Wall clock time and date at job start Tue Mar 31 2020 14:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38228 * 120.00201 * 2 1 4 4 C 1.38238 * 120.00120 * 180.23979 * 3 2 1 5 5 C 1.38234 * 119.99675 * 359.47825 * 4 3 2 6 6 C 1.50703 * 120.00257 * 180.27927 * 5 4 3 7 7 S 1.81401 * 109.46938 * 90.00075 * 6 5 4 8 8 O 1.42106 * 110.54576 * 291.63048 * 7 6 5 9 9 O 1.42108 * 110.54171 * 68.37809 * 7 6 5 10 10 N 1.65596 * 104.45050 * 180.02562 * 7 6 5 11 11 C 1.46501 * 120.00283 * 270.00063 * 10 7 6 12 12 C 1.50708 * 109.46753 * 95.00149 * 11 10 7 13 13 H 1.08001 * 120.00060 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99577 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00175 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99494 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46800 * 90.00232 * 16 14 12 18 18 H 1.48506 * 109.46928 * 209.99767 * 16 14 12 19 19 H 1.48494 * 109.47378 * 329.99934 * 16 14 12 20 20 C 1.46508 * 119.99689 * 90.00429 * 10 7 6 21 21 C 1.52997 * 109.47347 * 95.00115 * 20 10 7 22 22 C 1.52997 * 117.49872 * 243.62166 * 21 20 10 23 23 C 1.52997 * 117.49857 * 174.99959 * 21 20 10 24 24 C 1.38234 * 120.00240 * 0.26327 * 5 4 3 25 25 C 1.38234 * 119.99739 * 179.71804 * 2 1 3 26 26 H 1.09008 * 109.47424 * 270.28049 * 1 2 3 27 27 H 1.09002 * 109.47258 * 30.27549 * 1 2 3 28 28 H 1.08998 * 109.47359 * 150.27651 * 1 2 3 29 29 H 1.08004 * 120.00256 * 359.97438 * 3 2 1 30 30 H 1.08002 * 120.00519 * 179.76445 * 4 3 2 31 31 H 1.08988 * 109.47584 * 210.00457 * 6 5 4 32 32 H 1.09000 * 109.47013 * 330.00974 * 6 5 4 33 33 H 1.09000 * 109.47120 * 214.99489 * 11 10 7 34 34 H 1.08997 * 109.47218 * 335.00393 * 11 10 7 35 35 H 0.96998 * 120.00086 * 180.02562 * 15 14 12 36 36 H 1.09007 * 109.46575 * 214.99919 * 20 10 7 37 37 H 1.09002 * 109.46977 * 334.99608 * 20 10 7 38 38 H 1.09000 * 115.54854 * 29.32823 * 21 20 10 39 39 H 1.08995 * 117.49768 * 0.02562 * 22 21 20 40 40 H 1.09006 * 117.50042 * 145.01709 * 22 21 20 41 41 H 1.09002 * 117.49654 * 214.97939 * 23 21 20 42 42 H 1.08990 * 117.50049 * 359.97438 * 23 21 20 43 43 H 1.07997 * 120.00460 * 180.02562 * 24 5 4 44 44 H 1.08001 * 120.00310 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0050 5 6 4.2717 -0.0001 0.0009 6 6 5.7787 -0.0002 0.0018 7 16 6.3823 0.0075 1.7124 8 8 6.0858 1.2474 2.3403 9 8 6.0857 -1.2266 2.3514 10 7 8.0320 0.0074 1.5685 11 6 8.7622 -1.2613 1.5105 12 6 8.9964 -1.6406 0.0708 13 1 8.6376 -1.0004 -0.7215 14 6 9.6687 -2.8049 -0.2346 15 7 10.1061 -3.5842 0.7302 16 14 9.9584 -3.2754 -2.0191 17 1 11.2491 -2.7026 -2.4787 18 1 10.0024 -4.7549 -2.1400 19 1 8.8541 -2.7429 -2.8570 20 6 8.7613 1.2762 1.4994 21 6 9.2485 1.6613 2.8976 22 6 8.6880 2.9453 3.5123 23 6 10.1359 2.9017 3.0198 24 6 3.5805 -1.1972 0.0063 25 6 2.1981 -1.1972 0.0059 26 1 -0.3634 0.0050 1.0277 27 1 -0.3634 0.8875 -0.5181 28 1 -0.3634 -0.8924 -0.5095 29 1 1.6582 2.1325 -0.0004 30 1 4.1206 2.1323 -0.0089 31 1 6.1423 -0.8924 -0.5078 32 1 6.1424 0.8874 -0.5158 33 1 9.7206 -1.1524 2.0180 34 1 8.1776 -2.0397 2.0008 35 1 10.5794 -4.4031 0.5153 36 1 9.6174 1.1673 0.8334 37 1 8.1006 2.0546 1.1176 38 1 9.4525 0.8283 3.5703 39 1 7.9718 3.5155 2.9207 40 1 8.5229 2.9573 4.5897 41 1 10.9234 2.8848 3.7731 42 1 10.3728 3.4431 2.1040 43 1 4.1204 -2.1325 0.0113 44 1 1.6581 -2.1325 0.0101 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288340581.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:09 Heat of formation + Delta-G solvation = -49.529875 kcal Electronic energy + Delta-G solvation = -25601.650872 eV Core-core repulsion = 22031.735622 eV Total energy + Delta-G solvation = -3569.915250 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.43376 -38.86994 -38.10799 -36.92624 -36.41036 -34.99274 -34.37197 -31.93827 -30.49904 -29.64249 -27.07120 -26.14980 -24.34240 -23.74848 -23.10679 -21.92213 -21.55774 -19.79557 -18.69265 -18.49916 -17.66794 -17.42643 -16.76148 -16.66355 -16.24312 -16.10786 -15.95706 -15.41735 -15.04090 -14.65574 -14.41570 -14.39961 -14.07771 -13.85667 -13.82112 -13.47194 -13.21976 -13.14236 -13.11659 -12.91043 -12.88641 -12.86464 -12.49819 -12.36715 -12.29375 -12.25838 -11.99951 -11.92017 -11.86064 -11.71011 -11.20101 -10.71447 -10.58532 -9.95194 -9.83594 -9.40889 -8.17968 -6.33628 -0.76084 0.33897 0.38428 1.42983 1.43712 1.53562 1.79159 2.41008 2.68603 2.91588 2.99333 3.13421 3.20535 3.42940 3.76233 3.89703 3.99294 4.02740 4.05390 4.07762 4.12254 4.35430 4.42101 4.46590 4.50839 4.56684 4.81132 4.83508 4.86005 4.88731 4.90755 5.04886 5.09394 5.10230 5.25095 5.29703 5.33931 5.34802 5.37963 5.48662 5.50777 5.60944 5.74902 5.93400 6.00567 6.07889 6.79532 7.37509 8.90205 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009769 B = 0.005056 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.437358 B = 5537.124430 C = 7695.782902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.085 4.085 3 C -0.124 4.124 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.569 4.569 7 S 2.606 3.394 8 O -0.971 6.971 9 O -0.999 6.999 10 N -0.988 5.988 11 C 0.260 3.740 12 C -0.552 4.552 13 H 0.077 0.923 14 C 0.011 3.989 15 N -0.928 5.928 16 Si 0.960 3.040 17 H -0.271 1.271 18 H -0.287 1.287 19 H -0.260 1.260 20 C 0.158 3.842 21 C -0.197 4.197 22 C -0.171 4.171 23 C -0.156 4.156 24 C -0.126 4.126 25 C -0.128 4.128 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.157 0.843 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.163 0.837 33 H 0.019 0.981 34 H 0.018 0.982 35 H 0.266 0.734 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.121 0.879 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.240 12.605 -3.529 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.085 4.085 3 C -0.141 4.141 4 C -0.133 4.133 5 C -0.119 4.119 6 C -0.698 4.698 7 S 2.704 3.296 8 O -0.961 6.961 9 O -0.990 6.990 10 N -0.824 5.824 11 C 0.136 3.864 12 C -0.591 4.591 13 H 0.095 0.905 14 C -0.188 4.188 15 N -0.567 5.567 16 Si 0.784 3.216 17 H -0.196 1.196 18 H -0.213 1.213 19 H -0.184 1.184 20 C 0.033 3.967 21 C -0.217 4.217 22 C -0.207 4.207 23 C -0.194 4.194 24 C -0.146 4.146 25 C -0.146 4.146 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.175 0.825 30 H 0.163 0.837 31 H 0.161 0.839 32 H 0.181 0.819 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.130 0.870 43 H 0.140 0.860 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.567 12.436 -2.654 18.594 hybrid contribution 0.994 -1.116 -1.110 1.862 sum -12.573 11.320 -3.764 17.331 Atomic orbital electron populations 1.20880 0.88366 1.04210 1.03433 1.20464 0.98177 0.92648 0.97259 1.21431 0.93335 0.99223 1.00146 1.21445 0.95624 0.97346 0.98873 1.19199 0.91609 0.95292 1.05765 1.29540 1.01584 1.13851 1.24860 1.04946 0.73299 0.73043 0.78342 1.93499 1.84085 1.44836 1.73699 1.93494 1.84224 1.47183 1.74119 1.57290 1.23463 1.12649 1.89009 1.18725 0.91768 0.79411 0.96482 1.21936 1.37172 1.06879 0.93074 0.90471 1.25851 0.95140 0.96147 1.01710 1.70077 1.38628 1.13878 1.34145 0.85531 0.79148 0.77237 0.79665 1.19623 1.21272 1.18385 1.20860 0.97412 0.83410 0.95062 1.22748 1.07089 0.92728 0.99139 1.23037 0.97043 0.99614 1.01052 1.23037 0.93447 0.98974 1.03897 1.21418 0.95924 0.97679 0.99549 1.21358 0.93078 0.99485 1.00646 0.90082 0.89771 0.90400 0.82534 0.83745 0.83944 0.81871 0.96340 0.96442 0.92509 0.89723 0.89005 0.90159 0.87974 0.89122 0.88003 0.86954 0.86050 0.83598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 10.01 71.24 0.71 -0.76 16 2 C -0.08 -1.78 5.88 -19.87 -0.12 -1.90 16 3 C -0.12 -2.64 9.70 22.27 0.22 -2.42 16 4 C -0.11 -2.94 9.70 22.27 0.22 -2.72 16 5 C -0.12 -3.60 5.14 -19.87 -0.10 -3.71 16 6 C -0.57 -18.42 6.31 71.24 0.45 -17.97 16 7 S 2.61 105.02 5.35 -56.49 -0.30 104.71 16 8 O -0.97 -38.52 16.98 -127.65 -2.17 -40.69 16 9 O -1.00 -49.38 16.53 -127.65 -2.11 -51.49 16 10 N -0.99 -41.39 2.70 -519.81 -1.40 -42.79 16 11 C 0.26 13.41 5.41 85.64 0.46 13.87 16 12 C -0.55 -28.78 9.38 25.60 0.24 -28.54 16 13 H 0.08 3.69 7.81 -2.91 -0.02 3.67 16 14 C 0.01 0.61 5.46 84.66 0.46 1.07 16 15 N -0.93 -54.26 13.29 21.45 0.28 -53.97 16 16 Si 0.96 41.77 29.54 68.60 2.03 43.80 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 20 C 0.16 5.44 5.54 86.38 0.48 5.92 16 21 C -0.20 -6.53 6.01 -10.80 -0.06 -6.60 16 22 C -0.17 -4.75 10.18 30.59 0.31 -4.44 16 23 C -0.16 -3.88 10.25 30.59 0.31 -3.56 16 24 C -0.13 -3.89 9.70 22.27 0.22 -3.67 16 25 C -0.13 -3.15 9.70 22.27 0.22 -2.94 16 26 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 28 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 29 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.14 3.12 8.06 -2.91 -0.02 3.09 16 31 H 0.14 4.88 8.08 -2.40 -0.02 4.86 16 32 H 0.16 4.15 8.09 -2.39 -0.02 4.13 16 33 H 0.02 1.02 8.11 -2.39 -0.02 1.00 16 34 H 0.02 1.02 6.82 -2.39 -0.02 1.01 16 35 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 36 H 0.08 2.88 8.11 -2.38 -0.02 2.86 16 37 H 0.09 2.62 7.34 -2.39 -0.02 2.61 16 38 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 39 H 0.10 2.71 8.03 -2.39 -0.02 2.69 16 40 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 41 H 0.10 2.28 8.14 -2.39 -0.02 2.27 16 42 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 44 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -71.17 383.90 1.31 -69.86 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.97 Total: 28.91 kcal Atomic # 6 Polarization: -62.36 SS G_CDS: 4.01 Total: -58.35 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -1.12 Total: -96.76 kcal Atomic # 8 Polarization: -87.90 SS G_CDS: -4.28 Total: -92.18 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: 105.02 SS G_CDS: -0.30 Total: 104.71 kcal Total: -71.17 1.31 -69.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288340581.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.332 kcal (2) G-P(sol) polarization free energy of solvation -71.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds