Wall clock time and date at job start Tue Mar 31 2020 14:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99810 * 2 1 4 4 O 1.20828 * 119.99959 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99845 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.46958 * 299.99816 * 5 3 2 7 7 N 1.46505 * 109.46925 * 180.02562 * 5 3 2 8 8 C 1.34774 * 120.00336 * 85.00158 * 7 5 3 9 9 O 1.21287 * 119.99570 * 359.97438 * 8 7 5 10 10 C 1.50696 * 120.00452 * 180.02562 * 8 7 5 11 11 C 1.52994 * 109.47330 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47383 * 179.97438 * 11 10 8 13 13 H 1.08002 * 119.99561 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00355 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99695 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99884 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47131 * 60.00430 * 16 14 12 18 18 H 1.48503 * 109.46800 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47562 * 299.99823 * 16 14 12 20 20 C 1.50701 * 109.47196 * 60.00402 * 5 3 2 21 21 C 1.38263 * 119.97594 * 79.97591 * 20 5 3 22 22 C 1.38176 * 120.02823 * 180.02562 * 21 20 5 23 23 C 1.38485 * 119.97177 * 0.02562 * 22 21 20 24 24 F 1.35093 * 120.02684 * 180.25338 * 23 22 21 25 25 C 1.38445 * 119.94716 * 359.97438 * 23 22 21 26 26 C 1.50694 * 120.00973 * 179.97438 * 25 23 22 27 27 C 1.38218 * 119.97632 * 359.97438 * 25 23 22 28 28 H 1.08996 * 109.46993 * 299.99384 * 1 2 3 29 29 H 1.09001 * 109.47023 * 59.99856 * 1 2 3 30 30 H 1.09002 * 109.46663 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99539 * 264.99923 * 7 5 3 32 32 H 1.09010 * 109.46508 * 299.99509 * 10 8 7 33 33 H 1.08992 * 109.47377 * 59.99203 * 10 8 7 34 34 H 1.08997 * 109.46973 * 299.99594 * 11 10 8 35 35 H 1.08997 * 109.47628 * 59.99781 * 11 10 8 36 36 H 0.97002 * 119.99507 * 180.02562 * 15 14 12 37 37 H 1.08000 * 119.98569 * 0.02562 * 21 20 5 38 38 H 1.08000 * 120.01901 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.47584 * 89.99775 * 26 25 23 40 40 H 1.09004 * 109.47177 * 209.99980 * 26 25 23 41 41 H 1.09004 * 109.47536 * 329.99440 * 26 25 23 42 42 H 1.07992 * 119.98884 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9563 0.7806 0.8891 7 7 3.9816 2.6798 0.0002 8 6 4.0757 3.3542 1.1633 9 8 3.8160 2.7980 2.2093 10 6 4.5023 4.7995 1.1640 11 6 4.5265 5.3234 2.6012 12 6 4.9538 6.7686 2.6020 13 1 5.1854 7.2637 1.6705 14 6 5.0490 7.4587 3.7918 15 7 4.7675 6.8556 4.9262 16 14 5.5794 9.2498 3.7927 17 1 4.6206 10.0504 2.9895 18 1 5.6015 9.7587 5.1877 19 1 6.9369 9.3645 3.2019 20 6 4.1046 0.5921 -1.2314 21 6 4.1032 1.2543 -2.4452 22 6 4.5961 0.6290 -3.5745 23 6 5.0911 -0.6616 -3.4905 24 9 5.5780 -1.2720 -4.5929 25 6 5.0920 -1.3236 -2.2746 26 6 5.6298 -2.7283 -2.1816 27 6 4.5994 -0.6958 -1.1460 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.1890 3.1246 -0.8365 32 1 5.4983 4.8844 0.7291 33 1 3.7976 5.3867 0.5754 34 1 3.5305 5.2385 3.0357 35 1 5.2311 4.7363 3.1902 36 1 4.8342 7.3412 5.7632 37 1 3.7168 2.2606 -2.5106 38 1 4.5953 1.1466 -4.5225 39 1 6.6960 -2.6951 -1.9574 40 1 5.1084 -3.2652 -1.3891 41 1 5.4739 -3.2407 -3.1310 42 1 4.6004 -1.2118 -0.1974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291655762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:21 Heat of formation + Delta-G solvation = -150.975216 kcal Electronic energy + Delta-G solvation = -26797.130491 eV Core-core repulsion = 22656.603065 eV Total energy + Delta-G solvation = -4140.527426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.24977 -41.03874 -39.56648 -38.95488 -36.57561 -35.09703 -33.46530 -33.04885 -31.79261 -30.75523 -28.58000 -27.46986 -26.83288 -25.30885 -23.19773 -22.14861 -21.90017 -20.42806 -19.85923 -17.96421 -17.86667 -17.28246 -17.05118 -16.76562 -16.47039 -16.01984 -15.89299 -15.47929 -14.95079 -14.70098 -14.41607 -14.18049 -13.94581 -13.74002 -13.65341 -13.49820 -13.27942 -13.13322 -12.54907 -12.42415 -12.30540 -12.19503 -12.04262 -11.87975 -11.37618 -11.17601 -10.91039 -10.89868 -10.76513 -10.61713 -9.95720 -9.70642 -9.37599 -9.29659 -9.15233 -9.07729 -8.89002 -8.30969 -5.95145 -3.99563 0.62726 0.81054 2.10619 2.35998 3.01595 3.21485 3.35528 3.39981 3.41565 3.51652 3.85349 4.06918 4.25370 4.37534 4.48358 4.70401 4.75994 4.83430 4.94975 4.96955 5.06148 5.16831 5.22881 5.37142 5.37543 5.39828 5.51939 5.58178 5.67017 5.73689 5.86691 5.97521 6.19448 6.21546 6.23378 6.37926 6.45668 6.86106 7.64451 7.65755 7.74846 7.86303 8.07480 8.37780 8.62203 9.08274 9.63823 11.15826 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015348 B = 0.002776 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.899011 B =10084.819249 C =11097.829438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.451 3.549 4 O -0.486 6.486 5 C 0.202 3.798 6 H 0.135 0.865 7 N -0.722 5.722 8 C 0.519 3.481 9 O -0.527 6.527 10 C -0.127 4.127 11 C 0.037 3.963 12 C -0.528 4.528 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.098 4.098 21 C -0.085 4.085 22 C -0.144 4.144 23 C 0.102 3.898 24 F -0.137 7.137 25 C -0.116 4.116 26 C -0.115 4.115 27 C -0.062 4.062 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.404 0.596 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.261 0.739 37 H 0.135 0.865 38 H 0.140 0.860 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.166 -20.127 -18.539 27.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.273 6.273 3 C 0.291 3.709 4 O -0.371 6.371 5 C 0.094 3.906 6 H 0.152 0.848 7 N -0.378 5.378 8 C 0.309 3.691 9 O -0.401 6.401 10 C -0.167 4.167 11 C 0.000 4.000 12 C -0.566 4.566 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.528 5.528 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.099 4.099 21 C -0.103 4.103 22 C -0.163 4.163 23 C 0.083 3.917 24 F -0.115 7.115 25 C -0.116 4.116 26 C -0.172 4.172 27 C -0.081 4.081 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.240 0.760 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.153 0.847 38 H 0.158 0.842 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.586 -20.197 -17.575 26.898 hybrid contribution 0.088 1.232 -0.583 1.366 sum -2.498 -18.965 -18.158 26.375 Atomic orbital electron populations 1.23265 0.76352 1.03554 1.02666 1.86485 1.23381 1.33221 1.84207 1.24215 0.92172 0.81782 0.72764 1.90705 1.66374 1.36290 1.43703 1.19010 0.86747 0.85778 0.99056 0.84773 1.46129 1.70880 1.09810 1.10984 1.21732 0.75101 0.90121 0.82157 1.90679 1.48061 1.69890 1.31470 1.21882 1.01538 0.88346 1.04931 1.18907 0.98531 0.95052 0.87536 1.21172 1.46321 0.96263 0.92828 0.92603 1.25022 0.95462 0.98239 0.95642 1.69991 1.48511 1.36647 0.97692 0.86642 0.79124 0.85124 0.76979 1.20253 1.21295 1.20230 1.19505 1.01584 0.95244 0.93569 1.20837 0.98120 1.00188 0.91154 1.21080 1.01262 0.93726 1.00232 1.17598 0.99311 0.91986 0.82787 1.91489 1.85517 1.82957 1.51576 1.19917 1.01882 0.97995 0.91856 1.20750 1.01534 0.91403 1.03470 1.20786 0.95637 0.93306 0.98356 0.91706 0.92031 0.88111 0.75969 0.89892 0.89823 0.95753 0.95741 0.92891 0.84693 0.84207 0.90511 0.90569 0.91114 0.84099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.35 10.48 -39.25 -0.41 -4.76 16 3 C 0.45 6.50 7.27 36.01 0.26 6.77 16 4 O -0.49 -8.57 16.07 -18.75 -0.30 -8.87 16 5 C 0.20 2.57 2.68 -70.23 -0.19 2.38 16 6 H 0.13 1.74 7.44 -51.93 -0.39 1.36 16 7 N -0.72 -10.22 4.56 -56.06 -0.26 -10.48 16 8 C 0.52 9.99 7.66 -10.99 -0.08 9.90 16 9 O -0.53 -12.26 15.64 5.55 0.09 -12.17 16 10 C -0.13 -2.58 5.64 -27.89 -0.16 -2.74 16 11 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 12 C -0.53 -15.02 9.11 -34.44 -0.31 -15.33 16 13 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.55 13.29 55.43 0.74 -26.81 16 16 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 C -0.10 -0.97 4.88 -104.62 -0.51 -1.48 16 21 C -0.08 -0.75 9.05 -39.60 -0.36 -1.11 16 22 C -0.14 -1.20 10.03 -39.51 -0.40 -1.59 16 23 C 0.10 0.93 7.24 -39.41 -0.29 0.64 16 24 F -0.14 -1.30 16.48 2.25 0.04 -1.27 16 25 C -0.12 -0.97 5.89 -104.56 -0.62 -1.58 16 26 C -0.12 -0.72 9.83 36.00 0.35 -0.37 16 27 C -0.06 -0.54 9.32 -39.59 -0.37 -0.91 16 28 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 29 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.40 4.51 6.87 -40.82 -0.28 4.23 16 32 H 0.08 1.49 8.14 -51.92 -0.42 1.07 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 34 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.14 1.04 6.92 -52.49 -0.36 0.68 16 38 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.38 8.09 -51.93 -0.42 -0.04 16 41 H 0.07 0.43 7.64 -51.93 -0.40 0.04 16 42 H 0.14 0.99 8.03 -52.49 -0.42 0.57 16 LS Contribution 370.38 15.07 5.58 5.58 Total: -1.00 -36.39 370.38 -6.97 -43.35 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -5.61 Total: 0.20 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -1.81 Total: -1.53 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.48 Total: -37.29 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.63 Total: -25.80 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.39 -6.97 -43.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291655762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.621 kcal (2) G-P(sol) polarization free energy of solvation -36.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds