Wall clock time and date at job start Tue Mar 31 2020 13:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00308 * 2 1 4 4 H 1.48499 * 109.46843 * 270.00057 * 3 2 1 5 5 H 1.48491 * 109.46831 * 30.00011 * 3 2 1 6 6 H 1.48498 * 109.46860 * 150.00284 * 3 2 1 7 7 C 1.37878 * 119.99567 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00349 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99894 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47089 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46945 * 180.02562 * 10 9 7 12 12 O 1.20819 * 120.00425 * 359.97438 * 11 10 9 13 13 O 1.34232 * 119.99797 * 179.97438 * 11 10 9 14 14 C 1.45192 * 117.00082 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47252 * 179.97438 * 14 13 11 16 16 N 1.29027 * 124.91378 * 90.00206 * 15 14 13 17 17 C 1.31788 * 117.12109 * 179.97438 * 16 15 14 18 18 C 1.50706 * 122.74497 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.46703 * 215.02345 * 18 17 16 20 20 C 1.53006 * 109.47207 * 180.02562 * 19 18 17 21 21 C 1.53004 * 109.46829 * 60.00210 * 20 19 18 22 22 C 1.53004 * 109.47176 * 300.00305 * 21 20 19 23 23 C 1.53001 * 109.46717 * 95.02711 * 18 17 16 24 24 C 1.33635 * 114.50125 * 0.23259 * 17 16 15 25 25 S 1.70976 * 124.91910 * 269.99842 * 15 14 13 26 26 H 0.97008 * 119.99837 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47383 * 59.99927 * 9 7 2 28 28 H 1.09003 * 109.46800 * 299.99535 * 9 7 2 29 29 H 1.08998 * 109.47193 * 59.99657 * 10 9 7 30 30 H 1.09003 * 109.46795 * 299.99385 * 10 9 7 31 31 H 1.09001 * 109.47085 * 60.00070 * 14 13 11 32 32 H 1.08999 * 109.47688 * 299.99957 * 14 13 11 33 33 H 1.08998 * 109.47477 * 335.02549 * 18 17 16 34 34 H 1.08995 * 109.47571 * 299.99842 * 19 18 17 35 35 H 1.08999 * 109.47100 * 60.00442 * 19 18 17 36 36 H 1.08998 * 109.47213 * 300.00352 * 20 19 18 37 37 H 1.08992 * 109.47700 * 179.97438 * 20 19 18 38 38 H 1.08992 * 109.47094 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.47107 * 60.00077 * 21 20 19 40 40 H 1.09007 * 109.47188 * 299.99908 * 22 21 20 41 41 H 1.08999 * 109.47222 * 179.97438 * 22 21 20 42 42 H 1.08994 * 109.47580 * 299.99400 * 23 18 17 43 43 H 1.08995 * 109.47528 * 60.00175 * 23 18 17 44 44 H 1.08001 * 126.03202 * 179.76469 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6525 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0213 -2.6367 -0.0014 11 6 5.5283 -2.6368 -0.0001 12 8 6.1325 -1.5905 0.0012 13 8 6.1994 -3.7993 -0.0006 14 6 7.6494 -3.7235 0.0001 15 6 8.2253 -5.1161 0.0001 16 7 8.5080 -5.7983 -1.0579 17 6 9.0074 -7.0047 -0.8791 18 6 9.3818 -7.9099 -2.0244 19 6 9.0870 -9.3622 -1.6440 20 6 9.4677 -10.2813 -2.8064 21 6 10.9591 -10.1267 -3.1115 22 6 11.2539 -8.6743 -3.4919 23 6 10.8730 -7.7553 -2.3301 24 6 9.1495 -7.3617 0.4008 25 16 8.5987 -6.0207 1.4021 26 1 -0.4850 0.8401 -0.0004 27 1 3.8744 -0.6810 0.8905 28 1 3.8750 -0.6798 -0.8895 29 1 3.6582 -3.1496 -0.8920 30 1 3.6576 -3.1515 0.8880 31 1 7.9850 -3.1919 0.8906 32 1 7.9858 -3.1908 -0.8894 33 1 8.8004 -7.6400 -2.9060 34 1 9.6685 -9.6321 -0.7625 35 1 8.0247 -9.4722 -1.4262 36 1 8.8866 -10.0116 -3.6883 37 1 9.2582 -11.3160 -2.5353 38 1 11.2302 -10.7811 -3.9399 39 1 11.5402 -10.3964 -2.2297 40 1 10.6727 -8.4045 -4.3738 41 1 12.3164 -8.5640 -3.7088 42 1 11.0831 -6.7207 -2.6011 43 1 11.4545 -8.0253 -1.4486 44 1 9.5351 -8.3051 0.7582 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291027822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:48 Heat of formation + Delta-G solvation = -74.960455 kcal Electronic energy + Delta-G solvation = -23802.562316 eV Core-core repulsion = 20231.544313 eV Total energy + Delta-G solvation = -3571.018003 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.67293 -40.09443 -38.32760 -36.41045 -33.65054 -32.92325 -31.47433 -31.17553 -30.07277 -28.08790 -26.37287 -24.66888 -22.95351 -22.36743 -21.69075 -20.46170 -19.87889 -19.47926 -18.14737 -17.63616 -16.76119 -16.35634 -16.23964 -15.72751 -15.05225 -14.91648 -14.55837 -14.48363 -14.18350 -14.16909 -13.85001 -13.32332 -12.94835 -12.90985 -12.66649 -12.58443 -12.42033 -12.28953 -12.00787 -11.52152 -11.47873 -11.39313 -11.03919 -10.86522 -10.69796 -10.62068 -10.53743 -10.35913 -10.19780 -10.05160 -9.88736 -9.77400 -9.64931 -9.27188 -9.02463 -8.56436 -6.07862 -4.07907 0.31066 1.05638 1.45483 2.33558 2.60778 3.07277 3.34040 3.40981 3.49640 3.70271 4.30094 4.32363 4.38479 4.45544 4.65401 4.79996 4.84846 4.88839 4.93215 5.04417 5.09574 5.11109 5.12738 5.23894 5.26764 5.27956 5.40502 5.44706 5.63769 5.71714 5.72449 5.75052 5.78553 5.92042 5.94881 5.96819 5.98899 6.06573 6.40674 6.68834 7.21800 7.29053 7.47092 7.69265 8.10880 8.45785 8.94390 9.53674 11.04642 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023947 B = 0.002073 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.953890 B =13504.427445 C =13814.728951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.527 4.527 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.094 4.094 11 C 0.461 3.539 12 O -0.508 6.508 13 O -0.356 6.356 14 C 0.142 3.858 15 C 0.044 3.956 16 N -0.449 5.449 17 C 0.076 3.924 18 C -0.012 4.012 19 C -0.112 4.112 20 C -0.119 4.119 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.108 4.108 24 C -0.255 4.255 25 S 0.151 5.849 26 H 0.264 0.736 27 H 0.026 0.974 28 H 0.022 0.978 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.983 -21.722 -1.478 33.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.132 4.132 11 C 0.305 3.695 12 O -0.394 6.394 13 O -0.274 6.274 14 C 0.064 3.936 15 C -0.234 4.234 16 N -0.165 5.165 17 C -0.057 4.057 18 C -0.034 4.034 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.146 4.146 24 C -0.395 4.395 25 S 0.406 5.594 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.040 0.960 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 24.842 -20.818 -0.873 32.424 hybrid contribution 0.680 0.418 -0.655 1.033 sum 25.522 -20.400 -1.528 32.709 Atomic orbital electron populations 1.69905 1.06269 1.27080 1.50553 1.24958 0.94738 0.99211 0.94225 0.86798 0.80562 0.83402 0.78808 1.20142 1.21314 1.18591 1.21019 0.88786 0.94823 1.51894 0.90620 1.19496 0.96970 0.89497 0.97996 1.21581 0.82885 1.03660 1.05040 1.24831 0.92699 0.80611 0.71332 1.90632 1.70483 1.32937 1.45398 1.86622 1.19172 1.36712 1.84876 1.21102 0.79117 0.88677 1.04660 1.26427 1.04287 1.01058 0.91590 1.66066 1.12766 1.05988 1.31665 1.20238 0.99794 0.91468 0.94216 1.19759 0.97005 0.92046 0.94561 1.21629 1.01697 0.93168 0.98503 1.21533 0.96324 0.99291 0.98530 1.21559 0.96369 0.96594 1.01303 1.21536 1.01187 0.94767 0.98191 1.21545 0.94233 1.00082 0.98711 1.26926 1.11849 1.04650 0.96045 1.84047 1.56286 1.07146 1.11894 0.92586 0.95532 0.95973 0.88140 0.88151 0.89000 0.88257 0.89181 0.91692 0.91462 0.91675 0.91729 0.91995 0.92012 0.91695 0.91818 0.91597 0.91867 0.80425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 7 C -0.53 -14.85 9.66 -34.44 -0.33 -15.18 16 8 H 0.08 2.23 7.99 -52.48 -0.42 1.81 16 9 C 0.00 -0.05 3.33 -27.88 -0.09 -0.14 16 10 C -0.09 -1.83 5.75 -27.88 -0.16 -1.99 16 11 C 0.46 8.56 7.96 36.01 0.29 8.84 16 12 O -0.51 -10.61 15.73 -18.74 -0.29 -10.91 16 13 O -0.36 -5.78 10.20 -39.26 -0.40 -6.18 16 14 C 0.14 1.92 6.04 36.01 0.22 2.14 16 15 C 0.04 0.55 7.03 -13.46 -0.09 0.46 16 16 N -0.45 -5.91 10.53 -8.05 -0.08 -6.00 16 17 C 0.08 0.80 5.73 -84.22 -0.48 0.32 16 18 C -0.01 -0.10 2.60 -91.77 -0.24 -0.34 16 19 C -0.11 -0.74 4.70 -26.73 -0.13 -0.86 16 20 C -0.12 -0.68 5.92 -26.73 -0.16 -0.83 16 21 C -0.12 -0.64 5.92 -26.73 -0.16 -0.79 16 22 C -0.12 -0.71 5.92 -26.75 -0.16 -0.87 16 23 C -0.11 -0.78 5.18 -26.75 -0.14 -0.92 16 24 C -0.26 -2.27 10.36 29.12 0.30 -1.97 16 25 S 0.15 1.48 23.18 -107.50 -2.49 -1.02 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.03 0.66 7.16 -51.93 -0.37 0.29 16 28 H 0.02 0.55 7.53 -51.93 -0.39 0.16 16 29 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 30 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 31 H 0.09 1.09 8.13 -51.93 -0.42 0.67 16 32 H 0.10 1.35 8.13 -51.93 -0.42 0.92 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.37 6.93 -51.93 -0.36 0.01 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.18 1.09 6.98 -52.49 -0.37 0.72 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -32.54 372.27 -9.98 -42.52 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -6.99 Total: -4.51 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -1.43 Total: -10.19 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.69 Total: -32.78 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.70 Total: -17.08 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.49 Total: -1.02 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.54 -9.98 -42.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291027822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.440 kcal (2) G-P(sol) polarization free energy of solvation -32.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds