Wall clock time and date at job start Tue Mar 31 2020 14:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34664 * 117.00260 * 2 1 4 4 O 1.21436 * 119.99854 * 0.02562 * 3 2 1 5 5 C 1.48059 * 119.99988 * 180.02562 * 3 2 1 6 6 C 1.40051 * 120.88815 * 0.02562 * 5 3 2 7 7 C 1.37952 * 119.17041 * 179.97438 * 6 5 3 8 8 C 1.50697 * 119.49664 * 180.02562 * 7 6 5 9 9 N 1.31912 * 121.00686 * 0.02562 * 7 6 5 10 10 C 1.32314 * 121.96067 * 359.97438 * 9 7 6 11 11 N 1.39029 * 119.64837 * 179.72070 * 10 9 7 12 12 C 1.46495 * 119.99529 * 0.02562 * 11 10 9 13 13 C 1.52998 * 109.47287 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47445 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47104 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99953 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00132 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00449 * 179.97438 * 17 15 14 19 19 Si 1.86809 * 120.00074 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.46716 * 89.99380 * 19 17 15 21 21 H 1.48493 * 109.47155 * 209.99583 * 19 17 15 22 22 H 1.48504 * 109.46712 * 330.00037 * 19 17 15 23 23 C 1.39126 * 120.71174 * 359.97438 * 10 9 7 24 24 N 1.48022 * 120.53915 * 179.97438 * 23 10 9 25 25 O 1.21802 * 119.99491 * 89.99879 * 24 23 10 26 26 O 1.21804 * 120.00259 * 270.00198 * 24 23 10 27 27 H 1.09000 * 109.47396 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46850 * 299.99878 * 1 2 3 29 29 H 1.08998 * 109.47349 * 59.99878 * 1 2 3 30 30 H 1.07999 * 120.41374 * 359.95893 * 6 5 3 31 31 H 1.09006 * 109.47015 * 270.02247 * 8 7 6 32 32 H 1.08998 * 109.47571 * 30.01573 * 8 7 6 33 33 H 1.08998 * 109.47214 * 150.02199 * 8 7 6 34 34 H 0.96991 * 120.00319 * 179.97438 * 11 10 9 35 35 H 1.09008 * 109.47615 * 299.99950 * 12 11 10 36 36 H 1.09003 * 109.47486 * 60.00405 * 12 11 10 37 37 H 1.08999 * 109.47455 * 300.00522 * 13 12 11 38 38 H 1.09003 * 109.46849 * 60.00196 * 13 12 11 39 39 H 1.09002 * 109.46821 * 299.99936 * 14 13 12 40 40 H 1.08995 * 109.47152 * 59.99928 * 14 13 12 41 41 H 0.96997 * 120.00176 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1998 0.0000 4 8 1.4021 2.2183 0.0005 5 6 3.5420 1.2773 -0.0006 6 6 4.3228 0.1146 -0.0017 7 6 5.6977 0.2280 -0.0027 8 6 6.5450 -1.0182 -0.0045 9 7 6.2820 1.4107 -0.0022 10 6 5.5858 2.5358 -0.0012 11 7 6.2514 3.7564 0.0052 12 6 7.7159 3.7920 0.0102 13 6 8.1907 5.2464 0.0161 14 6 9.7203 5.2836 0.0207 15 6 10.1879 6.7162 0.0272 16 1 9.4663 7.5198 0.0284 17 6 11.5369 7.0010 0.0326 18 7 11.9451 8.2512 0.0378 19 14 12.7850 5.6111 0.0313 20 1 13.1201 5.2482 -1.3692 21 1 14.0156 6.0502 0.7369 22 1 12.2112 4.4300 0.7249 23 6 4.1947 2.5107 -0.0011 24 7 3.4197 3.7718 0.0006 25 8 3.1008 4.2920 -1.0536 26 8 3.1008 4.2893 1.0561 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 3.8545 -0.8585 -0.0014 31 1 6.7498 -1.3198 1.0228 32 1 6.0130 -1.8186 -0.5187 33 1 7.4850 -0.8178 -0.5185 34 1 5.7461 4.5843 0.0056 35 1 8.0887 3.2841 0.8998 36 1 8.0946 3.2902 -0.8803 37 1 7.8180 5.7540 -0.8735 38 1 7.8121 5.7486 0.9064 39 1 10.0934 4.7759 0.9102 40 1 10.0986 4.7815 -0.8697 41 1 12.8941 8.4516 0.0412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287927428.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:10 Heat of formation + Delta-G solvation = -68.886084 kcal Electronic energy + Delta-G solvation = -26926.632430 eV Core-core repulsion = 22809.584618 eV Total energy + Delta-G solvation = -4117.047813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.55400 -42.09531 -41.36414 -38.21813 -37.97334 -37.70356 -35.82384 -34.92496 -34.08179 -32.27095 -30.43497 -28.97783 -28.76888 -26.42156 -26.10001 -24.45381 -23.76708 -22.36253 -22.02600 -20.60841 -20.00393 -19.55095 -19.17756 -18.83958 -18.45329 -17.82357 -17.64083 -17.20788 -16.81810 -16.40560 -15.88226 -15.67547 -15.55071 -15.05352 -14.77736 -14.65443 -14.28718 -14.09264 -13.81507 -13.52052 -13.27087 -13.05870 -12.92867 -12.85962 -12.78190 -12.56190 -12.38034 -12.37088 -12.09674 -12.03206 -11.86110 -11.76854 -11.60727 -11.39095 -11.25296 -11.16250 -10.78265 -9.40450 -8.30665 -6.36662 -1.24917 -0.76531 -0.42273 0.12991 0.97900 0.99192 1.37204 1.39542 1.51423 1.57944 2.10996 2.36047 2.80943 2.93463 3.04613 3.09105 3.35805 3.67219 3.87903 4.01151 4.08053 4.16004 4.22442 4.32348 4.38771 4.62642 4.66019 4.78291 4.78848 4.81872 4.85572 4.87042 4.92586 5.02005 5.30381 5.36651 5.47944 5.51312 5.61708 5.68299 6.10618 6.24281 6.26459 6.48045 6.71491 7.28127 8.86215 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.002747 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.931075 B =10189.206969 C =11425.509987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.329 6.329 3 C 0.505 3.495 4 O -0.520 6.520 5 C -0.002 4.002 6 C -0.144 4.144 7 C 0.222 3.778 8 C -0.110 4.110 9 N -0.511 5.511 10 C 0.454 3.546 11 N -0.712 5.712 12 C 0.141 3.859 13 C -0.109 4.109 14 C -0.004 4.004 15 C -0.538 4.538 16 H 0.027 0.973 17 C 0.000 4.000 18 N -0.953 5.953 19 Si 0.956 3.044 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.239 1.239 23 C -0.151 4.151 24 N 0.041 4.959 25 O -0.155 6.155 26 O -0.155 6.155 27 H 0.151 0.849 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.211 0.789 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.086 0.914 34 H 0.407 0.593 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.029 0.971 40 H 0.028 0.972 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.063 -30.183 -0.053 35.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.244 6.244 3 C 0.349 3.651 4 O -0.409 6.409 5 C -0.011 4.011 6 C -0.166 4.166 7 C 0.080 3.920 8 C -0.166 4.166 9 N -0.231 5.231 10 C 0.215 3.785 11 N -0.339 5.339 12 C 0.019 3.981 13 C -0.148 4.148 14 C -0.042 4.042 15 C -0.576 4.576 16 H 0.046 0.954 17 C -0.197 4.197 18 N -0.593 5.593 19 Si 0.779 3.221 20 H -0.190 1.190 21 H -0.212 1.212 22 H -0.162 1.162 23 C -0.241 4.241 24 N 0.568 4.432 25 O -0.377 6.377 26 O -0.376 6.376 27 H 0.169 0.831 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.228 0.772 31 H 0.130 0.870 32 H 0.142 0.858 33 H 0.105 0.895 34 H 0.243 0.757 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.640 -30.326 -0.051 35.083 hybrid contribution -1.009 1.736 -0.014 2.008 sum -18.649 -28.590 -0.066 34.135 Atomic orbital electron populations 1.23808 0.72814 1.06960 1.02935 1.86491 1.26128 1.28909 1.82890 1.20972 0.88264 0.82836 0.73027 1.90982 1.67112 1.37316 1.45529 1.19035 0.90924 0.91676 0.99506 1.22542 0.93170 0.98716 1.02184 1.22295 0.92268 0.93091 0.84377 1.21155 0.99535 0.89967 1.05969 1.67468 1.38218 0.96985 1.20444 1.17740 0.83458 0.88762 0.88559 1.45167 1.08660 1.03671 1.76421 1.21517 0.75967 0.97480 1.03172 1.21559 0.97432 0.94318 1.01447 1.19394 0.92426 0.94927 0.97429 1.21463 0.92447 0.92813 1.50882 0.95438 1.26119 1.01134 0.98498 0.93924 1.70085 1.16140 1.20695 1.52408 0.85570 0.77506 0.79722 0.79320 1.19015 1.21181 1.16198 1.21241 0.91065 0.84195 1.27633 1.43309 0.98390 1.01602 0.99899 1.94529 1.57030 1.65049 1.21044 1.94530 1.57033 1.65219 1.20857 0.83080 0.91725 0.91713 0.77189 0.86962 0.85838 0.89525 0.75729 0.90278 0.90236 0.92723 0.92729 0.95257 0.95377 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.33 -4.72 9.92 -55.73 -0.55 -5.27 16 3 C 0.51 11.42 7.92 70.43 0.56 11.98 16 4 O -0.52 -15.95 14.51 24.96 0.36 -15.59 16 5 C 0.00 -0.04 5.90 -19.92 -0.12 -0.15 16 6 C -0.14 -1.75 9.32 22.64 0.21 -1.54 16 7 C 0.22 2.99 6.77 42.48 0.29 3.27 16 8 C -0.11 -0.47 10.16 71.23 0.72 0.26 16 9 N -0.51 -11.24 9.44 -181.47 -1.71 -12.96 16 10 C 0.45 12.32 7.48 133.08 1.00 13.31 16 11 N -0.71 -21.06 5.70 -345.12 -1.97 -23.02 16 12 C 0.14 4.23 5.69 86.38 0.49 4.73 16 13 C -0.11 -4.13 5.27 30.59 0.16 -3.97 16 14 C 0.00 -0.17 4.04 29.85 0.12 -0.05 16 15 C -0.54 -31.05 9.66 25.60 0.25 -30.80 16 16 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 17 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 18 N -0.95 -60.26 13.96 21.45 0.30 -59.96 16 19 Si 0.96 43.32 27.47 68.60 1.88 45.20 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 22 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 23 C -0.15 -4.27 6.22 36.90 0.23 -4.04 16 24 N 0.04 1.39 1.73 -45.20 -0.08 1.32 16 25 O -0.16 -5.66 19.02 21.54 0.41 -5.25 16 26 O -0.15 -5.66 19.01 21.57 0.41 -5.25 16 27 H 0.15 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.21 0.65 7.71 -2.91 -0.02 0.63 16 31 H 0.11 0.20 8.14 -2.38 -0.02 0.18 16 32 H 0.12 -0.27 8.07 -2.39 -0.02 -0.29 16 33 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.41 12.65 7.70 -92.72 -0.71 11.94 16 35 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.03 1.26 7.20 -2.39 -0.02 1.25 16 40 H 0.03 1.20 7.57 -2.39 -0.02 1.18 16 41 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -80.59 363.80 4.93 -75.66 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.30 Total: 10.23 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 5.57 Total: -5.11 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -3.46 Total: -94.63 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: 0.63 Total: -31.36 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.20 kcal Total: -80.59 4.93 -75.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287927428.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.775 kcal (2) G-P(sol) polarization free energy of solvation -80.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds