Wall clock time and date at job start Tue Mar 31 2020 14:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99810 * 2 1 4 4 O 1.20828 * 119.99959 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99845 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.46958 * 299.99816 * 5 3 2 7 7 N 1.46505 * 109.46925 * 180.02562 * 5 3 2 8 8 C 1.34774 * 120.00336 * 85.00158 * 7 5 3 9 9 O 1.21287 * 119.99570 * 359.97438 * 8 7 5 10 10 C 1.50696 * 120.00452 * 180.02562 * 8 7 5 11 11 C 1.52994 * 109.47330 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47383 * 179.97438 * 11 10 8 13 13 H 1.08002 * 119.99561 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00355 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99695 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99884 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47131 * 60.00430 * 16 14 12 18 18 H 1.48503 * 109.46800 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47562 * 299.99823 * 16 14 12 20 20 C 1.50701 * 109.47196 * 60.00402 * 5 3 2 21 21 C 1.38263 * 119.97594 * 79.97591 * 20 5 3 22 22 C 1.38176 * 120.02823 * 180.02562 * 21 20 5 23 23 C 1.38485 * 119.97177 * 0.02562 * 22 21 20 24 24 F 1.35093 * 120.02684 * 180.25338 * 23 22 21 25 25 C 1.38445 * 119.94716 * 359.97438 * 23 22 21 26 26 C 1.50694 * 120.00973 * 179.97438 * 25 23 22 27 27 C 1.38218 * 119.97632 * 359.97438 * 25 23 22 28 28 H 1.08996 * 109.46993 * 299.99384 * 1 2 3 29 29 H 1.09001 * 109.47023 * 59.99856 * 1 2 3 30 30 H 1.09002 * 109.46663 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99539 * 264.99923 * 7 5 3 32 32 H 1.09010 * 109.46508 * 299.99509 * 10 8 7 33 33 H 1.08992 * 109.47377 * 59.99203 * 10 8 7 34 34 H 1.08997 * 109.46973 * 299.99594 * 11 10 8 35 35 H 1.08997 * 109.47628 * 59.99781 * 11 10 8 36 36 H 0.97002 * 119.99507 * 180.02562 * 15 14 12 37 37 H 1.08000 * 119.98569 * 0.02562 * 21 20 5 38 38 H 1.08000 * 120.01901 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.47584 * 89.99775 * 26 25 23 40 40 H 1.09004 * 109.47177 * 209.99980 * 26 25 23 41 41 H 1.09004 * 109.47536 * 329.99440 * 26 25 23 42 42 H 1.07992 * 119.98884 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9563 0.7806 0.8891 7 7 3.9816 2.6798 0.0002 8 6 4.0757 3.3542 1.1633 9 8 3.8160 2.7980 2.2093 10 6 4.5023 4.7995 1.1640 11 6 4.5265 5.3234 2.6012 12 6 4.9538 6.7686 2.6020 13 1 5.1854 7.2637 1.6705 14 6 5.0490 7.4587 3.7918 15 7 4.7675 6.8556 4.9262 16 14 5.5794 9.2498 3.7927 17 1 4.6206 10.0504 2.9895 18 1 5.6015 9.7587 5.1877 19 1 6.9369 9.3645 3.2019 20 6 4.1046 0.5921 -1.2314 21 6 4.1032 1.2543 -2.4452 22 6 4.5961 0.6290 -3.5745 23 6 5.0911 -0.6616 -3.4905 24 9 5.5780 -1.2720 -4.5929 25 6 5.0920 -1.3236 -2.2746 26 6 5.6298 -2.7283 -2.1816 27 6 4.5994 -0.6958 -1.1460 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.1890 3.1246 -0.8365 32 1 5.4983 4.8844 0.7291 33 1 3.7976 5.3867 0.5754 34 1 3.5305 5.2385 3.0357 35 1 5.2311 4.7363 3.1902 36 1 4.8342 7.3412 5.7632 37 1 3.7168 2.2606 -2.5106 38 1 4.5953 1.1466 -4.5225 39 1 6.6960 -2.6951 -1.9574 40 1 5.1084 -3.2652 -1.3891 41 1 5.4739 -3.2407 -3.1310 42 1 4.6004 -1.2118 -0.1974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291655762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:20 Heat of formation + Delta-G solvation = -174.071749 kcal Electronic energy + Delta-G solvation = -26798.132032 eV Core-core repulsion = 22656.603065 eV Total energy + Delta-G solvation = -4141.528967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.94850 -42.13510 -40.62206 -40.12427 -37.70227 -36.27789 -35.55472 -33.76671 -33.23334 -32.26385 -29.50030 -28.32151 -27.88056 -26.94610 -24.04637 -23.64838 -22.94977 -21.52623 -21.31596 -19.01274 -18.89530 -18.58017 -18.22346 -17.92567 -17.55213 -17.30152 -16.76915 -16.70627 -16.41166 -16.29147 -15.66157 -15.16979 -14.86602 -14.72595 -14.37772 -14.27916 -14.26331 -14.20208 -14.15475 -13.92153 -13.25806 -13.21876 -13.14040 -12.85998 -12.77683 -12.67300 -12.49523 -12.01358 -11.94364 -11.91473 -11.88086 -11.65466 -11.32988 -10.93339 -10.56922 -10.44993 -9.96042 -9.64160 -8.17268 -6.31182 -0.09568 0.16941 0.98485 1.24829 1.42699 1.47251 1.54811 1.75541 2.10198 2.43464 2.56474 3.12761 3.15784 3.25573 3.59406 3.71159 3.80207 3.89107 4.03033 4.16825 4.24967 4.26744 4.30534 4.49900 4.54559 4.58765 4.64127 4.75600 4.78069 4.88668 5.00769 5.06441 5.12169 5.18008 5.21865 5.26557 5.32852 5.50348 5.63347 5.80021 5.85558 6.17820 6.37242 6.55015 6.86483 7.16289 7.38854 8.95271 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015348 B = 0.002776 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.899011 B =10084.819249 C =11097.829438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.452 3.548 4 O -0.525 6.525 5 C 0.204 3.796 6 H 0.131 0.869 7 N -0.701 5.701 8 C 0.522 3.478 9 O -0.577 6.577 10 C -0.118 4.118 11 C 0.043 3.957 12 C -0.544 4.544 13 H 0.077 0.923 14 C -0.007 4.007 15 N -0.938 5.938 16 Si 0.974 3.026 17 H -0.264 1.264 18 H -0.288 1.288 19 H -0.260 1.260 20 C -0.106 4.106 21 C -0.088 4.088 22 C -0.142 4.142 23 C 0.092 3.908 24 F -0.141 7.141 25 C -0.117 4.117 26 C -0.116 4.116 27 C -0.063 4.063 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.139 0.861 31 H 0.421 0.579 32 H 0.113 0.887 33 H 0.102 0.898 34 H -0.021 1.021 35 H -0.012 1.012 36 H 0.263 0.737 37 H 0.145 0.855 38 H 0.159 0.841 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.452 -20.164 -20.973 29.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.293 3.707 4 O -0.413 6.413 5 C 0.096 3.904 6 H 0.149 0.851 7 N -0.356 5.356 8 C 0.312 3.688 9 O -0.455 6.455 10 C -0.158 4.158 11 C 0.005 3.995 12 C -0.582 4.582 13 H 0.095 0.905 14 C -0.204 4.204 15 N -0.577 5.577 16 Si 0.797 3.203 17 H -0.189 1.189 18 H -0.214 1.214 19 H -0.185 1.185 20 C -0.106 4.106 21 C -0.106 4.106 22 C -0.160 4.160 23 C 0.072 3.928 24 F -0.119 7.119 25 C -0.118 4.118 26 C -0.172 4.172 27 C -0.082 4.082 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.157 0.843 31 H 0.260 0.740 32 H 0.132 0.868 33 H 0.120 0.880 34 H -0.003 1.003 35 H 0.006 0.994 36 H 0.071 0.929 37 H 0.163 0.837 38 H 0.177 0.823 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.864 -20.268 -20.093 28.601 hybrid contribution -0.188 1.108 0.128 1.131 sum -2.052 -19.160 -19.966 27.748 Atomic orbital electron populations 1.23577 0.74738 1.05948 1.02270 1.86477 1.24935 1.31886 1.83493 1.24485 0.92730 0.81816 0.71632 1.90688 1.67319 1.37535 1.45802 1.19091 0.86089 0.84632 1.00580 0.85144 1.45753 1.69185 1.10533 1.10131 1.21442 0.74739 0.89889 0.82734 1.90663 1.50554 1.70761 1.33550 1.21654 1.03992 0.89363 1.00751 1.18684 0.94755 0.94939 0.91106 1.21683 1.45787 0.96930 0.93762 0.90528 1.26135 0.95347 1.03816 0.95136 1.70175 1.49984 1.39005 0.98585 0.85377 0.79445 0.78355 0.77086 1.18889 1.21362 1.18489 1.19322 1.02894 0.95833 0.92595 1.20956 0.98085 1.00691 0.90863 1.21266 1.00419 0.93506 1.00816 1.17830 0.99557 0.92441 0.82937 1.91481 1.85607 1.83065 1.51786 1.20132 1.01346 0.98859 0.91430 1.20818 1.02019 0.90284 1.04093 1.20941 0.95148 0.92888 0.99188 0.92953 0.91650 0.84328 0.73959 0.86843 0.87952 1.00264 0.99394 0.92864 0.83684 0.82304 0.89840 0.89225 0.91001 0.82719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.35 -8.29 10.48 -51.39 -0.54 -8.83 16 3 C 0.45 12.93 7.27 71.24 0.52 13.45 16 4 O -0.53 -18.70 16.07 21.96 0.35 -18.35 16 5 C 0.20 5.07 2.68 43.50 0.12 5.18 16 6 H 0.13 3.40 7.44 -2.39 -0.02 3.38 16 7 N -0.70 -19.31 4.56 -449.68 -2.05 -21.36 16 8 C 0.52 20.32 7.66 87.66 0.67 20.99 16 9 O -0.58 -28.02 15.64 -3.05 -0.05 -28.07 16 10 C -0.12 -4.77 5.64 29.84 0.17 -4.60 16 11 C 0.04 2.40 4.26 29.85 0.13 2.53 16 12 C -0.54 -31.11 9.11 25.60 0.23 -30.88 16 13 H 0.08 3.97 7.74 -2.91 -0.02 3.94 16 14 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 15 N -0.94 -59.86 13.29 21.45 0.28 -59.58 16 16 Si 0.97 44.53 29.54 68.60 2.03 46.55 16 17 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 18 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 20 C -0.11 -1.93 4.88 -19.86 -0.10 -2.03 16 21 C -0.09 -1.37 9.05 22.26 0.20 -1.17 16 22 C -0.14 -2.02 10.03 22.31 0.22 -1.80 16 23 C 0.09 1.47 7.24 22.38 0.16 1.64 16 24 F -0.14 -2.43 16.48 44.97 0.74 -1.69 16 25 C -0.12 -1.72 5.89 -19.82 -0.12 -1.84 16 26 C -0.12 -1.21 9.83 71.23 0.70 -0.51 16 27 C -0.06 -0.98 9.32 22.26 0.21 -0.78 16 28 H 0.05 1.08 8.13 -2.39 -0.02 1.06 16 29 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 30 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.42 8.63 6.87 -92.71 -0.64 7.99 16 32 H 0.11 3.87 8.14 -2.38 -0.02 3.85 16 33 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 34 H -0.02 -1.36 8.10 -2.39 -0.02 -1.37 16 35 H -0.01 -0.77 8.10 -2.39 -0.02 -0.79 16 36 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 37 H 0.15 1.91 6.92 -2.91 -0.02 1.89 16 38 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.09 0.69 8.09 -2.38 -0.02 0.67 16 41 H 0.07 0.74 7.64 -2.38 -0.02 0.73 16 42 H 0.16 1.89 8.03 -2.91 -0.02 1.87 16 Total: -1.00 -82.16 370.38 5.96 -76.20 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.41 Total: 13.17 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 4.77 Total: 1.95 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -1.76 Total: -80.94 kcal Atomic # 8 Polarization: -55.01 SS G_CDS: -0.23 Total: -55.24 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.74 Total: -1.69 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -82.16 5.96 -76.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291655762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.871 kcal (2) G-P(sol) polarization free energy of solvation -82.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds