Wall clock time and date at job start Tue Mar 31 2020 14:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.29388 * 2 1 4 4 C 1.52854 * 109.30019 * 119.57789 * 2 1 3 5 5 C 1.53430 * 108.83722 * 171.62891 * 4 2 1 6 6 N 1.46929 * 107.78897 * 296.76429 * 5 4 2 7 7 S 1.65590 * 120.54403 * 224.61854 * 6 5 4 8 8 O 1.42104 * 104.27780 * 18.32126 * 7 6 5 9 9 O 1.42101 * 104.27799 * 146.17298 * 7 6 5 10 10 C 1.81393 * 104.45336 * 262.24767 * 7 6 5 11 11 C 1.53002 * 109.47415 * 180.02562 * 10 7 6 12 12 C 1.50700 * 109.47122 * 179.97438 * 11 10 7 13 13 H 1.08002 * 120.00182 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00073 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99869 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00228 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46932 * 90.00254 * 16 14 12 18 18 H 1.48498 * 109.47346 * 210.00311 * 16 14 12 19 19 H 1.48500 * 109.46909 * 330.00148 * 16 14 12 20 20 C 1.39919 * 118.91471 * 44.64183 * 6 5 4 21 21 C 1.39074 * 119.13555 * 166.68316 * 20 6 5 22 22 C 1.38033 * 120.03404 * 179.83911 * 21 20 6 23 23 C 1.38312 * 119.90899 * 0.02562 * 22 21 20 24 24 C 1.38118 * 120.16098 * 0.02562 * 23 22 21 25 25 C 1.38505 * 120.31195 * 0.02879 * 24 23 22 26 26 H 1.08999 * 109.46930 * 300.41706 * 1 2 3 27 27 H 1.09006 * 109.47168 * 180.42202 * 1 2 3 28 28 H 1.09001 * 109.47318 * 60.42007 * 1 2 3 29 29 H 1.08999 * 109.47472 * 60.00295 * 3 2 1 30 30 H 1.09006 * 109.46769 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47184 * 299.99518 * 3 2 1 32 32 H 1.09001 * 109.57835 * 291.43412 * 4 2 1 33 33 H 1.08997 * 109.57700 * 51.82165 * 4 2 1 34 34 H 1.09001 * 109.80086 * 56.33995 * 5 4 2 35 35 H 1.09002 * 109.79981 * 177.13752 * 5 4 2 36 36 H 1.09009 * 109.46907 * 300.00000 * 10 7 6 37 37 H 1.09003 * 109.47448 * 59.99754 * 10 7 6 38 38 H 1.08992 * 109.46976 * 299.99681 * 11 10 7 39 39 H 1.08997 * 109.47131 * 59.99845 * 11 10 7 40 40 H 0.97001 * 119.99972 * 179.97438 * 15 14 12 41 41 H 1.07994 * 119.98690 * 359.84222 * 21 20 6 42 42 H 1.07997 * 120.04413 * 180.02562 * 22 21 20 43 43 H 1.07999 * 119.91493 * 180.02562 * 23 22 21 44 44 H 1.07998 * 119.84614 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0356 1.4441 0.0000 4 6 2.0352 -0.7121 1.2546 5 6 3.5549 -0.8924 1.1440 6 7 3.8207 -1.7647 -0.0081 7 16 4.9181 -2.9994 0.1068 8 8 5.0724 -3.2022 1.5048 9 8 4.3862 -4.0197 -0.7270 10 6 6.4400 -2.3207 -0.6097 11 6 7.5430 -3.3799 -0.5615 12 6 8.8072 -2.8161 -1.1574 13 1 8.8226 -1.8034 -1.5325 14 6 9.9446 -3.5927 -1.2227 15 7 9.9261 -4.8257 -0.7654 16 14 11.5118 -2.8937 -1.9606 17 1 12.3155 -2.2459 -0.8931 18 1 12.3005 -3.9903 -2.5776 19 1 11.1653 -1.8891 -2.9979 20 6 3.1318 -1.5347 -1.2040 21 6 3.5676 -2.1597 -2.3674 22 6 2.8998 -1.9486 -3.5569 23 6 1.7970 -1.1144 -3.5900 24 6 1.3630 -0.4918 -2.4360 25 6 2.0279 -0.6971 -1.2385 26 1 -0.3633 0.5203 0.8862 27 1 -0.3634 -1.0277 0.0076 28 1 -0.3634 0.5073 -0.8937 29 1 1.6707 1.9568 0.8900 30 1 3.1256 1.4474 0.0005 31 1 1.6707 1.9567 -0.8900 32 1 1.8018 -0.1121 2.1342 33 1 1.5568 -1.6879 1.3384 34 1 4.0314 0.0760 0.9915 35 1 3.9392 -1.3536 2.0537 36 1 6.2574 -2.0336 -1.6453 37 1 6.7512 -1.4453 -0.0395 38 1 7.7257 -3.6673 0.4738 39 1 7.2317 -4.2549 -1.1320 40 1 10.7261 -5.3722 -0.8117 41 1 4.4290 -2.8106 -2.3403 42 1 3.2378 -2.4342 -4.4603 43 1 1.2742 -0.9495 -4.5205 44 1 0.5011 0.1583 -2.4676 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288350574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:49 Heat of formation + Delta-G solvation = -55.434301 kcal Electronic energy + Delta-G solvation = -26269.063086 eV Core-core repulsion = 22698.891800 eV Total energy + Delta-G solvation = -3570.171285 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.67344 -37.32089 -36.50974 -35.80388 -35.42109 -33.96496 -31.26216 -30.59194 -30.07378 -28.25336 -27.46498 -25.67093 -23.78388 -23.12245 -22.30777 -21.35597 -19.36322 -18.55237 -17.79116 -17.00318 -16.59196 -16.05605 -15.59499 -15.36974 -15.07833 -14.58427 -14.45011 -14.13093 -14.03686 -13.76126 -13.48797 -13.43203 -12.83499 -12.74244 -12.49363 -12.26492 -12.09856 -11.97295 -11.84232 -11.78663 -11.65205 -11.61371 -11.29308 -11.13470 -11.10119 -11.00619 -10.67962 -10.50392 -10.44670 -10.34774 -10.24777 -9.74792 -9.23437 -8.71916 -8.53879 -7.89694 -6.15968 -4.21962 0.52143 1.40679 1.48580 2.76056 3.24359 3.30757 3.33596 3.76648 4.14632 4.32434 4.35016 4.39759 4.46997 4.68996 4.71518 4.93935 5.05546 5.12798 5.19100 5.23409 5.26743 5.36623 5.40083 5.44248 5.48508 5.52915 5.63270 5.66209 5.70648 5.73171 5.81778 5.85574 5.95537 6.01420 6.11027 6.18905 6.32355 6.39316 6.60097 6.64021 6.68343 7.10934 7.23130 7.28426 7.76901 8.12199 8.81270 9.43159 10.95015 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018387 B = 0.003786 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.482434 B = 7393.454694 C = 7855.931638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.020 4.020 3 C -0.139 4.139 4 C -0.122 4.122 5 C 0.102 3.898 6 N -0.943 5.943 7 S 2.577 3.423 8 O -0.955 6.955 9 O -0.949 6.949 10 C -0.585 4.585 11 C 0.029 3.971 12 C -0.521 4.521 13 H 0.062 0.938 14 C 0.059 3.941 15 N -0.890 5.890 16 Si 0.901 3.099 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.193 3.807 21 C -0.169 4.169 22 C -0.082 4.082 23 C -0.153 4.153 24 C -0.091 4.091 25 C -0.110 4.110 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.034 0.966 39 H 0.035 0.965 40 H 0.266 0.734 41 H 0.138 0.862 42 H 0.128 0.872 43 H 0.120 0.880 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.774 12.335 -0.245 22.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.020 4.020 3 C -0.197 4.197 4 C -0.160 4.160 5 C -0.022 4.022 6 N -0.765 5.765 7 S 2.678 3.322 8 O -0.945 6.945 9 O -0.939 6.939 10 C -0.719 4.719 11 C -0.010 4.010 12 C -0.560 4.560 13 H 0.081 0.919 14 C -0.144 4.144 15 N -0.528 5.528 16 Si 0.728 3.272 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C 0.096 3.904 21 C -0.191 4.191 22 C -0.100 4.100 23 C -0.172 4.172 24 C -0.109 4.109 25 C -0.114 4.114 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.125 0.875 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.156 0.844 42 H 0.145 0.855 43 H 0.138 0.862 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.838 11.292 0.292 21.965 hybrid contribution 1.249 0.734 -0.690 1.605 sum -17.589 12.027 -0.398 21.311 Atomic orbital electron populations 1.21924 0.93599 1.02177 1.01843 1.19317 0.95681 0.94990 0.92046 1.21972 1.01579 0.94275 1.01839 1.21916 0.95008 1.01596 0.97510 1.21843 0.97236 0.94759 0.88400 1.56140 1.54609 1.49231 1.16477 1.06325 0.76675 0.74061 0.75179 1.93534 1.86508 1.83806 1.30684 1.93577 1.77047 1.54143 1.69178 1.30509 1.16678 1.12581 1.12125 1.18992 0.91329 0.91489 0.99205 1.20976 0.94392 0.99665 1.40987 0.91948 1.25063 0.99210 0.94846 0.95279 1.69953 1.29392 1.07796 1.45641 0.86456 0.82696 0.78718 0.79363 1.20428 1.20953 1.19697 1.17294 0.92278 0.96333 0.84488 1.21362 1.03430 1.02532 0.91732 1.20918 0.94902 0.97024 0.97184 1.20987 0.98334 0.99688 0.98205 1.20903 0.99141 0.99275 0.91615 1.19264 0.95733 1.00981 0.95471 0.92333 0.92363 0.92168 0.92275 0.92213 0.92377 0.89854 0.90820 0.90409 0.87477 0.85813 0.85861 0.94766 0.94707 0.92464 0.84424 0.85450 0.86184 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 7.96 37.16 0.30 -0.81 16 2 C -0.02 -0.20 0.66 -155.79 -0.10 -0.30 16 3 C -0.14 -1.17 8.20 37.16 0.30 -0.87 16 4 C -0.12 -1.25 4.83 -26.58 -0.13 -1.38 16 5 C 0.10 1.24 6.34 -3.59 -0.02 1.22 16 6 N -0.94 -14.31 3.20 -58.08 -0.19 -14.49 16 7 S 2.58 48.19 4.81 -107.50 -0.52 47.68 16 8 O -0.95 -19.73 16.39 -57.54 -0.94 -20.67 16 9 O -0.95 -20.03 15.04 -57.54 -0.87 -20.90 16 10 C -0.58 -11.37 5.92 37.16 0.22 -11.15 16 11 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 12 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 16 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 C 0.19 2.88 6.22 -83.72 -0.52 2.36 16 21 C -0.17 -2.64 8.32 -39.35 -0.33 -2.97 16 22 C -0.08 -1.07 10.05 -39.63 -0.40 -1.47 16 23 C -0.15 -1.71 10.04 -39.60 -0.40 -2.11 16 24 C -0.09 -0.99 9.08 -39.53 -0.36 -1.35 16 25 C -0.11 -1.36 4.71 -104.44 -0.49 -1.86 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.42 6.40 -51.93 -0.33 0.09 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.55 6.58 -51.93 -0.34 0.21 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.65 8.12 -51.93 -0.42 0.22 16 33 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 34 H 0.08 0.80 6.51 -51.93 -0.34 0.46 16 35 H 0.11 1.33 6.70 -51.93 -0.35 0.98 16 36 H 0.12 2.20 7.10 -51.92 -0.37 1.83 16 37 H 0.12 2.14 8.14 -51.92 -0.42 1.72 16 38 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.14 2.33 4.60 -52.49 -0.24 2.09 16 42 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.12 1.03 6.32 -52.49 -0.33 0.70 16 LS Contribution 355.05 15.07 5.35 5.35 Total: -1.00 -33.58 355.05 -10.41 -44.00 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.49 Total: 1.64 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: -2.48 Total: -33.13 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.55 Total: -40.01 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -1.81 Total: -41.57 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 48.19 SS G_CDS: -0.52 Total: 47.68 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.58 -10.41 -44.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288350574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.436 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds