Wall clock time and date at job start Tue Mar 31 2020 13:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 119.99930 * 2 1 4 4 H 1.48503 * 109.47039 * 240.00360 * 3 2 1 5 5 H 1.48505 * 109.46736 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47143 * 120.00042 * 3 2 1 7 7 C 1.37876 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99998 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99947 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47221 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47168 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00313 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00023 * 180.02562 * 11 10 9 14 14 C 1.47422 * 125.64877 * 5.03711 * 13 11 10 15 15 C 1.54913 * 104.83281 * 155.90919 * 14 13 11 16 16 C 1.55160 * 101.58172 * 37.00806 * 15 14 13 17 17 C 1.47026 * 125.64578 * 185.08189 * 13 11 10 18 18 H 1.09002 * 110.00690 * 300.50563 * 17 13 11 19 19 C 1.52994 * 109.88510 * 61.60403 * 17 13 11 20 20 C 1.52999 * 109.46971 * 183.42668 * 19 17 13 21 21 H 1.08999 * 109.47622 * 304.08627 * 20 19 17 22 22 O 1.42899 * 109.47276 * 64.09371 * 20 19 17 23 23 C 1.50708 * 109.47046 * 184.08818 * 20 19 17 24 24 C 1.33384 * 125.19994 * 99.72081 * 23 20 19 25 25 C 1.38429 * 114.91923 * 179.85848 * 24 23 20 26 26 C 1.33387 * 114.91956 * 0.43173 * 25 24 23 27 27 S 1.75887 * 125.20268 * 280.02567 * 23 20 19 28 28 H 0.96999 * 120.00352 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47426 * 59.99571 * 9 7 2 30 30 H 1.09004 * 109.46760 * 300.00115 * 9 7 2 31 31 H 1.08999 * 109.47269 * 60.00310 * 10 9 7 32 32 H 1.08995 * 109.47602 * 299.99883 * 10 9 7 33 33 H 1.09006 * 110.36447 * 274.74628 * 14 13 11 34 34 H 1.08995 * 110.36985 * 36.95817 * 14 13 11 35 35 H 1.08996 * 111.00316 * 278.93453 * 15 14 13 36 36 H 1.09001 * 111.00668 * 155.08057 * 15 14 13 37 37 H 1.08999 * 110.72047 * 206.13502 * 16 15 14 38 38 H 1.08996 * 110.71803 * 82.86249 * 16 15 14 39 39 H 1.08998 * 109.47226 * 303.43000 * 19 17 13 40 40 H 1.08998 * 109.47214 * 63.43071 * 19 17 13 41 41 H 0.96696 * 114.00508 * 59.98898 * 22 20 19 42 42 H 1.07996 * 122.54555 * 0.02562 * 24 23 20 43 43 H 1.07997 * 122.54409 * 180.20196 * 25 24 23 44 44 H 1.08004 * 125.20599 * 179.78967 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4918 -4.9671 -0.0033 12 8 0.2790 -4.9672 -0.0033 13 7 2.1658 -6.1343 -0.0037 14 6 3.6288 -6.2817 0.1015 15 6 3.8440 -7.7073 0.6682 16 6 2.7134 -8.4985 -0.0411 17 6 1.5636 -7.4713 -0.1101 18 1 0.8705 -7.6349 0.7152 19 6 0.8256 -7.6051 -1.4436 20 6 0.1316 -8.9671 -1.5079 21 1 0.8661 -9.7571 -1.3512 22 8 -0.8703 -9.0398 -0.4916 23 6 -0.5111 -9.1400 -2.8601 24 6 0.0048 -9.8378 -3.8730 25 6 -0.7688 -9.8585 -5.0208 26 6 -1.9085 -9.1699 -4.9429 27 16 -2.0525 -8.4463 -3.3462 28 1 -0.4850 0.8400 0.0004 29 1 0.6247 -2.5563 -0.8919 30 1 0.6241 -2.5574 0.8880 31 1 2.8719 -3.6050 0.8873 32 1 2.8719 -3.6035 -0.8926 33 1 4.0909 -6.1905 -0.8815 34 1 4.0373 -5.5353 0.7826 35 1 3.7116 -7.7218 1.7500 36 1 4.8247 -8.0941 0.3910 37 1 2.4205 -9.3661 0.5500 38 1 3.0225 -8.7990 -1.0421 39 1 0.0810 -6.8136 -1.5278 40 1 1.5389 -7.5217 -2.2635 41 1 -1.5585 -8.3649 -0.5687 42 1 0.9528 -10.3502 -3.8023 43 1 -0.4703 -10.3886 -5.9131 44 1 -2.6325 -9.0720 -5.7384 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291937051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:34 Heat of formation + Delta-G solvation = -65.200829 kcal Electronic energy + Delta-G solvation = -24973.877891 eV Core-core repulsion = 21403.283097 eV Total energy + Delta-G solvation = -3570.594794 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.09894 -38.57974 -37.35328 -36.68402 -33.48317 -32.44361 -31.52398 -30.70946 -29.97546 -26.87250 -25.81842 -24.52876 -23.14332 -22.32671 -21.55446 -20.29188 -19.68067 -18.57527 -17.90103 -16.99490 -16.64826 -16.00934 -15.77347 -15.45557 -15.07695 -14.78152 -14.44269 -14.27270 -13.93794 -13.55346 -13.38041 -13.10640 -12.92901 -12.86201 -12.42767 -12.29089 -12.17193 -12.09904 -11.85679 -11.48494 -11.34180 -11.08746 -10.95232 -10.92050 -10.84728 -10.72169 -10.60337 -10.46710 -9.93240 -9.63426 -9.16485 -9.02014 -8.87289 -8.65775 -8.36135 -8.29034 -5.95042 -3.99494 0.76332 1.40267 1.79572 2.50274 3.22916 3.28959 3.34803 3.39573 3.41506 4.20865 4.32729 4.44380 4.48823 4.50083 4.79884 4.83171 4.92861 5.04740 5.13983 5.25134 5.29560 5.31889 5.39710 5.41154 5.52226 5.61788 5.63662 5.73676 5.75308 5.83768 5.98710 6.03610 6.08433 6.20454 6.23625 6.26142 6.26933 6.64505 6.91967 7.34792 7.74963 7.87431 7.89574 8.08220 8.39662 8.77170 9.08699 9.63854 11.15858 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013006 B = 0.003050 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.271752 B = 9177.202693 C =10604.972904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.125 4.125 11 C 0.526 3.474 12 O -0.531 6.531 13 N -0.628 5.628 14 C 0.101 3.899 15 C -0.133 4.133 16 C -0.130 4.130 17 C 0.142 3.858 18 H 0.081 0.919 19 C -0.159 4.159 20 C 0.183 3.817 21 H 0.116 0.884 22 O -0.551 6.551 23 C -0.208 4.208 24 C -0.135 4.135 25 C -0.136 4.136 26 C -0.216 4.216 27 S 0.117 5.883 28 H 0.261 0.739 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.378 0.622 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.008 -23.804 -6.161 24.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.165 4.165 11 C 0.317 3.683 12 O -0.406 6.406 13 N -0.364 5.364 14 C -0.022 4.022 15 C -0.171 4.171 16 C -0.168 4.168 17 C 0.038 3.962 18 H 0.099 0.901 19 C -0.198 4.198 20 C 0.122 3.878 21 H 0.133 0.867 22 O -0.356 6.356 23 C -0.326 4.326 24 C -0.166 4.166 25 C -0.167 4.167 26 C -0.351 4.351 27 S 0.381 5.619 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.226 0.774 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.392 -23.158 -5.262 23.868 hybrid contribution 1.255 0.536 -1.184 1.807 sum 3.647 -22.622 -6.446 23.804 Atomic orbital electron populations 1.69983 1.06043 1.26679 1.50101 1.25017 0.94822 0.99183 0.95305 0.86660 0.79559 0.83211 0.78538 1.20256 1.21274 1.20252 1.21177 0.92864 0.91028 1.51510 0.92709 1.18891 0.93151 0.89334 0.98559 1.21857 1.00652 0.91717 1.02244 1.21303 0.88159 0.84438 0.74363 1.90651 1.14224 1.86996 1.48753 1.48820 1.07158 1.05331 1.75125 1.22254 0.81664 0.97419 1.00868 1.22773 0.98872 0.94702 1.00730 1.22752 0.94982 0.97719 1.01347 1.21375 0.94903 0.82747 0.97168 0.90128 1.22700 1.01441 0.97269 0.98383 1.20343 0.88792 0.97940 0.80754 0.86672 1.86569 1.39361 1.58426 1.51285 1.25524 1.00212 1.05232 1.01594 1.20049 1.01835 1.02065 0.92636 1.20158 0.94767 1.02160 0.99612 1.25667 1.03140 1.05474 1.00846 1.84451 1.19036 1.50942 1.07450 0.92900 0.95895 0.95837 0.90445 0.90406 0.91670 0.90288 0.90578 0.90022 0.90100 0.90688 0.89650 0.90604 0.77384 0.84299 0.84294 0.81852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.57 13.29 55.43 0.74 -26.83 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.53 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 1.04 4.26 -27.89 -0.12 0.92 16 10 C -0.12 -2.61 4.73 -27.89 -0.13 -2.74 16 11 C 0.53 10.46 7.58 -10.98 -0.08 10.37 16 12 O -0.53 -12.53 15.17 5.56 0.08 -12.45 16 13 N -0.63 -9.40 3.07 -163.01 -0.50 -9.90 16 14 C 0.10 1.13 6.65 -2.53 -0.02 1.11 16 15 C -0.13 -1.12 7.09 -24.58 -0.17 -1.29 16 16 C -0.13 -1.14 5.46 -24.89 -0.14 -1.28 16 17 C 0.14 1.80 2.82 -66.95 -0.19 1.61 16 18 H 0.08 1.17 7.70 -51.93 -0.40 0.77 16 19 C -0.16 -1.98 4.33 -26.73 -0.12 -2.10 16 20 C 0.18 1.96 3.31 -27.88 -0.09 1.86 16 21 H 0.12 1.03 7.28 -51.93 -0.38 0.65 16 22 O -0.55 -6.61 12.71 -35.23 -0.45 -7.06 16 23 C -0.21 -2.24 5.48 -36.00 -0.20 -2.44 16 24 C -0.14 -1.30 10.04 -41.21 -0.41 -1.71 16 25 C -0.14 -1.24 10.18 -41.21 -0.42 -1.66 16 26 C -0.22 -2.04 11.23 29.04 0.33 -1.71 16 27 S 0.12 1.28 22.64 -107.50 -2.43 -1.15 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.08 1.49 7.76 -51.93 -0.40 1.09 16 32 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.87 7.51 -51.93 -0.39 0.48 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.56 7.79 -51.93 -0.40 0.16 16 39 H 0.08 1.36 6.92 -51.93 -0.36 1.00 16 40 H 0.08 0.91 8.06 -51.93 -0.42 0.49 16 41 H 0.38 4.23 8.45 45.56 0.39 4.62 16 42 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.16 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -34.64 374.07 -10.25 -44.89 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.13 Total: 2.95 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -2.17 Total: -12.84 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.24 Total: -36.73 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.36 Total: -19.50 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.43 Total: -1.15 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.64 -10.25 -44.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291937051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.312 kcal (2) G-P(sol) polarization free energy of solvation -34.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds