Wall clock time and date at job start Tue Mar 31 2020 13:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00440 * 2 1 4 4 H 1.48504 * 109.47101 * 239.99974 * 3 2 1 5 5 H 1.48505 * 109.47084 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46991 * 119.99768 * 3 2 1 7 7 C 1.37884 * 119.99565 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99936 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99804 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46750 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46753 * 179.97438 * 10 9 7 12 12 O 1.21273 * 120.00387 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99665 * 180.02562 * 11 10 9 14 14 C 1.47427 * 125.64752 * 5.05798 * 13 11 10 15 15 C 1.54913 * 104.82837 * 155.89159 * 14 13 11 16 16 C 1.55157 * 101.58230 * 37.01453 * 15 14 13 17 17 C 1.47019 * 125.64749 * 185.08613 * 13 11 10 18 18 H 1.08998 * 110.01291 * 300.52765 * 17 13 11 19 19 C 1.52998 * 109.88503 * 61.62022 * 17 13 11 20 20 C 1.53004 * 109.47235 * 183.97875 * 19 17 13 21 21 H 1.09001 * 109.46765 * 54.32786 * 20 19 17 22 22 O 1.42888 * 109.47133 * 294.32263 * 20 19 17 23 23 C 1.50701 * 109.46859 * 174.32297 * 20 19 17 24 24 C 1.33393 * 125.19997 * 265.00025 * 23 20 19 25 25 C 1.38427 * 114.91607 * 179.97438 * 24 23 20 26 26 C 1.33393 * 114.92387 * 359.97438 * 25 24 23 27 27 S 1.75878 * 125.20458 * 84.69772 * 23 20 19 28 28 H 0.97005 * 119.99373 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47275 * 59.99745 * 9 7 2 30 30 H 1.09002 * 109.47156 * 299.99509 * 9 7 2 31 31 H 1.09001 * 109.47052 * 60.00362 * 10 9 7 32 32 H 1.08994 * 109.47362 * 300.00048 * 10 9 7 33 33 H 1.08995 * 110.36691 * 37.06095 * 14 13 11 34 34 H 1.08994 * 110.46047 * 274.77646 * 14 13 11 35 35 H 1.08991 * 111.00786 * 278.93913 * 15 14 13 36 36 H 1.09005 * 111.00048 * 155.08253 * 15 14 13 37 37 H 1.09002 * 110.72211 * 206.13353 * 16 15 14 38 38 H 1.08993 * 110.72522 * 82.85576 * 16 15 14 39 39 H 1.08999 * 109.47198 * 63.97714 * 19 17 13 40 40 H 1.09006 * 109.47114 * 303.98002 * 19 17 13 41 41 H 0.96700 * 114.00669 * 300.00412 * 22 20 19 42 42 H 1.07997 * 122.54419 * 359.96186 * 24 23 20 43 43 H 1.08004 * 122.53676 * 180.02562 * 25 24 23 44 44 H 1.07997 * 125.20259 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4914 -4.9672 0.0012 12 8 0.2786 -4.9672 0.0011 13 7 2.1652 -6.1345 0.0018 14 6 3.6283 -6.2819 0.1076 15 6 3.8431 -7.7070 0.6758 16 6 2.7126 -8.4987 -0.0332 17 6 1.5630 -7.4715 -0.1035 18 1 0.8695 -7.6343 0.7216 19 6 0.8254 -7.6065 -1.4371 20 6 0.1199 -8.9630 -1.4947 21 1 -0.5202 -9.0770 -0.6199 22 8 1.0954 -10.0070 -1.5105 23 6 -0.7188 -9.0402 -2.7444 24 6 -2.0190 -8.7510 -2.8169 25 6 -2.5792 -8.8948 -4.0746 26 6 -1.7338 -9.3002 -5.0234 27 16 -0.1315 -9.5182 -4.3318 28 1 -0.4849 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6239 -2.5567 0.8903 31 1 2.8716 -3.6045 0.8906 32 1 2.8717 -3.6045 -0.8894 33 1 4.0363 -5.5361 0.7897 34 1 4.0923 -6.1911 -0.8745 35 1 3.7103 -7.7204 1.7575 36 1 4.8238 -8.0941 0.3992 37 1 2.4194 -9.3658 0.5587 38 1 3.0220 -8.8002 -1.0338 39 1 1.5403 -7.5337 -2.2567 40 1 0.0876 -6.8091 -1.5266 41 1 1.7010 -9.9681 -2.2634 42 1 -2.5913 -8.4293 -1.9594 43 1 -3.6216 -8.6931 -4.2727 44 1 -1.9930 -9.4662 -6.0586 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291937053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:37 Heat of formation + Delta-G solvation = -63.542141 kcal Electronic energy + Delta-G solvation = -24995.135167 eV Core-core repulsion = 21424.612299 eV Total energy + Delta-G solvation = -3570.522868 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.12343 -38.60964 -37.42280 -36.62052 -33.48549 -32.38444 -31.59349 -30.64231 -29.99864 -26.92806 -25.79115 -24.45819 -23.09101 -22.21271 -21.58345 -20.46037 -19.65877 -18.55633 -17.97309 -17.02246 -16.55429 -16.07320 -15.68688 -15.49550 -15.09008 -14.75216 -14.43231 -14.29621 -13.91193 -13.61084 -13.33100 -13.08851 -12.86490 -12.80002 -12.43777 -12.32758 -12.18126 -12.10612 -11.89996 -11.49627 -11.28417 -11.06817 -10.96899 -10.91518 -10.87670 -10.72560 -10.60839 -10.39775 -9.93307 -9.63456 -9.16187 -9.00540 -8.86864 -8.67227 -8.36672 -8.29339 -5.95267 -3.99656 0.76232 1.37001 1.74447 2.54557 3.22802 3.29634 3.34712 3.39459 3.41454 4.11125 4.32341 4.46739 4.53263 4.54674 4.81898 4.87596 4.92146 5.04392 5.18650 5.32443 5.33885 5.36642 5.39512 5.42504 5.52675 5.68741 5.72630 5.78392 5.88264 5.90952 6.02329 6.04150 6.07130 6.21495 6.25076 6.26473 6.26916 6.65639 6.91982 7.22661 7.74850 7.87252 7.89782 8.08069 8.39515 8.77099 9.08559 9.63653 11.15646 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013280 B = 0.003002 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.922954 B = 9323.719652 C =10836.106899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.125 4.125 11 C 0.526 3.474 12 O -0.532 6.532 13 N -0.628 5.628 14 C 0.102 3.898 15 C -0.138 4.138 16 C -0.115 4.115 17 C 0.142 3.858 18 H 0.072 0.928 19 C -0.157 4.157 20 C 0.184 3.816 21 H 0.118 0.882 22 O -0.547 6.547 23 C -0.204 4.204 24 C -0.130 4.130 25 C -0.131 4.131 26 C -0.213 4.213 27 S 0.096 5.904 28 H 0.261 0.739 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.370 0.630 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.914 -23.891 -6.136 24.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.165 4.165 11 C 0.317 3.683 12 O -0.407 6.407 13 N -0.364 5.364 14 C -0.022 4.022 15 C -0.176 4.176 16 C -0.152 4.152 17 C 0.039 3.961 18 H 0.090 0.910 19 C -0.196 4.196 20 C 0.123 3.877 21 H 0.136 0.864 22 O -0.353 6.353 23 C -0.322 4.322 24 C -0.160 4.160 25 C -0.161 4.161 26 C -0.349 4.349 27 S 0.359 5.641 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.218 0.782 42 H 0.160 0.840 43 H 0.159 0.841 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.118 -24.277 -6.177 25.386 hybrid contribution -0.744 1.667 -0.160 1.832 sum 3.374 -22.610 -6.337 23.722 Atomic orbital electron populations 1.69991 1.06051 1.26669 1.50110 1.25023 0.94826 0.99196 0.95304 0.86653 0.79554 0.83185 0.78543 1.20248 1.21275 1.20249 1.21180 0.92870 0.91024 1.51503 0.92697 1.18894 0.93156 0.89350 0.98549 1.21859 1.00645 0.91717 1.02256 1.21308 0.88152 0.84471 0.74353 1.90654 1.14241 1.87011 1.48763 1.48832 1.07221 1.05300 1.75082 1.22246 0.81578 0.97540 1.00812 1.22844 0.99257 0.94774 1.00709 1.22691 0.94036 0.97153 1.01366 1.21384 0.95290 0.82939 0.96527 0.90996 1.22676 1.01073 0.97615 0.98239 1.20333 0.87729 0.86811 0.92852 0.86419 1.86651 1.46419 1.51442 1.50757 1.25446 0.98958 1.08887 0.98900 1.20152 0.93991 1.02925 0.98968 1.20220 1.01326 1.02276 0.92298 1.25587 0.95837 1.09812 1.03652 1.84007 1.11811 1.67437 1.00885 0.92908 0.95902 0.95851 0.90438 0.90395 0.90393 0.91716 0.90757 0.90123 0.89795 0.90816 0.91323 0.88944 0.78245 0.83955 0.84087 0.81851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.60 13.29 55.43 0.74 -26.87 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.53 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 10 C -0.12 -2.61 4.73 -27.88 -0.13 -2.75 16 11 C 0.53 10.47 7.58 -10.98 -0.08 10.38 16 12 O -0.53 -12.61 15.16 5.56 0.08 -12.52 16 13 N -0.63 -9.40 3.06 -163.02 -0.50 -9.90 16 14 C 0.10 1.14 6.65 -2.53 -0.02 1.12 16 15 C -0.14 -1.19 7.08 -24.58 -0.17 -1.37 16 16 C -0.11 -1.04 4.84 -24.89 -0.12 -1.16 16 17 C 0.14 1.79 2.88 -66.95 -0.19 1.60 16 18 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 19 C -0.16 -1.94 4.47 -26.73 -0.12 -2.06 16 20 C 0.18 1.91 3.38 -27.88 -0.09 1.82 16 21 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 22 O -0.55 -5.00 10.74 -35.23 -0.38 -5.38 16 23 C -0.20 -2.21 5.52 -36.00 -0.20 -2.41 16 24 C -0.13 -1.43 10.05 -41.21 -0.41 -1.85 16 25 C -0.13 -1.30 10.18 -41.21 -0.42 -1.72 16 26 C -0.21 -1.98 11.23 29.04 0.33 -1.66 16 27 S 0.10 0.90 22.54 -107.50 -2.42 -1.52 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.08 1.49 7.76 -51.93 -0.40 1.09 16 32 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.08 0.87 7.51 -51.93 -0.39 0.48 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.73 7.99 -51.93 -0.41 0.31 16 38 H 0.07 0.59 6.68 -51.93 -0.35 0.24 16 39 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 40 H 0.09 1.48 6.91 -51.93 -0.36 1.12 16 41 H 0.37 2.58 7.94 45.56 0.36 2.94 16 42 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 44 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 371.16 15.07 5.59 5.59 Total: -1.00 -34.49 371.16 -10.23 -44.73 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.16 Total: 2.05 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -2.17 Total: -12.94 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.24 Total: -36.76 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.29 Total: -17.90 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.42 Total: -1.52 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.49 -10.23 -44.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291937053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.816 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds