Wall clock time and date at job start Tue Mar 31 2020 14:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38288 * 119.97378 * 2 1 4 4 C 1.38239 * 120.11572 * 179.97438 * 3 2 1 5 5 C 1.38170 * 120.05201 * 0.04215 * 4 3 2 6 6 C 1.38705 * 119.94752 * 359.97438 * 5 4 3 7 7 O 1.35898 * 120.06154 * 180.02562 * 6 5 4 8 8 C 1.42902 * 116.99694 * 359.97438 * 7 6 5 9 9 C 1.53001 * 109.47386 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.47181 * 180.02562 * 9 8 7 11 11 N 1.46506 * 109.46748 * 180.02562 * 10 9 8 12 12 C 1.34780 * 119.99558 * 180.02562 * 11 10 9 13 13 O 1.21282 * 120.00307 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99961 * 179.97438 * 12 11 10 15 15 S 1.80998 * 109.47230 * 180.02562 * 14 12 11 16 16 C 1.76197 * 99.99767 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00552 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.00001 * 179.97438 * 16 15 14 19 19 N 1.31635 * 119.99807 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00179 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47399 * 89.99985 * 20 18 16 22 22 H 1.48505 * 109.47149 * 209.99665 * 20 18 16 23 23 H 1.48496 * 109.47419 * 329.99862 * 20 18 16 24 24 C 1.38121 * 119.97413 * 180.02562 * 2 1 3 25 25 C 1.50705 * 120.02769 * 0.27127 * 24 2 1 26 26 H 1.09001 * 109.47297 * 269.98097 * 1 2 3 27 27 H 1.09004 * 109.47353 * 29.98231 * 1 2 3 28 28 H 1.09000 * 109.47209 * 149.97656 * 1 2 3 29 29 H 1.08000 * 119.94132 * 359.97438 * 3 2 1 30 30 H 1.07997 * 119.98060 * 180.02562 * 4 3 2 31 31 H 1.08005 * 120.02538 * 180.02562 * 5 4 3 32 32 H 1.08999 * 109.47292 * 300.00273 * 8 7 6 33 33 H 1.08998 * 109.47042 * 60.00021 * 8 7 6 34 34 H 1.08999 * 109.46920 * 300.00247 * 9 8 7 35 35 H 1.09006 * 109.47065 * 60.00159 * 9 8 7 36 36 H 1.08999 * 109.47370 * 299.99940 * 10 9 8 37 37 H 1.08993 * 109.47226 * 60.00294 * 10 9 8 38 38 H 0.96993 * 120.00591 * 359.97438 * 11 10 9 39 39 H 1.09008 * 109.46656 * 299.99731 * 14 12 11 40 40 H 1.09001 * 109.47087 * 59.99211 * 14 12 11 41 41 H 0.96997 * 119.99777 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.47390 * 269.73245 * 25 24 2 43 43 H 1.09008 * 109.46550 * 29.72586 * 25 24 2 44 44 H 1.08995 * 109.47476 * 149.72521 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5802 1.2014 0.0005 5 6 4.2751 0.0071 0.0002 6 6 3.5846 -1.1958 -0.0002 7 8 4.2657 -2.3718 0.0000 8 6 5.6927 -2.2949 0.0000 9 6 6.2796 -3.7079 -0.0004 10 6 7.8073 -3.6255 0.0002 11 7 8.3692 -4.9786 -0.0008 12 6 9.7056 -5.1532 0.0001 13 8 10.4430 -4.1903 0.0012 14 6 10.2837 -6.5449 -0.0004 15 16 12.0911 -6.4475 0.0017 16 6 12.4899 -8.1638 0.0016 17 1 11.7011 -8.9016 0.0008 18 6 13.8178 -8.5677 0.0024 19 7 14.7792 -7.6685 0.0028 20 14 14.2407 -10.3872 0.0030 21 1 14.3536 -10.8696 -1.3970 22 1 15.5334 -10.5947 0.7038 23 1 13.1714 -11.1437 0.7025 24 6 2.1970 -1.1965 -0.0005 25 6 1.4435 -2.5016 -0.0073 26 1 -0.3634 -0.0003 1.0277 27 1 -0.3634 0.8902 -0.5136 28 1 -0.3634 -0.8898 -0.5142 29 1 1.6565 2.1324 -0.0004 30 1 4.1176 2.1382 0.0010 31 1 5.3552 0.0103 0.0010 32 1 6.0279 -1.7624 -0.8900 33 1 6.0278 -1.7622 0.8899 34 1 5.9444 -4.2408 0.8894 35 1 5.9444 -4.2403 -0.8906 36 1 8.1428 -3.0925 -0.8894 37 1 8.1421 -3.0934 0.8906 38 1 7.7795 -5.7487 -0.0013 39 1 9.9479 -7.0781 0.8891 40 1 9.9491 -7.0770 -0.8909 41 1 15.7072 -7.9508 0.0038 42 1 1.2618 -2.8216 1.0187 43 1 0.4911 -2.3686 -0.5205 44 1 2.0326 -3.2586 -0.5251 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278685580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:38 Heat of formation + Delta-G solvation = -92.106825 kcal Electronic energy + Delta-G solvation = -22955.389543 eV Core-core repulsion = 19383.628018 eV Total energy + Delta-G solvation = -3571.761525 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30396 -40.62122 -38.86487 -36.54727 -34.58455 -34.29373 -33.51591 -31.97957 -30.60067 -28.29375 -27.73946 -27.41379 -26.34265 -23.10433 -22.71408 -21.90897 -21.24385 -19.82636 -18.70072 -17.82161 -17.47730 -17.29578 -17.05851 -16.87627 -16.59216 -16.50811 -15.79300 -15.49360 -15.13518 -14.77947 -14.71332 -14.57206 -14.26937 -13.94352 -13.73607 -13.55159 -13.36573 -13.16846 -13.13355 -13.03584 -12.88357 -12.77828 -12.59448 -12.40374 -12.33029 -12.17430 -11.73075 -11.60607 -11.57610 -11.14168 -11.00601 -10.27988 -10.16055 -9.55515 -9.07108 -8.66948 -8.34690 -6.12923 0.35404 0.48291 1.26190 1.42843 1.46470 1.56986 1.59145 1.97244 2.27388 2.47021 2.76859 2.99625 3.31893 3.77861 3.84377 3.85007 3.87551 4.02535 4.06318 4.13957 4.26640 4.28669 4.29749 4.38115 4.43289 4.49454 4.51558 4.62079 4.71637 4.79210 4.86990 4.88200 4.98624 5.00244 5.05832 5.16243 5.38785 5.39033 5.42102 5.42794 5.52957 5.68073 5.90396 6.19900 6.43931 6.47987 7.06731 7.21916 8.74562 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.042902 B = 0.001550 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.498071 B =18064.254582 C =18675.095388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.060 4.060 3 C -0.164 4.164 4 C -0.091 4.091 5 C -0.226 4.226 6 C 0.113 3.887 7 O -0.322 6.322 8 C 0.062 3.938 9 C -0.114 4.114 10 C 0.125 3.875 11 N -0.712 5.712 12 C 0.534 3.466 13 O -0.566 6.566 14 C -0.130 4.130 15 S -0.153 6.153 16 C -0.547 4.547 17 H 0.083 0.917 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.258 1.258 24 C -0.140 4.140 25 C -0.105 4.105 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.135 0.865 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.418 0.582 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.271 0.729 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.300 13.496 -0.017 35.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.060 4.060 3 C -0.182 4.182 4 C -0.108 4.108 5 C -0.244 4.244 6 C 0.068 3.932 7 O -0.236 6.236 8 C -0.014 4.014 9 C -0.152 4.152 10 C 0.001 3.999 11 N -0.367 5.367 12 C 0.320 3.680 13 O -0.444 6.444 14 C -0.281 4.281 15 S 0.074 5.926 16 C -0.695 4.695 17 H 0.102 0.898 18 C -0.191 4.191 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.182 1.182 24 C -0.140 4.140 25 C -0.161 4.161 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.153 0.847 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.256 0.744 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -30.998 14.935 -0.014 34.408 hybrid contribution 0.091 -1.960 0.012 1.962 sum -30.907 12.974 -0.002 33.520 Atomic orbital electron populations 1.20930 0.89009 1.03982 1.03354 1.19958 0.97464 0.91567 0.97053 1.21256 0.94293 0.98325 1.04332 1.21223 0.94678 0.97902 0.97047 1.21473 1.00972 0.92454 1.09524 1.19036 0.91756 0.84924 0.97492 1.85975 1.20498 1.28399 1.88711 1.22697 0.77691 0.98438 1.02568 1.21509 0.92020 0.96252 1.05389 1.21153 0.92735 0.83620 1.02389 1.45670 1.05405 1.10011 1.75613 1.20071 0.82784 0.90125 0.75068 1.90695 1.60370 1.43206 1.50171 1.23378 1.00501 0.97287 1.06956 1.85577 0.98314 1.11610 1.97066 1.23218 0.95665 0.91724 1.58911 0.89840 1.26128 0.95002 1.04272 0.93702 1.70185 1.00473 1.36126 1.47996 0.84947 0.77959 0.76239 0.78789 1.19311 1.20320 1.18187 1.19421 0.90395 0.97161 1.07060 1.20673 0.99907 0.92973 1.02542 0.90063 0.90208 0.90288 0.84015 0.84036 0.84701 0.91087 0.91077 0.89138 0.89123 0.91784 0.91782 0.74445 0.87075 0.87050 0.91994 0.91166 0.89806 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.61 71.23 0.68 -0.29 16 2 C -0.06 -0.87 5.88 -19.88 -0.12 -0.99 16 3 C -0.16 -2.26 9.70 22.28 0.22 -2.04 16 4 C -0.09 -1.34 10.04 22.25 0.22 -1.12 16 5 C -0.23 -3.90 9.04 22.37 0.20 -3.70 16 6 C 0.11 2.18 6.66 22.51 0.15 2.33 16 7 O -0.32 -6.06 9.19 -92.40 -0.85 -6.91 16 8 C 0.06 0.92 4.74 71.98 0.34 1.27 16 9 C -0.11 -1.59 5.70 30.59 0.17 -1.41 16 10 C 0.12 2.52 5.67 86.38 0.49 3.01 16 11 N -0.71 -16.95 5.56 -463.05 -2.57 -19.52 16 12 C 0.53 19.27 7.85 87.66 0.69 19.96 16 13 O -0.57 -25.97 15.86 -3.04 -0.05 -26.02 16 14 C -0.13 -5.06 6.16 71.24 0.44 -4.62 16 15 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 16 C -0.55 -31.18 9.50 67.95 0.65 -30.54 16 17 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 18 C 0.01 0.78 5.49 84.86 0.47 1.25 16 19 N -0.91 -55.97 13.22 21.65 0.29 -55.69 16 20 Si 1.00 43.45 29.55 68.60 2.03 45.47 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 23 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 24 C -0.14 -2.43 5.89 -19.77 -0.12 -2.54 16 25 C -0.10 -1.44 9.38 71.24 0.67 -0.77 16 26 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.08 0.48 8.09 -2.38 -0.02 0.46 16 28 H 0.08 0.56 5.94 -2.39 -0.01 0.54 16 29 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 30 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 31 H 0.14 1.99 6.30 -2.91 -0.02 1.98 16 32 H 0.07 0.99 7.66 -2.39 -0.02 0.98 16 33 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.42 6.96 8.47 -92.71 -0.79 6.17 16 39 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 40 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 41 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 0.83 5.94 -2.38 -0.01 0.81 16 44 H 0.06 0.93 7.54 -2.39 -0.02 0.91 16 Total: -1.00 -78.19 381.54 3.06 -75.13 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.22 Total: 17.37 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 5.15 Total: -20.21 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -2.29 Total: -75.21 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.90 Total: -32.93 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -78.19 3.06 -75.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278685580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.974 kcal (2) G-P(sol) polarization free energy of solvation -78.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds