Wall clock time and date at job start Tue Mar 31 2020 13:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38010 * 119.74503 * 2 1 4 4 C 1.38224 * 119.71846 * 180.02562 * 3 2 1 5 5 C 1.37953 * 119.82180 * 0.20129 * 4 3 2 6 6 C 1.38935 * 120.58927 * 359.94402 * 5 4 3 7 7 C 1.37721 * 119.51398 * 359.69017 * 6 5 4 8 8 C 1.50405 * 122.32746 * 180.55627 * 7 6 5 9 9 N 1.46692 * 109.89198 * 349.21530 * 8 7 6 10 10 S 1.65597 * 121.34433 * 224.25145 * 9 8 7 11 11 O 1.42104 * 104.27664 * 153.64408 * 10 9 8 12 12 O 1.42108 * 104.27669 * 25.79281 * 10 9 8 13 13 C 1.81391 * 104.45133 * 269.71864 * 10 9 8 14 14 C 1.53006 * 109.47235 * 180.02562 * 13 10 9 15 15 C 1.52997 * 109.47127 * 180.02562 * 14 13 10 16 16 C 1.50696 * 109.47055 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00290 * 0.02562 * 16 15 14 18 18 C 1.37887 * 120.00079 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99685 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00129 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46879 * 60.00177 * 20 18 16 22 22 H 1.48494 * 109.47196 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47151 * 300.00589 * 20 18 16 24 24 C 1.47236 * 117.30491 * 43.97922 * 9 8 7 25 25 C 1.50601 * 117.62051 * 179.62440 * 6 5 4 26 26 H 1.08998 * 109.47609 * 269.97679 * 1 2 3 27 27 H 1.08999 * 109.47459 * 29.97803 * 1 2 3 28 28 H 1.09000 * 109.47313 * 149.97895 * 1 2 3 29 29 H 1.08001 * 120.13879 * 0.02562 * 3 2 1 30 30 H 1.07992 * 120.08673 * 180.17762 * 4 3 2 31 31 H 1.08004 * 119.70187 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.41281 * 229.03034 * 8 7 6 33 33 H 1.09002 * 109.23527 * 109.28441 * 8 7 6 34 34 H 1.09001 * 109.47423 * 60.00430 * 13 10 9 35 35 H 1.09001 * 109.47260 * 300.00293 * 13 10 9 36 36 H 1.09001 * 109.47002 * 299.99604 * 14 13 10 37 37 H 1.08993 * 109.46955 * 60.00042 * 14 13 10 38 38 H 1.09001 * 109.47289 * 299.99953 * 15 14 13 39 39 H 1.09004 * 109.47261 * 59.99697 * 15 14 13 40 40 H 0.96999 * 119.99910 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.77539 * 55.53546 * 24 9 8 42 42 H 1.09002 * 109.77497 * 176.33406 * 24 9 8 43 43 H 1.08997 * 109.19875 * 39.96369 * 25 6 5 44 44 H 1.09005 * 109.15941 * 280.65291 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1916 1.1983 0.0000 4 6 3.5739 1.1976 -0.0005 5 6 4.2594 0.0005 -0.0053 6 6 3.5728 -1.2074 -0.0084 7 6 2.1956 -1.2050 -0.0002 8 6 1.3891 -2.4745 0.0094 9 7 2.2637 -3.6234 -0.2495 10 16 1.8194 -4.8249 -1.2989 11 8 3.0520 -5.3611 -1.7599 12 8 0.9155 -4.1917 -2.1942 13 6 0.9481 -6.0319 -0.2624 14 6 0.4826 -7.2051 -1.1273 15 6 -0.2529 -8.2228 -0.2531 16 6 -0.7119 -9.3779 -1.1050 17 1 -0.4999 -9.3857 -2.1640 18 6 -1.4017 -10.4256 -0.5324 19 7 -1.6594 -10.4164 0.7573 20 14 -1.9701 -11.8579 -1.5883 21 1 -0.7921 -12.5060 -2.2188 22 1 -2.6840 -12.8456 -0.7399 23 1 -2.8864 -11.3603 -2.6457 24 6 3.5551 -3.6618 0.4566 25 6 4.3878 -2.4737 -0.0222 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3634 0.8901 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 1.6497 2.1325 0.0004 30 1 4.1157 2.1318 0.0024 31 1 5.3394 0.0022 -0.0061 32 1 0.6213 -2.4218 -0.7624 33 1 0.9155 -2.5917 0.9842 34 1 0.0837 -5.5561 0.2009 35 1 1.6209 -6.3974 0.5134 36 1 -0.1901 -6.8399 -1.9033 37 1 1.3472 -7.6807 -1.5901 38 1 0.4194 -8.5880 0.5233 39 1 -1.1175 -7.7468 0.2096 40 1 -2.1450 -11.1532 1.1601 41 1 3.3901 -3.5872 1.5314 42 1 4.0738 -4.5924 0.2262 43 1 5.2497 -2.3524 0.6338 44 1 4.7344 -2.6650 -1.0378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276992291.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:27 Heat of formation + Delta-G solvation = -87.147441 kcal Electronic energy + Delta-G solvation = -25082.999715 eV Core-core repulsion = 21511.453245 eV Total energy + Delta-G solvation = -3571.546470 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.05646 -38.31776 -37.65849 -37.06577 -36.47654 -34.77345 -34.17344 -32.31784 -31.03163 -29.66559 -27.74670 -26.20315 -25.54991 -24.69685 -22.41883 -21.78894 -21.38240 -19.66067 -18.69667 -18.57232 -17.71843 -17.32970 -16.82667 -16.53698 -16.40515 -16.19189 -15.80890 -15.32321 -15.28450 -14.64889 -14.49238 -14.31031 -14.07332 -13.85239 -13.68297 -13.54208 -13.45149 -13.33281 -13.22996 -13.13918 -12.99785 -12.73976 -12.72835 -12.65845 -12.59579 -12.23051 -12.15865 -11.76770 -11.76395 -11.56925 -11.39819 -11.12235 -10.57590 -10.09227 -9.47053 -9.39982 -8.23164 -6.34266 -0.84253 0.44359 0.46002 1.40012 1.42510 1.50485 1.59847 2.39520 2.76591 2.80434 3.07370 3.10363 3.50666 3.73342 3.77785 3.89031 3.97649 4.03086 4.09794 4.23385 4.35235 4.37445 4.46708 4.54017 4.55280 4.60071 4.63381 4.76846 4.79461 4.86636 4.92889 4.97902 5.01004 5.04026 5.11589 5.25469 5.30358 5.44233 5.49475 5.61772 5.62872 5.66411 5.77924 5.78565 6.14767 6.18904 6.81033 7.34987 8.88141 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.027101 B = 0.002636 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.938409 B =10619.004793 C =11041.398596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.092 4.092 3 C -0.132 4.132 4 C -0.120 4.120 5 C -0.136 4.136 6 C -0.081 4.081 7 C -0.110 4.110 8 C 0.151 3.849 9 N -1.001 6.001 10 S 2.623 3.377 11 O -0.982 6.982 12 O -0.987 6.987 13 C -0.605 4.605 14 C -0.107 4.107 15 C 0.032 3.968 16 C -0.554 4.554 17 H 0.060 0.940 18 C 0.003 3.997 19 N -0.930 5.930 20 Si 0.963 3.037 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.267 1.267 24 C 0.112 3.888 25 C -0.097 4.097 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.004 0.996 39 H 0.003 0.997 40 H 0.265 0.735 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.112 0.888 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.711 24.528 3.132 26.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.138 4.138 5 C -0.154 4.154 6 C -0.081 4.081 7 C -0.111 4.111 8 C 0.026 3.974 9 N -0.838 5.838 10 S 2.721 3.279 11 O -0.973 6.973 12 O -0.977 6.977 13 C -0.736 4.736 14 C -0.146 4.146 15 C -0.006 4.006 16 C -0.592 4.592 17 H 0.078 0.922 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.787 3.213 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.192 1.192 24 C -0.012 4.012 25 C -0.135 4.135 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.159 0.841 30 H 0.161 0.839 31 H 0.156 0.844 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.130 0.870 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.821 24.415 2.326 26.807 hybrid contribution -0.635 -1.089 0.191 1.275 sum 10.186 23.326 2.517 25.577 Atomic orbital electron populations 1.20972 0.90038 1.03634 1.03455 1.20096 0.97143 0.92420 0.99579 1.21245 0.94757 0.97758 1.01188 1.21374 0.94555 0.98665 0.99232 1.21414 1.00797 0.91762 1.01450 1.19703 0.92924 0.95839 0.99639 1.19657 0.93791 0.94540 1.03138 1.20415 0.91598 0.81926 1.03429 1.57661 1.27679 1.34894 1.63608 1.04492 0.74016 0.74536 0.74895 1.93521 1.43800 1.80563 1.79371 1.93511 1.67637 1.74303 1.62270 1.30537 1.15100 1.13200 1.14788 1.21327 1.00654 0.94582 0.98037 1.18952 0.94462 0.92711 0.94504 1.21712 1.36234 1.05648 0.95604 0.92199 1.25935 0.95943 1.01314 0.96325 1.70061 1.41444 1.33409 1.12020 0.85538 0.78754 0.78433 0.78597 1.19215 1.20573 1.19238 1.21687 0.81807 0.99818 0.97906 1.20851 0.98291 0.91426 1.02945 0.89585 0.90277 0.91500 0.84123 0.83899 0.84437 0.88378 0.87993 0.83606 0.83481 0.91632 0.91558 0.97785 0.97813 0.92592 0.88245 0.88246 0.87000 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 9.52 71.23 0.68 -1.13 16 2 C -0.09 -1.69 5.88 -19.79 -0.12 -1.81 16 3 C -0.13 -2.09 9.69 22.21 0.22 -1.88 16 4 C -0.12 -1.82 10.05 22.20 0.22 -1.59 16 5 C -0.14 -2.27 9.59 22.37 0.21 -2.05 16 6 C -0.08 -1.60 5.76 -19.85 -0.11 -1.71 16 7 C -0.11 -2.30 5.81 -19.95 -0.12 -2.41 16 8 C 0.15 3.14 5.34 85.50 0.46 3.59 16 9 N -1.00 -22.83 3.19 -518.53 -1.66 -24.49 16 10 S 2.62 77.95 5.47 -56.49 -0.31 77.64 16 11 O -0.98 -34.08 16.77 -127.65 -2.14 -36.22 16 12 O -0.99 -34.98 16.62 -127.65 -2.12 -37.10 16 13 C -0.61 -18.18 6.18 71.98 0.44 -17.74 16 14 C -0.11 -4.35 5.16 30.60 0.16 -4.19 16 15 C 0.03 1.65 4.97 29.85 0.15 1.80 16 16 C -0.55 -31.54 9.11 25.60 0.23 -31.31 16 17 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 18 C 0.00 0.18 5.46 84.66 0.46 0.64 16 19 N -0.93 -55.66 13.29 21.45 0.28 -55.37 16 20 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 24 C 0.11 2.04 6.35 86.17 0.55 2.59 16 25 C -0.10 -1.69 5.86 29.74 0.17 -1.52 16 26 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 28 H 0.07 1.06 6.12 -2.39 -0.01 1.04 16 29 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 30 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 31 H 0.14 1.68 8.05 -2.91 -0.02 1.66 16 32 H 0.10 2.21 5.41 -2.39 -0.01 2.20 16 33 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.15 3.83 8.14 -2.39 -0.02 3.81 16 35 H 0.15 3.83 8.14 -2.39 -0.02 3.81 16 36 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 40 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 41 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.10 1.79 7.13 -2.39 -0.02 1.78 16 43 H 0.11 1.32 8.11 -2.39 -0.02 1.30 16 44 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -75.01 367.41 0.67 -74.34 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.98 Total: 13.77 kcal Atomic # 6 Polarization: -62.32 SS G_CDS: 3.61 Total: -58.71 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -1.37 Total: -79.86 kcal Atomic # 8 Polarization: -69.06 SS G_CDS: -4.26 Total: -73.33 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: 77.95 SS G_CDS: -0.31 Total: 77.64 kcal Total: -75.01 0.67 -74.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276992291.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.809 kcal (2) G-P(sol) polarization free energy of solvation -75.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds