Wall clock time and date at job start Tue Mar 31 2020 13:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00308 * 2 1 4 4 H 1.48499 * 109.46843 * 270.00057 * 3 2 1 5 5 H 1.48491 * 109.46831 * 30.00011 * 3 2 1 6 6 H 1.48498 * 109.46860 * 150.00284 * 3 2 1 7 7 C 1.37878 * 119.99567 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00349 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99894 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47089 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46945 * 180.02562 * 10 9 7 12 12 O 1.20819 * 120.00425 * 359.97438 * 11 10 9 13 13 O 1.34232 * 119.99797 * 179.97438 * 11 10 9 14 14 C 1.45192 * 117.00082 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47252 * 179.97438 * 14 13 11 16 16 N 1.29027 * 124.91378 * 90.00206 * 15 14 13 17 17 C 1.31788 * 117.12109 * 179.97438 * 16 15 14 18 18 C 1.50706 * 122.74497 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.46703 * 215.02345 * 18 17 16 20 20 C 1.53006 * 109.47207 * 180.02562 * 19 18 17 21 21 C 1.53004 * 109.46829 * 60.00210 * 20 19 18 22 22 C 1.53004 * 109.47176 * 300.00305 * 21 20 19 23 23 C 1.53001 * 109.46717 * 95.02711 * 18 17 16 24 24 C 1.33635 * 114.50125 * 0.23259 * 17 16 15 25 25 S 1.70976 * 124.91910 * 269.99842 * 15 14 13 26 26 H 0.97008 * 119.99837 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47383 * 59.99927 * 9 7 2 28 28 H 1.09003 * 109.46800 * 299.99535 * 9 7 2 29 29 H 1.08998 * 109.47193 * 59.99657 * 10 9 7 30 30 H 1.09003 * 109.46795 * 299.99385 * 10 9 7 31 31 H 1.09001 * 109.47085 * 60.00070 * 14 13 11 32 32 H 1.08999 * 109.47688 * 299.99957 * 14 13 11 33 33 H 1.08998 * 109.47477 * 335.02549 * 18 17 16 34 34 H 1.08995 * 109.47571 * 299.99842 * 19 18 17 35 35 H 1.08999 * 109.47100 * 60.00442 * 19 18 17 36 36 H 1.08998 * 109.47213 * 300.00352 * 20 19 18 37 37 H 1.08992 * 109.47700 * 179.97438 * 20 19 18 38 38 H 1.08992 * 109.47094 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.47107 * 60.00077 * 21 20 19 40 40 H 1.09007 * 109.47188 * 299.99908 * 22 21 20 41 41 H 1.08999 * 109.47222 * 179.97438 * 22 21 20 42 42 H 1.08994 * 109.47580 * 299.99400 * 23 18 17 43 43 H 1.08995 * 109.47528 * 60.00175 * 23 18 17 44 44 H 1.08001 * 126.03202 * 179.76469 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6525 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0213 -2.6367 -0.0014 11 6 5.5283 -2.6368 -0.0001 12 8 6.1325 -1.5905 0.0012 13 8 6.1994 -3.7993 -0.0006 14 6 7.6494 -3.7235 0.0001 15 6 8.2253 -5.1161 0.0001 16 7 8.5080 -5.7983 -1.0579 17 6 9.0074 -7.0047 -0.8791 18 6 9.3818 -7.9099 -2.0244 19 6 9.0870 -9.3622 -1.6440 20 6 9.4677 -10.2813 -2.8064 21 6 10.9591 -10.1267 -3.1115 22 6 11.2539 -8.6743 -3.4919 23 6 10.8730 -7.7553 -2.3301 24 6 9.1495 -7.3617 0.4008 25 16 8.5987 -6.0207 1.4021 26 1 -0.4850 0.8401 -0.0004 27 1 3.8744 -0.6810 0.8905 28 1 3.8750 -0.6798 -0.8895 29 1 3.6582 -3.1496 -0.8920 30 1 3.6576 -3.1515 0.8880 31 1 7.9850 -3.1919 0.8906 32 1 7.9858 -3.1908 -0.8894 33 1 8.8004 -7.6400 -2.9060 34 1 9.6685 -9.6321 -0.7625 35 1 8.0247 -9.4722 -1.4262 36 1 8.8866 -10.0116 -3.6883 37 1 9.2582 -11.3160 -2.5353 38 1 11.2302 -10.7811 -3.9399 39 1 11.5402 -10.3964 -2.2297 40 1 10.6727 -8.4045 -4.3738 41 1 12.3164 -8.5640 -3.7088 42 1 11.0831 -6.7207 -2.6011 43 1 11.4545 -8.0253 -1.4486 44 1 9.5351 -8.3051 0.7582 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291027822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:47 Heat of formation + Delta-G solvation = -92.422908 kcal Electronic energy + Delta-G solvation = -23803.319545 eV Core-core repulsion = 20231.544313 eV Total energy + Delta-G solvation = -3571.775232 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.70564 -41.25247 -38.95850 -37.78782 -35.64716 -33.74734 -33.37045 -31.67410 -30.93034 -29.08160 -28.09481 -25.48030 -23.82923 -23.45376 -22.73459 -21.51768 -21.11335 -20.15300 -19.41230 -18.98690 -18.42955 -17.68215 -17.31206 -16.66771 -16.28756 -15.86975 -15.71411 -15.43982 -15.10651 -14.99229 -14.93099 -14.72270 -14.48050 -13.93165 -13.77443 -13.53294 -13.36754 -13.16038 -13.07317 -12.93848 -12.65264 -12.26140 -12.04959 -12.01400 -11.97376 -11.91206 -11.80020 -11.56701 -11.42861 -11.36626 -11.14500 -11.04885 -10.78929 -10.75984 -10.48986 -9.81145 -8.31775 -6.36182 -0.53413 0.25648 0.66005 1.13294 1.35161 1.36120 1.37671 1.50582 1.95496 2.34711 2.83088 3.03581 3.54201 3.78895 3.79683 3.86894 3.90486 4.09848 4.18556 4.25213 4.29108 4.33597 4.36920 4.37231 4.44715 4.56452 4.61676 4.64587 4.73864 4.81146 4.90967 5.11639 5.14880 5.18805 5.23085 5.24778 5.27021 5.29152 5.35553 5.40016 5.43650 5.57245 5.57721 6.20924 6.63801 6.66614 6.73924 7.28832 8.83704 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023947 B = 0.002073 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.953890 B =13504.427445 C =13814.728951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.013 3.987 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.532 4.532 8 H 0.051 0.949 9 C 0.002 3.998 10 C -0.091 4.091 11 C 0.474 3.526 12 O -0.534 6.534 13 O -0.354 6.354 14 C 0.140 3.860 15 C 0.009 3.991 16 N -0.477 5.477 17 C 0.055 3.945 18 C -0.010 4.010 19 C -0.108 4.108 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.103 4.103 24 C -0.239 4.239 25 S 0.192 5.808 26 H 0.268 0.732 27 H 0.021 0.979 28 H 0.016 0.984 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.073 0.927 44 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.212 -23.203 -0.650 35.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.570 4.570 8 H 0.069 0.931 9 C -0.036 4.036 10 C -0.128 4.128 11 C 0.319 3.681 12 O -0.423 6.423 13 O -0.271 6.271 14 C 0.063 3.937 15 C -0.267 4.267 16 N -0.194 5.194 17 C -0.078 4.078 18 C -0.032 4.032 19 C -0.145 4.145 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.141 4.141 24 C -0.378 4.378 25 S 0.447 5.553 26 H 0.077 0.923 27 H 0.040 0.960 28 H 0.035 0.965 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 27.082 -22.321 -0.048 35.095 hybrid contribution 0.019 0.725 -0.899 1.154 sum 27.101 -21.597 -0.947 34.667 Atomic orbital electron populations 1.70026 1.07880 1.28209 1.52112 1.25824 0.95538 1.02984 0.94124 0.85804 0.79393 0.79203 0.79198 1.19382 1.20444 1.17962 1.21330 0.90902 0.93896 1.50869 0.93114 1.19336 0.94372 0.92554 0.97312 1.21369 0.84056 1.00881 1.06496 1.24363 0.92263 0.80749 0.70748 1.90622 1.70959 1.33920 1.46794 1.86569 1.21105 1.35197 1.84220 1.21283 0.77127 0.90079 1.05210 1.26253 1.06181 1.01207 0.93086 1.66044 1.13297 1.07225 1.32836 1.20552 1.00544 0.91097 0.95594 1.19788 0.97320 0.92828 0.93224 1.21613 1.01510 0.91928 0.99495 1.21536 0.96575 0.99639 0.97864 1.21547 0.96057 0.95923 1.01976 1.21531 1.01513 0.95161 0.97358 1.21502 0.93602 0.99414 0.99581 1.27350 1.09841 1.05332 0.95270 1.83859 1.55010 1.06383 1.10009 0.92298 0.96047 0.96518 0.87031 0.86532 0.87426 0.88914 0.91234 0.90054 0.92222 0.92522 0.90587 0.91260 0.91125 0.92498 0.91029 0.93339 0.90871 0.77261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.49 13.96 21.45 0.30 -58.19 16 2 C 0.01 0.78 5.47 84.66 0.46 1.24 16 3 Si 0.94 45.54 27.47 68.60 1.88 47.43 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.26 -12.05 6.54 99.48 0.65 -11.40 16 7 C -0.53 -30.23 9.66 25.60 0.25 -29.98 16 8 H 0.05 3.06 7.99 -2.91 -0.02 3.03 16 9 C 0.00 0.09 3.33 29.85 0.10 0.19 16 10 C -0.09 -3.46 5.75 29.85 0.17 -3.29 16 11 C 0.47 17.19 7.96 71.24 0.57 17.75 16 12 O -0.53 -21.95 15.73 21.99 0.35 -21.60 16 13 O -0.35 -11.20 10.20 -51.43 -0.52 -11.72 16 14 C 0.14 3.71 6.04 71.24 0.43 4.14 16 15 C 0.01 0.21 7.03 88.52 0.62 0.83 16 16 N -0.48 -12.43 10.53 -179.40 -1.89 -14.32 16 17 C 0.05 1.09 5.73 41.52 0.24 1.33 16 18 C -0.01 -0.16 2.60 -11.54 -0.03 -0.19 16 19 C -0.11 -1.21 4.70 30.59 0.14 -1.07 16 20 C -0.12 -1.13 5.92 30.60 0.18 -0.95 16 21 C -0.12 -0.98 5.92 30.60 0.18 -0.80 16 22 C -0.12 -1.26 5.92 30.58 0.18 -1.08 16 23 C -0.10 -1.38 5.18 30.58 0.16 -1.23 16 24 C -0.24 -3.62 10.36 66.77 0.69 -2.93 16 25 S 0.19 3.35 23.18 -56.49 -1.31 2.04 16 26 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 27 H 0.02 1.04 7.16 -2.39 -0.02 1.03 16 28 H 0.02 0.81 7.53 -2.39 -0.02 0.79 16 29 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 30 H 0.12 4.06 8.14 -2.39 -0.02 4.04 16 31 H 0.11 2.46 8.13 -2.39 -0.02 2.44 16 32 H 0.09 2.54 8.13 -2.39 -0.02 2.52 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.08 0.65 6.93 -2.39 -0.02 0.63 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.21 1.70 6.98 -2.91 -0.02 1.68 16 Total: -1.00 -70.09 372.27 4.08 -66.01 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 0.93 Total: 6.39 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 4.35 Total: -16.03 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -1.59 Total: -72.50 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.18 Total: -33.33 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.43 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.31 Total: 2.04 kcal Total: -70.09 4.08 -66.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291027822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.413 kcal (2) G-P(sol) polarization free energy of solvation -70.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds