 -9.96424 -9.57009 -9.27983 -9.01392 -8.75508 -8.71845 -8.41433 -6.06606 -4.09795 0.37756 1.13119 1.15366 2.67570 3.31572 3.35452 3.38660 3.48640 3.98291 4.21064 4.32542 4.41689 4.51609 4.63342 4.71566 4.75741 4.93276 5.01965 5.10720 5.12168 5.18086 5.23842 5.29017 5.29905 5.34567 5.39819 5.45045 5.49308 5.63735 5.70514 5.84759 5.87978 5.92646 5.94741 6.21565 6.27674 6.31700 6.37486 6.42880 6.52324 6.80290 6.85344 7.55389 7.65343 7.91210 8.31624 8.96193 9.54883 11.04588 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.027101 B = 0.002636 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.938409 B =10619.004793 C =11041.398596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.079 4.079 3 C -0.124 4.124 4 C -0.117 4.117 5 C -0.128 4.128 6 C -0.062 4.062 7 C -0.087 4.087 8 C 0.156 3.844 9 N -1.007 6.007 10 S 2.599 3.401 11 O -0.957 6.957 12 O -0.958 6.958 13 C -0.607 4.607 14 C -0.106 4.106 15 C 0.031 3.969 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.058 3.942 19 N -0.896 5.896 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.121 3.879 25 C -0.097 4.097 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.262 0.738 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.158 23.376 2.848 25.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.080 4.080 3 C -0.142 4.142 4 C -0.135 4.135 5 C -0.146 4.146 6 C -0.063 4.063 7 C -0.089 4.089 8 C 0.031 3.969 9 N -0.842 5.842 10 S 2.697 3.303 11 O -0.947 6.947 12 O -0.949 6.949 13 C -0.739 4.739 14 C -0.146 4.146 15 C -0.007 4.007 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.004 4.004 25 C -0.136 4.136 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.126 0.874 33 H 0.098 0.902 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.117 0.883 43 H 0.104 0.896 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.266 23.266 2.052 25.513 hybrid contribution -0.500 -0.839 0.232 1.004 sum 9.766 22.427 2.284 24.567 Atomic orbital electron populations 1.20934 0.91030 1.03471 1.02647 1.19830 0.96172 0.92354 0.99634 1.20931 0.94302 0.97265 1.01739 1.21027 0.94382 0.97841 1.00256 1.21144 0.99750 0.91942 1.01766 1.19473 0.92791 0.94947 0.99052 1.19515 0.93322 0.94292 1.01764 1.20245 0.91836 0.82243 1.02598 1.57969 1.26725 1.35705 1.63849 1.05461 0.75066 0.74683 0.75139 1.93559 1.42859 1.79760 1.78553 1.93552 1.66828 1.73729 1.60769 1.30597 1.13782 1.14628 1.14910 1.21514 1.01081 0.93879 0.98096 1.19056 0.95015 0.92114 0.94520 1.21217 1.35947 1.04370 0.95016 0.92416 1.25022 0.95905 0.98413 0.95016 1.69947 1.40751 1.32386 1.10365 0.86610 0.78964 0.81950 0.80238 1.20102 1.21237 1.20105 1.21391 0.82820 0.99438 0.96750 1.20819 0.97618 0.91985 1.03134 0.90774 0.91315 0.90775 0.86050 0.86169 0.86184 0.87447 0.90150 0.85391 0.85372 0.91581 0.91579 0.96113 0.96111 0.92824 0.90646 0.88319 0.89589 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.52 36.00 0.34 -0.63 16 2 C -0.08 -0.78 5.88 -104.51 -0.61 -1.40 16 3 C -0.12 -1.11 9.69 -39.67 -0.38 -1.49 16 4 C -0.12 -1.01 10.05 -39.69 -0.40 -1.41 16 5 C -0.13 -1.18 9.59 -39.43 -0.38 -1.56 16 6 C -0.06 -0.66 5.76 -104.60 -0.60 -1.26 16 7 C -0.09 -0.96 5.81 -104.75 -0.61 -1.57 16 8 C 0.16 1.69 5.34 -5.23 -0.03 1.67 16 9 N -1.01 -11.98 3.19 -115.25 -0.37 -12.35 16 10 S 2.60 39.06 5.47 -107.50 -0.59 38.47 16 11 O -0.96 -16.68 16.77 -57.54 -0.96 -17.65 16 12 O -0.96 -16.92 16.62 -57.54 -0.96 -17.88 16 13 C -0.61 -9.30 6.18 37.16 0.23 -9.07 16 14 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 15 C 0.03 0.79 4.97 -27.89 -0.14 0.65 16 16 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 20 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.12 1.20 6.35 -3.75 -0.02 1.17 16 25 C -0.10 -0.92 5.86 -28.04 -0.16 -1.08 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 28 H 0.07 0.60 6.12 -51.93 -0.32 0.29 16 29 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.12 0.87 8.05 -52.48 -0.42 0.45 16 32 H 0.11 1.22 5.41 -51.93 -0.28 0.94 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.13 1.74 8.14 -51.92 -0.42 1.32 16 35 H 0.13 1.74 8.14 -51.92 -0.42 1.32 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.95 7.13 -51.93 -0.37 0.58 16 43 H 0.09 0.60 8.11 -51.93 -0.42 0.18 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -34.86 367.41 -11.79 -46.65 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -6.85 Total: -1.66 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: -3.32 Total: -31.86 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.37 Total: -38.14 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -1.92 Total: -35.52 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 39.06 SS G_CDS: -0.59 Total: 38.47 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.86 -11.79 -46.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276992291.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.168 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds